Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Reverse (-)

5161431 .. 5163619

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAACGCTGGCCCTATAAATTCCACATCCCCGTCCCGCAACCGCTTTCAATTTCCCACTTTTTCTCTGCAAATTTTCTTGCTTGCTCGTTCTTCCTTTCTTGCCTACCAAGCAACTATGGACGCCTTCACGTCTTTCTTCGATTCTCAAACGCCTTCGCGAAACCGCTGGGCCTCCGAGTCTCTCAAGAATTTCCGTCAGATCTCTCCCGTCGTTCAGAATCATCTCAAACTGGTCTACCTCACTTTGTGCTGCACCCTGATTGCATCAGCTGCAGGAGCCTACCTGCATATCCTGTGGAATATCGGAGGCATGATCACCTTTCTTTCTTGCACTGGATGCATGGTGTGGTTACTCTGCACACCAACCTATCAAGAGAAGAAGAGGGTTTCTCTACTGATGGCCGCTGGTCTCTTTATGGGGGCTACTCTTGGGCCTTTAATTGAACTGGCCATTGAGATTAACCCAAGTGTCTTGATGAGTGCATTTGGAGGAACTGCTCTGGCCTTTGGCTGTTTCTCAGCAGCAGCCATGTTGGCAAGGCGCCGGGAATACCTTTACCTGGGGGGTTTGCTTTCTTCTGGCCTTTCTATACTAATCTGGTTACAGTTTGCTTCTTCTGTCTTTGGGGGTTCTGCAGCTCTTTTCAAGTTTGAGCTGTATTTCGGGCTTTTGATTTTCGTGGGCTACATGGTAGTTGACACCCAGGAAATGATTGAGAAGGCGCACCATGGTGACCTGGACTATGTGAAGCATGCCCTGACGCTTTTCACTGACTTTGTTGCTGTGTTCGTCCGTATACTGGCTATCATGTTGAAGAACTCGGCCGAGAAGAATGAGAAGAAGAAGAAAAGAAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

288

Amino Acids

31.87

Weight (kDa)

9.32

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	73 - 271	2.5e-40	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	543
AccI	GTMKAC	2 cut(s)	237, 799
AccII	CGCG	1 cut(s)	160
AciI	CCGC	4 cut(s)	37, 43, 166, 405
AcoI	YGGCCR	3 cut(s)	402, 450, 825
AcsI	RAATTY	3 cut(s)	19, 72, 190
AcyI	GRCGYC	2 cut(s)	123, 544
AdeI	CACNNNGTG	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	562, 802
AgsI	TTSAA	4 cut(s)	50, 446, 649, 817
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	3 cut(s)	561, 705, 738
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	3 cut(s)	272, 641, 658
AluI	AGCT	3 cut(s)	272, 641, 658
Alw26I	GTCTC	2 cut(s)	186, 416
AoxI	GGCC	8 cut(s)	10, 171, 402, 434, 450, 504, 583, 825
ApeKI	GCWGC	5 cut(s)	252, 272, 524, 527, 638
ApoI	RAATTY	3 cut(s)	19, 72, 190
AspLEI	GCGC	2 cut(s)	546, 727
AspS9I	GGNCC	3 cut(s)	11, 171, 434
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	2 cut(s)	310, 746
BalI	TGGCCA	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	543
BbvI	GCAGC	5 cut(s)	239, 259, 536, 539, 650
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	3 cut(s)	563, 707, 740
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	186, 416
BfmI	CTRYAG	2 cut(s)	273, 636
BfoI	RGCGCY	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	6 cut(s)	253, 273, 405, 525, 528, 639
BlsI	GCNGC	6 cut(s)	254, 274, 406, 526, 529, 640
Bme1390I	CCNGG	4 cut(s)	548, 563, 707, 740
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	11, 171, 434
BmiI	GGNNCC	2 cut(s)	280, 545
BmrFI	CCNGG	4 cut(s)	548, 563, 707, 740
BmsI	GCATC	2 cut(s)	275, 329
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	548
BsaHI	GRCGYC	2 cut(s)	123, 544
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	562, 705, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 802
Bse1I	ACTGG	4 cut(s)	237, 340, 453, 807
BseBI	CCWGG	3 cut(s)	563, 707, 740
BseDI	CCNNGG	3 cut(s)	562, 705, 730
BseGI	GGATG	2 cut(s)	26, 344
BseLI	CCNNNNNNNGG	2 cut(s)	562, 802
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	4 cut(s)	237, 340, 453, 807
BseX3I	CGGCCG	1 cut(s)	825
BseXI	GCAGC	5 cut(s)	239, 259, 536, 539, 650
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	2 cut(s)	238, 343
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	8 cut(s)	12, 173, 404, 436, 452, 506, 585, 827
BshNI	GGYRCC	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	828
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	562, 802
BsmAI	GTCTC	2 cut(s)	186, 416
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	8 cut(s)	12, 173, 404, 436, 452, 506, 585, 827
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	201, 315
Bsp19I	CCATGG	1 cut(s)	730
Bsp68I	TCGCGA	1 cut(s)	160
BspACI	CCGC	4 cut(s)	37, 43, 166, 405
BspANI	GGCC	8 cut(s)	12, 173, 404, 436, 452, 506, 585, 827
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	280, 545
BspMAI	CTGCAG	2 cut(s)	277, 640
BspMI	ACCTGC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	237, 340, 453, 807
BssECI	CCNNGG	3 cut(s)	562, 705, 730
BssMI	GATC	2 cut(s)	201, 315
BssNAI	GTATAC	1 cut(s)	800
BssNI	GRCGYC	2 cut(s)	123, 544
BssT1I	CCWWGG	1 cut(s)	730
Bst1107I	GTATAC	1 cut(s)	800
Bst2UI	CCWGG	3 cut(s)	563, 707, 740
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	2 cut(s)	123, 544
BstAPI	GCANNNNNTGC	2 cut(s)	272, 339
BstC8I	GCNNGC	3 cut(s)	10, 84, 756
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	1 cut(s)	730
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	26, 344
BstFNI	CGCG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	2 cut(s)	546, 727
BstKTI	GATC	2 cut(s)	204, 318
BstMAI	GTCTC	2 cut(s)	186, 416
BstMBI	GATC	2 cut(s)	201, 315
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 272, 278, 339, 536
BstNI	CCWGG	3 cut(s)	563, 707, 740
BstNSI	RCATGY	1 cut(s)	758
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	4 cut(s)	546, 561, 705, 738
BstSFI	CTRYAG	2 cut(s)	273, 636
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	239, 259, 536, 539, 650
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZ17I	GTATAC	1 cut(s)	800
BstZI	CGGCCG	1 cut(s)	825
BsuRI	GGCC	8 cut(s)	12, 173, 404, 436, 452, 506, 585, 827
BtgI	CCRYGG	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	26, 344
BtsIMutI	CAGTG	2 cut(s)	333, 771
BtuMI	TCGCGA	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	10, 84, 756
CfoI	GCGC	2 cut(s)	546, 727
Cfr13I	GGNCC	3 cut(s)	11, 171, 434
CseI	GACGC	2 cut(s)	131, 772
CviAII	CATG	7 cut(s)	313, 343, 532, 691, 731, 755, 811
DdeI	CTNAG	1 cut(s)	520
DinI	GGCGCC	1 cut(s)	545
DpnI	GATC	2 cut(s)	203, 317
DpnII	GATC	2 cut(s)	201, 315
DraIII	CACNNNGTG	1 cut(s)	249
EaeI	YGGCCR	3 cut(s)	402, 450, 825
EagI	CGGCCG	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	416
Eco52I	CGGCCG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	734
EcoO65I	GGTNACC	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	561, 705, 738
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	545
EheI	GGCGCC	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	7 cut(s)	316, 346, 535, 694, 734, 758, 814
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	312, 342, 531, 690, 730, 754, 810
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	315
FblI	GTMKAC	2 cut(s)	237, 799
Fnu4HI	GCNGC	6 cut(s)	253, 273, 405, 525, 528, 639
FokI	GGATG	2 cut(s)	13, 351
Fsp4HI	GCNGC	6 cut(s)	253, 273, 405, 525, 528, 639
GlaI	GCGC	2 cut(s)	545, 726
GluI	GCNGC	6 cut(s)	253, 273, 405, 525, 528, 639
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	8 cut(s)	12, 173, 404, 436, 452, 506, 585, 827
HapII	CCGG	1 cut(s)	547
HgaI	GACGC	2 cut(s)	131, 772
HhaI	GCGC	2 cut(s)	546, 727
Hin1I	GRCGYC	2 cut(s)	123, 544
Hin1II	CATG	7 cut(s)	316, 346, 535, 694, 734, 758, 814
Hin6I	GCGC	2 cut(s)	544, 725
HinP1I	GCGC	2 cut(s)	544, 725
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	143, 179, 220
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	2 cut(s)	310, 746
Hpy166II	GTNNAC	3 cut(s)	238, 700, 800
Hpy188I	TCNGA	4 cut(s)	178, 201, 219, 308
Hpy188III	TCNNGA	4 cut(s)	159, 187, 374, 475
Hpy8I	GTNNAC	3 cut(s)	238, 700, 800
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	136, 165, 715
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4IV	ACGT	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 272, 278, 339, 536
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	2 cut(s)	123, 544
Hsp92II	CATG	7 cut(s)	316, 346, 535, 694, 734, 758, 814
HspAI	GCGC	2 cut(s)	544, 725
KasI	GGCGCC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	201, 315
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	5 cut(s)	239, 259, 536, 539, 650
LweI	GCATC	2 cut(s)	275, 329
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	351, 603, 734
MalI	GATC	2 cut(s)	203, 317
MboI	GATC	2 cut(s)	201, 315
MflI	RGATCY	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	5 cut(s)	19, 50, 72, 190, 441
MluNI	TGGCCA	1 cut(s)	452
Mly113I	GGCGCC	1 cut(s)	544
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	5 cut(s)	184, 251, 302, 378, 485
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	2 cut(s)	440, 462
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	3 cut(s)	168, 272, 407
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	4 cut(s)	548, 563, 707, 740
MvaI	CCWGG	3 cut(s)	563, 707, 740
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	110, 272, 278, 339, 536
NarI	GGCGCC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	201, 315
NlaIII	CATG	7 cut(s)	316, 346, 535, 694, 734, 758, 814
NlaIV	GGNNCC	2 cut(s)	280, 545
NmeAIII	GCCGAG	2 cut(s)	803, 853
NmuCI	GTSAC	1 cut(s)	734
NruI	TCGCGA	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	1 cut(s)	758
OliI	CACNNNNGTG	1 cut(s)	732
PaeI	GCATGC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	143, 220
PkrI	GCNGC	6 cut(s)	254, 274, 406, 526, 529, 640
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	561, 705, 738
PspEI	GGTNACC	1 cut(s)	734
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	3 cut(s)	561, 705, 738
PspN4I	GGNNCC	2 cut(s)	280, 545
PspPI	GGNCC	3 cut(s)	11, 171, 434
PstI	CTGCAG	2 cut(s)	277, 640
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	272
RruI	TCGCGA	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	440, 462
SatI	GCNGC	6 cut(s)	253, 273, 405, 525, 528, 639
Sau3AI	GATC	2 cut(s)	201, 315
Sau96I	GGNCC	3 cut(s)	11, 171, 434
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	4 cut(s)	548, 563, 707, 740
SfaNI	GCATC	2 cut(s)	275, 329
SfcI	CTRYAG	2 cut(s)	273, 636
SfoI	GGCGCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	5 cut(s)	19, 50, 72, 190, 441
SsiI	CCGC	4 cut(s)	37, 43, 166, 405
SspDI	GGCGCC	1 cut(s)	543
StyD4I	CCNGG	4 cut(s)	546, 561, 705, 738
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	609
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	19, 50, 72, 190, 441
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	143, 220
Tru1I	TTAA	2 cut(s)	440, 462
Tru9I	TTAA	2 cut(s)	440, 462
TscAI	CASTG	2 cut(s)	340, 778
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	5 cut(s)	252, 272, 524, 527, 638
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	185, 785
TspRI	CASTG	2 cut(s)	340, 778
XapI	RAATTY	3 cut(s)	19, 72, 190
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	2 cut(s)	237, 799
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.