Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007685

Physical Location & Seq

Genomic Coordinates Reverse (-)

5157272 .. 5159409

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATAAGCTGATTGAATTCGGAAAGAAAGCTCTGTTCTATGCGAGGGTTCTTTCCGGCTACGAAGAACGGAGAATCCGATCGTTTCGGTTGGAGGTTGAAAAGCCCCTGAAAGAGGCAACTGCGCGGAAGTTAGCCTTAAGAAAGATTCCTGAACAAACTATATTATCGGAGGTTCGCCGTATGGTCGAGGAGATGCAAACTTTAAATAGGAAGCTGGAAGAAACTGAGGCTCAAATTGAAGAGTACTTCAAGCCGATTGACAAAGAGGCTGAGATGATTATGAAAACGCAACTTGAAGGAGAGGAGAGGACAATGAAGGAGATGATGAAAGCCATGCATCAGCAGGCTTTGCTTGAGAAAACAGAAGCGGAGAAAGAAGCACAAAAGAAATTGGAAACAGACCAGAAGAACCAAGAGTCAAGACCCAAGACCCAGCATCTACAGCGGCCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

18.16

Weight (kDa)

9.0

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17010
fragaria_vesca	FvH4_5g20230 FvH4_5g20230
malus_domestica	MD04G1051900.v1.1 MD06G1048200.v1.1
prunus_persica	Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1
pyrus_communis	pycom04g04560 pycom06g04120
rosa_chinensis	RchiOBHm_Chr7g0205301
rosa_multiflora	Rmu_sc0001072.1_g000020
rosa_roxburghii	Rroxscaffold_3G00252490
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220100 Rh7BG216100 Rh7CG232800 Rh7CG233000 Rh7DG227100
rosa_wichuraiana	Rw7G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AciI	CCGC	3 cut(s)	127, 371, 448
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	17, 101, 242, 253, 299
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	10, 32, 217
AluI	AGCT	3 cut(s)	10, 32, 217
AoxI	GGCC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	450
BceAI	ACGGC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	139
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
BmcAI	AGTACT	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	452
BmsI	GCATC	3 cut(s)	186, 349, 448
BpuEI	CTTGAG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	219, 264
BseRI	GAGGAG	2 cut(s)	206, 320
BseYI	CCCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	451
BsiEI	CGRYCG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	127, 371, 448
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	2 cut(s)	220, 265
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	139
BssMI	GATC	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	228, 273
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 445
BstSFI	CTRYAG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	337
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	228, 273
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	342
FaeI	CATG	1 cut(s)	340
FaiI	YATR	5 cut(s)	42, 164, 185, 284, 338
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	449
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	75, 148, 419
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	23, 80, 172
Hpy188III	TCNNGA	2 cut(s)	152, 423
HpyAV	CCTTC	2 cut(s)	293, 313
HpyCH4V	TGCA	2 cut(s)	199, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 445
HpyF3I	CTNAG	2 cut(s)	228, 273
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	70, 122, 165, 203, 332, 419, 449
LweI	GCATC	3 cut(s)	186, 349, 448
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	4 cut(s)	77, 233, 254, 421
MluCI	AATT	3 cut(s)	17, 237, 392
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	39, 88, 109, 166, 184, 223, 262, 298, 303
Mph1103I	ATGCAT	1 cut(s)	342
MseI	TTAA	2 cut(s)	140, 206
MspA1I	CMGCKG	1 cut(s)	448
MspCI	CTTAAG	1 cut(s)	139
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	352, 445
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	75, 148
PkrI	GCNGC	1 cut(s)	450
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	450
PvuI	CGATCG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	140, 206
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	450
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	428
SetI	ASST	5 cut(s)	12, 34, 99, 177, 219
SfaNI	GCATC	3 cut(s)	186, 349, 448
SfcI	CTRYAG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	139, 356
SmoI	CTYRAG	2 cut(s)	139, 356
Sse9I	AATT	3 cut(s)	17, 237, 392
SsiI	CCGC	3 cut(s)	127, 371, 448
TaqI	TCGA	1 cut(s)	189
TasI	AATT	3 cut(s)	17, 237, 392
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	75, 148
Tru1I	TTAA	2 cut(s)	140, 206
Tru9I	TTAA	2 cut(s)	140, 206
TspDTI	ATGAA	4 cut(s)	17, 299, 332, 344
TspGWI	ACGGA	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.