Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Forward (+)

30529432 .. 30531370

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATGTCCTTATATGTTATTACACTTCACACAATATACTGGGAGGTGGCACTGTGCAATTTTGGGTGTAGATTTCAGTTCATTTACAAAATTGCCACTGAGTCTCTCATTCCCTCCCTAAAGACCTCTTCTTTGCTTTCCCCAGTTAAAGACTGCGATTCGCCACTGAGCTCCGAGTTCAGGGCTCTGTCCCTCTACGGCGGTAGAAATGGAGTCTCCACCTCCTCGGCGATGGCCACGGAGGCTCAGCTCTCGACCCAAGACGTCAAATTGAAGGATGCCCAGATGGAGGTAGCTGATAAGCCTGAGAAAGTCGTGCTTCCAACCAACGAGTCCTCCGAAAGCCTCATCAGAATTCGACACACGTGTGCACACGTGATGGCCATGGCTGTTCAGAAGCTCTTCCCGGATGCAAAAGTGACAATTGGTCCGTGGATAGAAAATGGGTTCTATTATGATTTTGATACGGAGCCTTTGACGGACAAAGAGTTGAAGAGAATCAAGGAGATGGATCGAATCATTGGTAGAAACTTACCACGCATAAGAGAAGAAGTTTCAAGAGATGAAGCTCACAAAAGAATAACCGCTCTCAACGAACCATACAAATTGGAAATTTTGGATAGCATTAAAGAAGATCCCATTACCATATATCATATTGGTGATGAATGGTGGGACCTATGTGCGGGGCCCCATGTTGAAAAAACTGGAAATATTAACAGAAAAGCTGTCGAACTTGAGTCTATCGCTGGTGCCTACTGGAGAGGAGATGAAAAGAAACCGATGCTGCAGAGGATCTATGGCAACGCATGGGAGAGTGAAGATCAATTGAAGGCATATCTTCATTTCAAGGAGGAAGCTAAACGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

290

Amino Acids

33.14

Weight (kDa)

5.89

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_SAD	PF07973	214 - 266	5.7e-13	Threonyl and Alanyl tRNA synthetase second additional domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	749
AccBSI	CCGCTC	1 cut(s)	587
AciI	CCGC	3 cut(s)	201, 585, 683
AclWI	GGATC	3 cut(s)	519, 629, 800
AcoI	YGGCCR	2 cut(s)	234, 381
AcsI	RAATTY	2 cut(s)	354, 612
AcvI	CACGTG	2 cut(s)	366, 376
AcyI	GRCGYC	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	180, 289, 682
AflIII	ACRYGT	3 cut(s)	363, 365, 373
AgsI	TTSAA	6 cut(s)	274, 493, 558, 698, 829, 847
AhdI	GACNNNNNGTC	1 cut(s)	426
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	7 cut(s)	171, 250, 296, 400, 569, 725, 857
AluI	AGCT	7 cut(s)	171, 250, 296, 400, 569, 725, 857
Alw21I	GWGCWC	2 cut(s)	173, 373
Alw26I	GTCTC	2 cut(s)	108, 220
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	3 cut(s)	519, 629, 800
AoxI	GGCC	3 cut(s)	234, 381, 686
ApaI	GGGCCC	1 cut(s)	690
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	784
ApoI	RAATTY	2 cut(s)	354, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	428, 673, 686, 687
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	2 cut(s)	428, 673
BaeGI	GKGCMC	2 cut(s)	373, 690
BalI	TGGCCA	2 cut(s)	236, 383
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	3 cut(s)	173, 187, 690
BbrPI	CACGTG	2 cut(s)	366, 376
Bbv12I	GWGCWC	2 cut(s)	173, 373
BbvI	GCAGC	1 cut(s)	771
BccI	CCATC	4 cut(s)	226, 280, 373, 502
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	108, 220
BfmI	CTRYAG	1 cut(s)	785
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	785
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	786
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	2 cut(s)	428, 673
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmgT120I	GGNCC	4 cut(s)	428, 673, 686, 687
BmiI	GGNNCC	6 cut(s)	471, 674, 687, 688, 689, 751
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	2 cut(s)	49, 137
BmsI	GCATC	3 cut(s)	268, 400, 771
BmuI	ACTGGG	2 cut(s)	49, 137
BpmI	CTGGAG	1 cut(s)	778
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	407
BsaAI	YACGTR	2 cut(s)	366, 376
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	225, 237, 384, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 289, 682
Bse1I	ACTGG	4 cut(s)	44, 143, 709, 761
BseDI	CCNNGG	4 cut(s)	225, 237, 384, 431
BseGI	GGATG	2 cut(s)	283, 415
BseLI	CCNNNNNNNGG	3 cut(s)	180, 289, 682
BseMII	CTCAG	4 cut(s)	90, 158, 260, 297
BseNI	ACTGG	4 cut(s)	44, 143, 709, 761
BseRI	GAGGAG	2 cut(s)	214, 777
BseSI	GKGCMC	2 cut(s)	373, 690
BseXI	GCAGC	1 cut(s)	771
BshFI	GGCC	3 cut(s)	236, 383, 688
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	2 cut(s)	173, 373
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	175, 686
BslI	CCNNNNNNNGG	3 cut(s)	180, 289, 682
BsmAI	GTCTC	2 cut(s)	108, 220
BsmFI	GGGAC	2 cut(s)	175, 686
BsnI	GGCC	3 cut(s)	236, 383, 688
Bsp120I	GGGCCC	1 cut(s)	686
Bsp1286I	GDGCHC	4 cut(s)	173, 187, 373, 690
Bsp143I	GATC	4 cut(s)	511, 634, 792, 820
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	3 cut(s)	201, 585, 683
BspANI	GGCC	3 cut(s)	236, 383, 688
BspCNI	CTCAG	4 cut(s)	91, 159, 259, 298
BspLI	GGNNCC	6 cut(s)	471, 674, 687, 688, 689, 751
BspMAI	CTGCAG	1 cut(s)	789
BspPI	GGATC	3 cut(s)	519, 629, 800
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	749
BsrBI	CCGCTC	1 cut(s)	587
BsrI	ACTGG	4 cut(s)	44, 143, 709, 761
BssECI	CCNNGG	4 cut(s)	225, 237, 384, 431
BssMI	GATC	4 cut(s)	511, 634, 792, 820
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	3 cut(s)	133, 407, 488
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	2 cut(s)	366, 376
BstDEI	CTNAG	4 cut(s)	99, 167, 246, 306
BstDSI	CCRYGG	3 cut(s)	237, 384, 431
BstF5I	GGATG	2 cut(s)	283, 415
BstKTI	GATC	4 cut(s)	514, 637, 795, 823
BstMAI	GTCTC	2 cut(s)	108, 220
BstMBI	GATC	4 cut(s)	511, 634, 792, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	785
BstSLI	GKGCMC	2 cut(s)	373, 690
BstV1I	GCAGC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	634, 792
BstYI	RGATCY	2 cut(s)	634, 792
BsuRI	GGCC	3 cut(s)	236, 383, 688
BtgI	CCRYGG	3 cut(s)	237, 384, 431
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	283, 415
BtsIMutI	CAGTG	3 cut(s)	50, 96, 164
Cfr13I	GGNCC	4 cut(s)	428, 673, 686, 687
CviAII	CATG	3 cut(s)	385, 692, 807
DdeI	CTNAG	4 cut(s)	99, 167, 246, 306
DpnI	GATC	4 cut(s)	513, 636, 794, 822
DpnII	GATC	4 cut(s)	511, 634, 792, 820
DriI	GACNNNNNGTC	1 cut(s)	426
EaeI	YGGCCR	2 cut(s)	234, 381
Eam1104I	CTCTTC	3 cut(s)	133, 407, 488
Eam1105I	GACNNNNNGTC	1 cut(s)	426
EarI	CTCTTC	3 cut(s)	133, 407, 488
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	3 cut(s)	173, 187, 690
Eco47I	GGWCC	2 cut(s)	428, 673
Eco53kI	GAGCTC	1 cut(s)	171
Eco72I	CACGTG	2 cut(s)	366, 376
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	3 cut(s)	673, 686, 687
EcoRI	GAATTC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	3 cut(s)	173, 187, 690
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	388, 695, 810
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	2 cut(s)	175, 686
FatI	CATG	3 cut(s)	384, 691, 806
FauI	CCCGC	1 cut(s)	676
Fnu4HI	GCNGC	1 cut(s)	785
FokI	GGATG	2 cut(s)	290, 422
FriOI	GRGCYC	3 cut(s)	173, 187, 690
Fsp4HI	GCNGC	1 cut(s)	785
GluI	GCNGC	1 cut(s)	785
GsuI	CTGGAG	1 cut(s)	778
HaeIII	GGCC	3 cut(s)	236, 383, 688
HapII	CCGG	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	388, 695, 810
HinfI	GANTC	7 cut(s)	101, 158, 213, 332, 498, 516, 737
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	4 cut(s)	175, 340, 353, 396
Hpy188III	TCNNGA	2 cut(s)	253, 558
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	2 cut(s)	268, 823
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	4 cut(s)	264, 365, 375, 862
HpyCH4V	TGCA	4 cut(s)	57, 371, 413, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	4 cut(s)	99, 167, 246, 306
HpySE526I	ACGT	4 cut(s)	264, 365, 375, 862
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	388, 695, 810
Kzo9I	GATC	4 cut(s)	511, 634, 792, 820
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	176, 469
LpnPI	CCDG	9 cut(s)	25, 156, 166, 296, 318, 420, 690, 732, 742
Lsp1109I	GCAGC	1 cut(s)	771
LweI	GCATC	3 cut(s)	268, 400, 771
MaeII	ACGT	4 cut(s)	264, 365, 375, 862
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	4 cut(s)	513, 636, 794, 822
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	4 cut(s)	511, 634, 792, 820
MboII	GAAGA	7 cut(s)	120, 394, 505, 560, 644, 830, 830
MfeI	CAATTG	2 cut(s)	423, 824
MflI	RGATCY	2 cut(s)	634, 792
MhlI	GDGCHC	4 cut(s)	173, 187, 373, 690
MlsI	TGGCCA	2 cut(s)	236, 383
MluCI	AATT	8 cut(s)	58, 90, 269, 354, 423, 605, 612, 824
MluNI	TGGCCA	2 cut(s)	236, 383
MlyI	GAGTC	4 cut(s)	110, 222, 341, 746
MmeI	TCCRAC	1 cut(s)	347
Mox20I	TGGCCA	2 cut(s)	236, 383
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	2 cut(s)	236, 383
MseI	TTAA	3 cut(s)	147, 627, 714
MslI	CAYNNNNRTG	2 cut(s)	366, 657
Msp20I	TGGCCA	2 cut(s)	236, 383
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	2 cut(s)	423, 824
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	4 cut(s)	511, 634, 792, 820
NlaIII	CATG	3 cut(s)	388, 695, 810
NlaIV	GGNNCC	6 cut(s)	471, 674, 687, 688, 689, 751
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	418
OliI	CACNNNNGTG	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	158, 498, 516
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	786
PleI	GAGTC	4 cut(s)	109, 221, 340, 745
PmaCI	CACGTG	2 cut(s)	366, 376
PmlI	CACGTG	2 cut(s)	366, 376
PpsI	GAGTC	4 cut(s)	109, 221, 340, 745
Ppu21I	YACGTR	2 cut(s)	366, 376
PpuMI	RGGWCCY	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	673
PspCI	CACGTG	2 cut(s)	366, 376
PspN4I	GGNNCC	6 cut(s)	471, 674, 687, 688, 689, 751
PspOMI	GGGCCC	1 cut(s)	686
PspPI	GGNCC	4 cut(s)	428, 673, 686, 687
PspPPI	RGGWCCY	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	634, 792
RseI	CAYNNNNRTG	2 cut(s)	366, 657
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	147, 627, 714
SatI	GCNGC	1 cut(s)	785
Sau3AI	GATC	4 cut(s)	511, 634, 792, 820
Sau96I	GGNCC	4 cut(s)	428, 673, 686, 687
SchI	GAGTC	4 cut(s)	110, 222, 341, 746
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	4 cut(s)	173, 187, 373, 690
SfaNI	GCATC	3 cut(s)	268, 400, 771
SfcI	CTRYAG	1 cut(s)	785
SinI	GGWCC	2 cut(s)	428, 673
SmiMI	CAYNNNNRTG	2 cut(s)	366, 657
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	8 cut(s)	58, 90, 269, 354, 423, 605, 612, 824
SsiI	CCGC	3 cut(s)	201, 585, 683
SspI	AATATT	1 cut(s)	712
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	4 cut(s)	267, 368, 378, 865
TaqI	TCGA	5 cut(s)	254, 358, 514, 729, 865
TasI	AATT	8 cut(s)	58, 90, 269, 354, 423, 605, 612, 824
TfiI	GAWTC	3 cut(s)	158, 498, 516
Tru1I	TTAA	3 cut(s)	147, 627, 714
Tru9I	TTAA	3 cut(s)	147, 627, 714
TscAI	CASTG	3 cut(s)	57, 103, 171
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	784
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	5 cut(s)	70, 579, 678, 783, 830
TspGWI	ACGGA	4 cut(s)	254, 420, 482, 494
TspRI	CASTG	3 cut(s)	57, 103, 171
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	428, 673
XapI	RAATTY	2 cut(s)	354, 612
XmnI	GAANNNNTTC	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.