Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Reverse (-)

4520279 .. 4529562

Gene Structure 9284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGGCGGAATCGGTGGAGCTTCCCACTCGCCTCGGCATCCTTCCTTTCCGAAACAAGGTCCTCTTACCCGGCGCCATCATTCGAATTCGCTGCACTTCCCCCAGCAGTGTCAAATTGGTGGAGCAAGAGTTATGGCAGCGCGAAGAGAAGGGGTTAATTGGTATTCTTCCCGTTCGAGATGCTGCCGAGGCTGCAACAGTGGCCCCTGTGTTGTCTCAAGGTGTGGGAAGTGATTCTGGTGAACGAAGCTCTAGAGTTCAAGTTGGTACTTCCGATTCTCACAGGCCAGACGGAAAAAATCAGCAGGAAGTTATTCACTGGCATACAAGGGGAGTTGCTGCACGGGCTTTACATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACATATGTAGTTGTCCTTGAAGGCTTGTGTAGATTCAACGTCCAGGAACTTAGCACACGGGGAACATATTATACTGCACGAATATCTCCACTTGAAATGACAAAGTCTGAAATGGAGCAAGTGGAGCAAGATCCAGAGTTCATATCATTATCTCGCCAATTCAAAGCAACTGCTACGGAGCTGATTTCTGTTCTTGAGCAGAAACAAAAGACCGGAGGAAGAACAAAAGTTCTTCTGGAGACAGTTCCGGTTCACAAGTTGGCAGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAACTGTGTATGTTGGATTCAGTTGATCTGAAAGTAAGACTTTCCAAAGCTACTGAGCTAGTTGACAGGCATTTGCAGTCTATTCATGTAGCAGAGAAGATTACGCAAAAAGTTGAGGGTCAATTATCAAAATCGCAGAAAGAGTTTCTTTTGCGCCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGCGACAATGATGACGATGAAGACGATGTTGTTGCTCTGGAAAGAAAGATGCAAAGTTCAGGAATGCCTTCAAACATCTGGAAGCACGCACAGAGAGAGCTGAGGAGACTGAAAAAGATGCAACCCCAACAACCTGGATATAATAGTTCACGTGTTTACCTAGAGCTTCTCGCTGATCTTCCCTGGCAGAAGGCCAGTGAAGAATATGAATTGGATTTAAGGGCTGCAAAAGAACGTCTTGACAGTGATCACTATGGTTTAACTAAGGTCAAACAGCGGATTATTGAATATCTGGCTGTTCGCAAGCTCAAACCAGATGCCAGAGGCCCAGTGTTGTGTTTTGTTGGCCCGCCTGGTGTTGGAAAAACATCTTTGGCGTCATCTATTGCTGCTGCTTTGGGCAGAAAATTTATACGCATATCCCTTGGTGGTGTAAAGGATGAAGCTGATATCCGAGGACACAGGAGGACATACATTGGAAGCATGCCGGGTAGGCTCATTGATGGACTAAAGAAAGTAGCTGTTTCCAACCCGGTCATGCTGCTAGATGAAATTGACAAGACAGGTTCTGATGTGCGTGGTGATCCAGCTTCAGCTCTACTGGAGGTTCTTGATCCTGAGCAAAATAAAACATTCAATGATCACTATTTGAATGTTCCCTTCGACCTTTCAAAGGTGATTTTTGTGGCAACTGCAAATAGGGTGCAGCCGATTCCCCCACCACTCTTGGACAGGATGGAAGTTATTGAGCTGCCTGGATATACACCCGAAGAAAAGCTGAAGATAGCCATGCACCATTTAATTCCCCGAGTTCTTGATCAGCATGGGTTGAATTCTGAGTTTCTTAGAATCCCAGAGGCCATGGTGAAACTTATCATTCAAGGGTACACTAGGGAGGCTGGTGTTCGGAATCTGGAGAGAAACTTAGCTGCCTTGGCTCGTGCAGCTGCAGTAAAAGTTGCAGAGCAAGAACAAGCTGTCCCTCTGAGGAAAGATGTGCACTCGCTTGCTTCACCACTACTCGAAAACAGACTTGCTGATGGAGCTGAAGTGGAAATGGAGGTTATTCCGATGGGTGTGAATAAGCATGAGATATCAAGCGCTTTCAAGATTGATTCGCCATTGGTTGTGGATGAGGATATGCTGGAGAAAGTATTAGGGCCTCCAAGGTTTGATGACAAAGAAGCTGCAGAACGAGTTGCAACACCAGGTGTTTCTGTTGGGCTTGTTTGGACTGCTTTTGGTGGAGAGGTTCAATTTGTGGAGGCCACAGCAATGGGGGGAAAGGGTGAACTGCATCTCACTGGTCAACTTGGAGATGTTATCAAAGAATCAGCACAAATAGCATTGACATGGGTGAGAGGCAGGGCAAAAGATCTTAAGTTCGCAACAGCTGAGGCAGCCAATCTTTTGGAGGGTCGGGATGTTCATATACACTTTCCTGCTGGGGCTGTACCGAAGGATGGACCCTCAGCAGGTGTGACTCTGGTAACAGCACTGGTTTCATTGTTCTGTCAGAGAAGAGTAAGAGCAGATACAGCAATGACTGGAGAAATGACATTGAGGGGTCTCGTACTACCTGTTGGTGGTGTCAAGGACAAGGTATTGGCAGCCCACCGTTGTGGTATTACAAGAGTCATTCTTCCAGAGAGGAATCTGAAGGATTTAACTGATGTACCGTCGGCTGTTCTTTCTGGTCTTGAGATAATACTAGCAAAGCGAATGGAAGATGTATTAGAGCAGGCTTTTGAAGGCGGATGTCCCTGGAGACAGCACTCAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

889

Amino Acids

98.05

Weight (kDa)

6.76

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	11 - 254	4.3e-28	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	405 - 542	7.4e-26	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	405 - 539	7.3e-09	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	567 - 618	7e-18	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	670 - 876	1.1e-76	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2345
Acc36I	ACCTGC	1 cut(s)	2345
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	141
AciI	CCGC	4 cut(s)	5, 1156, 1229, 2634
AclWI	GGATC	3 cut(s)	515, 1457, 1487
AcsI	RAATTY	3 cut(s)	84, 1286, 1711
AcuI	CTGAAG	4 cut(s)	1455, 1679, 1947, 2558
AcvI	CACGTG	1 cut(s)	1031
AcyI	GRCGYC	2 cut(s)	72, 1256
AdeI	CACNNNGTG	1 cut(s)	2090
AfaI	GTAC	5 cut(s)	268, 1766, 2334, 2454, 2556
AfeI	AGCGCT	1 cut(s)	1981
AfiI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
AflII	CTTAAG	1 cut(s)	2258
AflIII	ACRYGT	1 cut(s)	1030
AjnI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
AleI	CACNNNNGTG	1 cut(s)	2499
AloI	GAACNNNNNNTCC	2 cut(s)	1842, 1874
Alw21I	GWGCWC	1 cut(s)	1881
Alw26I	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
Alw44I	GTGCAC	1 cut(s)	1877
AlwI	GGATC	3 cut(s)	515, 1457, 1487
AlwNI	CAGNNNCTG	1 cut(s)	1448
Ama87I	CYCGRG	1 cut(s)	1686
Aor51HI	AGCGCT	1 cut(s)	1981
AoxI	GGCC	8 cut(s)	201, 284, 1071, 1204, 1225, 1737, 2039, 2145
ApaLI	GTGCAC	1 cut(s)	1877
ApoI	RAATTY	3 cut(s)	84, 1286, 1711
Asp700I	GAANNNNTTC	3 cut(s)	232, 312, 946
AspLEI	GCGC	4 cut(s)	74, 141, 849, 1982
AspS9I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
AsuC2I	CCSGG	3 cut(s)	69, 1368, 1412
AsuHPI	GGTGA	7 cut(s)	251, 1472, 1567, 1756, 1884, 2180, 2248
AsuII	TTCGAA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	1686
AvaII	GGWCC	2 cut(s)	58, 2345
BaeGI	GKGCMC	1 cut(s)	1881
BaeI	ACNNNNGTAYC	2 cut(s)	2538, 2571
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	1818
BbrPI	CACGTG	1 cut(s)	1031
BbsI	GAAGAC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	1881
BbvCI	CCTCAGC	3 cut(s)	980, 2274, 2350
BccI	CCATC	6 cut(s)	83, 1376, 1609, 1913, 1945, 2336
BcgI	CGANNNNNNTGC	4 cut(s)	72, 106, 893, 927
BciT130I	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BclI	TGATCA	3 cut(s)	1126, 1519, 1696
BcnI	CCSGG	3 cut(s)	69, 1368, 1412
BcoDI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BfaI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
BfmI	CTRYAG	2 cut(s)	1827, 2067
BfoI	RGCGCY	2 cut(s)	75, 1983
BfrI	CTTAAG	1 cut(s)	2258
BfuAI	ACCTGC	1 cut(s)	2345
BglI	GCCNNNNNGGC	1 cut(s)	1372
BglII	AGATCT	1 cut(s)	2254
Bme18I	GGWCC	2 cut(s)	58, 2345
BmeT110I	CYCGRG	1 cut(s)	1686
BmgT120I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
BmiI	GGNNCC	3 cut(s)	73, 204, 2347
BmrI	ACTGGG	1 cut(s)	1202
BmsI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	1202
BpiI	GAAGAC	1 cut(s)	906
BpmI	CTGGAG	6 cut(s)	647, 1502, 1814, 2045, 2448, 2665
Bpu10I	CCTNAGC	4 cut(s)	980, 1497, 2274, 2350
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	4 cut(s)	201, 343, 605, 2600
BpuMI	CCSGG	3 cut(s)	69, 1368, 1412
BsaAI	YACGTR	1 cut(s)	1031
BsaHI	GRCGYC	2 cut(s)	72, 1256
BsaI	GGTCTC	1 cut(s)	2453
BsaJI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BsaWI	WCCGGW	2 cut(s)	602, 637
BsaXI	ACNNNNNCTCC	6 cut(s)	113, 143, 683, 713, 1914, 1944
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
Bse1I	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
Bse3DI	GCAATG	2 cut(s)	2160, 2427
BseBI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BseDI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BseGI	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BseLI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
BseMI	GCAATG	2 cut(s)	2160, 2427
BseMII	CTCAG	7 cut(s)	738, 971, 1488, 1707, 1856, 2265, 2364
BseNI	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
BseRI	GAGGAG	4 cut(s)	378, 704, 887, 997
BseSI	GKGCMC	1 cut(s)	1881
BseYI	CCCAGC	2 cut(s)	101, 2324
BsgI	GTGCAG	5 cut(s)	76, 324, 450, 1604, 1842
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	1881
BsiHKCI	CYCGRG	1 cut(s)	1686
BsiSI	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
BslFI	GGGAC	2 cut(s)	1844, 2625
BslI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
BsmAI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BsmFI	GGGAC	2 cut(s)	1844, 2625
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
Bso31I	GGTCTC	1 cut(s)	2453
BsoBI	CYCGRG	1 cut(s)	1686
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	1881
Bsp143I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
Bsp19I	CCATGG	1 cut(s)	1740
BspACI	CCGC	4 cut(s)	5, 1156, 1229, 2634
BspANI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BspCNI	CTCAG	7 cut(s)	739, 972, 1489, 1708, 1857, 2266, 2363
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	73, 204, 2347
BspMAI	CTGCAG	2 cut(s)	1831, 2071
BspMI	ACCTGC	1 cut(s)	2345
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	515, 1457, 1487
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	2258
BspTNI	GGTCTC	1 cut(s)	2453
BsrDI	GCAATG	2 cut(s)	2160, 2427
BsrI	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
BssECI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BssMI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
BssNI	GRCGYC	2 cut(s)	72, 1256
BssSI	CACGAG	1 cut(s)	1818
BssT1I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
Bst2BI	CACGAG	1 cut(s)	1818
Bst2UI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
Bst4CI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
Bst6I	CTCTTC	2 cut(s)	138, 2395
BstACI	GRCGYC	2 cut(s)	72, 1256
BstAFI	CTTAAG	1 cut(s)	2258
BstBAI	YACGTR	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1887, 2622
BstDSI	CCRYGG	1 cut(s)	1740
BstENI	CCTNNNNNAGG	1 cut(s)	1550
BstF5I	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	75, 1983
BstHHI	GCGC	4 cut(s)	74, 141, 849, 1982
BstKTI	GATC	9 cut(s)	523, 721, 1057, 1129, 1465, 1495, 1522, 1699, 2257
BstMAI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BstMBI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
BstNI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BstNSI	RCATGY	1 cut(s)	1366
BstSFI	CTRYAG	2 cut(s)	1827, 2067
BstSLI	GKGCMC	1 cut(s)	1881
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	2 cut(s)	520, 2254
BstXI	CCANNNNNNTGG	4 cut(s)	1013, 2155, 2290, 2501
BstYI	RGATCY	2 cut(s)	520, 2254
BsuRI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BtgI	CCRYGG	1 cut(s)	1740
BtsCI	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	8 cut(s)	112, 204, 316, 1081, 1129, 1215, 2181, 2375
BveI	ACCTGC	1 cut(s)	2345
Cac8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1887, 2622
CaiI	CAGNNNCTG	1 cut(s)	1448
CfoI	GCGC	4 cut(s)	74, 141, 849, 1982
Cfr13I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
CseI	GACGC	1 cut(s)	1245
CsiI	ACCWGGT	1 cut(s)	2086
Csp6I	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
CspCI	CAANNNNNGTGG	2 cut(s)	1587, 1622
CviAII	CATG	8 cut(s)	779, 1363, 1417, 1669, 1703, 1741, 1967, 2232
CviQI	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1698, 2256
DpnII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
DraIII	CACNNNGTG	1 cut(s)	2090
Eam1104I	CTCTTC	2 cut(s)	138, 2395
EarI	CTCTTC	2 cut(s)	138, 2395
EciI	GGCGGA	2 cut(s)	20, 2649
Eco130I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
Eco31I	GGTCTC	1 cut(s)	2453
Eco32I	GATATC	2 cut(s)	1330, 1974
Eco47I	GGWCC	2 cut(s)	58, 2345
Eco47III	AGCGCT	1 cut(s)	1981
Eco57I	CTGAAG	4 cut(s)	1455, 1679, 1947, 2558
Eco72I	CACGTG	1 cut(s)	1031
Eco88I	CYCGRG	1 cut(s)	1686
EcoNI	CCTNNNNNAGG	1 cut(s)	1550
EcoO109I	RGGNCCY	2 cut(s)	58, 2039
EcoRI	GAATTC	2 cut(s)	84, 1711
EcoRII	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
EcoRV	GATATC	2 cut(s)	1330, 1974
EcoT14I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
FaeI	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
FaqI	GGGAC	2 cut(s)	1844, 2625
FatI	CATG	8 cut(s)	778, 1362, 1416, 1668, 1702, 1740, 1966, 2231
FauI	CCCGC	1 cut(s)	1236
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	3 cut(s)	1126, 1519, 1696
FokI	GGATG	7 cut(s)	23, 1331, 1627, 2024, 2315, 2354, 2649
FspBI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
GlaI	GCGC	4 cut(s)	73, 140, 848, 1981
GsaI	CCCAGC	2 cut(s)	105, 2328
GsuI	CTGGAG	6 cut(s)	647, 1502, 1814, 2045, 2448, 2665
HaeII	RGCGCY	2 cut(s)	75, 1983
HaeIII	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
HapII	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
HgaI	GACGC	1 cut(s)	1245
HhaI	GCGC	4 cut(s)	74, 141, 849, 1982
Hin1I	GRCGYC	2 cut(s)	72, 1256
Hin1II	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
Hin6I	GCGC	4 cut(s)	72, 139, 847, 1980
HinP1I	GCGC	4 cut(s)	72, 139, 847, 1980
HincII	GTYRAC	2 cut(s)	757, 2189
HindII	GTYRAC	2 cut(s)	757, 2189
HpaII	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
HphI	GGTGA	7 cut(s)	251, 1472, 1567, 1756, 1884, 2180, 2248
Hpy166II	GTNNAC	9 cut(s)	242, 643, 757, 1028, 1036, 1767, 1879, 2171, 2189
Hpy8I	GTNNAC	9 cut(s)	242, 643, 757, 1028, 1036, 1767, 1879, 2171, 2189
Hpy99I	CGWCG	1 cut(s)	2563
HpyAV	CCTTC	9 cut(s)	50, 142, 404, 957, 1063, 1549, 2332, 2533, 2624
HpyCH4III	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
HpyCH4IV	ACGT	3 cut(s)	429, 1030, 1114
HpySE526I	ACGT	3 cut(s)	429, 1030, 1114
Hsp92I	GRCGYC	2 cut(s)	72, 1256
Hsp92II	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
HspAI	GCGC	4 cut(s)	72, 139, 847, 1980
KasI	GGCGCC	1 cut(s)	71
Ksp22I	TGATCA	3 cut(s)	1126, 1519, 1696
Kzo9I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
LmnI	GCTCC	8 cut(s)	16, 121, 505, 514, 568, 691, 874, 1922
LweI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
MabI	ACCWGGT	1 cut(s)	2086
MaeI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
MaeII	ACGT	3 cut(s)	429, 1030, 1114
MaeIII	GTNAC	3 cut(s)	388, 2359, 2368
MalI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1698, 2256
MboI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
MflI	RGATCY	2 cut(s)	520, 2254
MhlI	GDGCHC	1 cut(s)	1881
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	2356, 2523
MmeI	TCCRAC	3 cut(s)	687, 1219, 1431
MroXI	GAANNNNTTC	3 cut(s)	232, 312, 946
MseI	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
MslI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
MspA1I	CMGCKG	3 cut(s)	1156, 1826, 2273
MspCI	CTTAAG	1 cut(s)	2258
MspI	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
MvnI	CGCG	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	3 cut(s)	69, 1368, 1412
NcoI	CCATGG	1 cut(s)	1740
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
NlaIV	GGNNCC	3 cut(s)	73, 204, 2347
NmeAIII	GCCGAG	2 cut(s)	12, 211
NmuCI	GTSAC	1 cut(s)	2359
NspI	RCATGY	1 cut(s)	1366
NspV	TTCGAA	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	2499
PaeI	GCATGC	1 cut(s)	1366
PaqCI	CACCTGC	1 cut(s)	2345
PcsI	WCGNNNNNNNCGW	1 cut(s)	900
PctI	GAATGC	1 cut(s)	948
PdmI	GAANNNNTTC	3 cut(s)	232, 312, 946
PflFI	GACNNNGTC	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	432
PleI	GAGTC	2 cut(s)	2356, 2522
PluTI	GGCGCC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	1031
PmlI	CACGTG	1 cut(s)	1031
PpsI	GAGTC	2 cut(s)	2356, 2522
Ppu21I	YACGTR	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
PspCI	CACGTG	1 cut(s)	1031
PspFI	CCCAGC	2 cut(s)	101, 2324
PspGI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
PspN4I	GGNNCC	3 cut(s)	73, 204, 2347
PspPI	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
PspPPI	RGGWCCY	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PstI	CTGCAG	2 cut(s)	1831, 2071
PstNI	CAGNNNCTG	1 cut(s)	1448
PsuI	RGATCY	2 cut(s)	520, 2254
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	1826, 2273
RsaI	GTAC	5 cut(s)	268, 1766, 2334, 2454, 2556
RsaNI	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
RseI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
SaqAI	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
Sau3AI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
Sau96I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
SchI	GAGTC	2 cut(s)	2356, 2523
SduI	GDGCHC	1 cut(s)	1881
SexAI	ACCWGGT	1 cut(s)	2086
SfaNI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
SfcI	CTRYAG	2 cut(s)	1827, 2067
SfoI	GGCGCC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	2 cut(s)	58, 2345
SmiMI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
SmlI	CTYRAG	5 cut(s)	216, 358, 584, 2258, 2579
SmoI	CTYRAG	5 cut(s)	216, 358, 584, 2258, 2579
SphI	GCATGC	1 cut(s)	1366
SsiI	CCGC	4 cut(s)	5, 1156, 1229, 2634
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
StyI	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
TaaI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
TaiI	ACGT	3 cut(s)	432, 1033, 1117
TaqI	TCGA	4 cut(s)	82, 175, 1542, 1902
Tru1I	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
Tru9I	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
TscAI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2188, 2382
TseFI	GTSAC	1 cut(s)	2359
Tsp45I	GTSAC	1 cut(s)	2359
TspDTI	ATGAA	8 cut(s)	520, 767, 912, 1101, 1335, 1443, 2297, 2373
TspGWI	ACGGA	2 cut(s)	306, 581
TspRI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2188, 2382
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	2258
VneI	GTGCAC	1 cut(s)	1877
VpaK11BI	GGWCC	2 cut(s)	58, 2345
XagI	CCTNNNNNAGG	1 cut(s)	1550
XapI	RAATTY	3 cut(s)	84, 1286, 1711
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	1366
XmnI	GAANNNNTTC	3 cut(s)	232, 312, 946
XspI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.