Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

8914959 .. 8917418

Gene Structure 2460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCACTCACTTTTATCTCCCCGCTATCCATTAAATCCTTAACAAGTTGTTCTTCCAGTTCCAAGGCTCCTCCAGTTCGGCTATCATCCCTCTCCAACAAGCACTTTTCTGTAGTCTGTCAGATAGACCCTGCAAAGAGACACCATTTTCATGGTTGTTCCAACAAGCAAAACAAGACCAATAATGCAGAGTCAAAGAACTGGAAAAATATTGTTTCAGCAGCATTGGCCGCTGCAGTTATTAGCTTTAGCTCTGGCAATATGCCTGCCATTGCTGATCTCAATAAATTTGAAGCTGAGACACCTGGTGAATTTGGAATTGGATCAGCAGCCCAATTTGGATCTGCAGACCTCAGAAGAGCCAATTTCACATCTGCGGATATGAGGGAATCTGATTTCAGTGGTTCAACTTTCAATGGTGCATACATGGAGAAAGCTGTTGCATATAAGGCAAATTTTGCAGGTGCGGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAAGACGCCGTGCTAGTTAGATCGGTTCTCACCCGCAGTGATCTCGGGGGTGCCCTCATTGAAGGAGCTGATTTCAGTGACGCCGTCTTGGACCTCCTCCAGAAGCAGGCACTGCATATTGCTCATGCTCTTTGCAAGTATGCAAGTGGGACGAACCCAACGACAGGGGTGAGCACAAGAGCAAGCCTAGGCTGTGGGAACAGTCGCCGAAATGCTTATGGCAGTCCCTCTTCCCCTCTGCTAAGTGCTCCGCCTCAGAAGCTGCTTAACCGGGATGGATTCTGTGATCAAGGCACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

279

Amino Acids

29.36

Weight (kDa)

8.65

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	110 - 142	2.8e-07	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	126 - 163	1.6e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	6 cut(s)	23, 231, 377, 467, 553, 770
AclWI	GGATC	3 cut(s)	331, 349, 498
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	287, 311, 454
AcyI	GRCGYC	2 cut(s)	525, 600
AdeI	CACNNNGTG	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	625, 683
AgsI	TTSAA	4 cut(s)	293, 408, 415, 581
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	7 cut(s)	246, 252, 296, 437, 512, 587, 781
AluI	AGCT	7 cut(s)	246, 252, 296, 437, 512, 587, 781
Alw21I	GWGCWC	2 cut(s)	695, 769
Alw26I	GTCTC	2 cut(s)	133, 293
AlwI	GGATC	3 cut(s)	331, 349, 498
AlwNI	CAGNNNCTG	2 cut(s)	631, 781
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	221, 233, 329, 781
ApoI	RAATTY	3 cut(s)	287, 311, 454
AspA2I	CCTAGG	1 cut(s)	706
AspS9I	GGNCC	2 cut(s)	499, 610
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	3 cut(s)	320, 541, 700
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	499, 610
AvrII	CCTAGG	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	695, 769
BbvI	GCAGC	4 cut(s)	220, 233, 341, 768
BccI	CCATC	2 cut(s)	481, 788
BceAI	ACGGC	2 cut(s)	512, 587
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	2 cut(s)	133, 293
BfaI	CTAG	2 cut(s)	533, 707
BfmI	CTRYAG	3 cut(s)	111, 234, 345
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	5 cut(s)	222, 231, 234, 330, 782
BlnI	CCTAGG	1 cut(s)	706
BlsI	GCNGC	5 cut(s)	223, 232, 235, 331, 783
Bme1390I	CCNGG	2 cut(s)	306, 791
Bme18I	GGWCC	2 cut(s)	499, 610
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	499, 610
BmiI	GGNNCC	2 cut(s)	69, 571
BmrFI	CCNGG	2 cut(s)	306, 791
BpmI	CTGGAG	2 cut(s)	57, 602
BpuMI	CCSGG	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	525, 600
BsaJI	CCNNGG	2 cut(s)	63, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 683
Bse1I	ACTGG	4 cut(s)	57, 74, 206, 820
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	63, 706
BseGI	GGATG	2 cut(s)	86, 799
BseLI	CCNNNNNNNGG	2 cut(s)	625, 683
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	288, 367, 788
BseNI	ACTGG	4 cut(s)	57, 74, 206, 820
BseRI	GAGGAG	2 cut(s)	60, 605
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	4 cut(s)	220, 233, 341, 768
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	2 cut(s)	695, 769
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	790
BslFI	GGGAC	2 cut(s)	682, 729
BslI	CCNNNNNNNGG	2 cut(s)	625, 683
BsmAI	GTCTC	2 cut(s)	133, 293
BsmFI	GGGAC	2 cut(s)	682, 729
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	574, 695, 769
Bsp143I	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
BspACI	CCGC	6 cut(s)	23, 231, 377, 467, 553, 770
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	3 cut(s)	289, 366, 787
BspLI	GGNNCC	2 cut(s)	69, 571
BspMAI	CTGCAG	2 cut(s)	238, 349
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	3 cut(s)	331, 349, 498
BspQI	GCTCTTC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	57, 74, 206, 820
BssECI	CCNNGG	2 cut(s)	63, 706
BssMI	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
BssNI	GRCGYC	2 cut(s)	525, 600
BssT1I	CCWWGG	2 cut(s)	63, 706
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	2 cut(s)	352, 754
BstACI	GRCGYC	2 cut(s)	525, 600
BstAPI	GCANNNNNTGC	2 cut(s)	458, 631
BstC8I	GCNNGC	3 cut(s)	267, 627, 703
BstDEI	CTNAG	4 cut(s)	297, 353, 761, 774
BstF5I	GGATG	2 cut(s)	86, 799
BstKTI	GATC	7 cut(s)	280, 326, 344, 493, 542, 562, 808
BstMAI	GTCTC	2 cut(s)	133, 293
BstMBI	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 230, 449, 458, 631, 778
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	304, 789
BstSFI	CTRYAG	3 cut(s)	111, 234, 345
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	4 cut(s)	220, 233, 341, 768
BstX2I	RGATCY	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	86, 799
BtsI	GCAGTG	2 cut(s)	562, 629
BtsIMutI	CAGTG	5 cut(s)	406, 562, 601, 629, 813
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	3 cut(s)	267, 627, 703
CaiI	CAGNNNCTG	2 cut(s)	631, 781
Cfr13I	GGNCC	2 cut(s)	499, 610
CseI	GACGC	2 cut(s)	533, 608
CsiI	ACCWGGT	1 cut(s)	304
CviAII	CATG	3 cut(s)	152, 427, 644
DdeI	CTNAG	4 cut(s)	297, 353, 761, 774
DpnI	GATC	7 cut(s)	279, 325, 343, 492, 541, 561, 807
DpnII	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	352, 754
EarI	CTCTTC	2 cut(s)	352, 754
EciI	GGCGGA	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	63, 706
Eco47I	GGWCC	2 cut(s)	499, 610
Eco88I	CYCGRG	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	63, 706
ErhI	CCWWGG	2 cut(s)	63, 706
FaeI	CATG	3 cut(s)	155, 430, 647
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	682, 729
FatI	CATG	3 cut(s)	151, 426, 643
FauI	CCCGC	2 cut(s)	30, 560
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	222, 231, 234, 330, 782
FokI	GGATG	2 cut(s)	73, 806
Fsp4HI	GCNGC	5 cut(s)	222, 231, 234, 330, 782
FspBI	CTAG	2 cut(s)	533, 707
GluI	GCNGC	5 cut(s)	222, 231, 234, 330, 782
GsuI	CTGGAG	2 cut(s)	57, 602
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	790
HgaI	GACGC	2 cut(s)	533, 608
Hin1I	GRCGYC	2 cut(s)	525, 600
Hin1II	CATG	3 cut(s)	155, 430, 647
HinfI	GANTC	3 cut(s)	191, 389, 798
HpaII	CCGG	1 cut(s)	790
HphI	GGTGA	3 cut(s)	320, 541, 700
Hpy188I	TCNGA	4 cut(s)	123, 356, 394, 777
Hpy188III	TCNNGA	1 cut(s)	619
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	1 cut(s)	722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 230, 449, 458, 631, 778
HpyF3I	CTNAG	4 cut(s)	297, 353, 761, 774
Hsp92I	GRCGYC	2 cut(s)	525, 600
Hsp92II	CATG	3 cut(s)	155, 430, 647
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	73, 584, 772
Lsp1109I	GCAGC	4 cut(s)	220, 233, 341, 768
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	533, 707
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	7 cut(s)	279, 325, 343, 492, 541, 561, 807
MboI	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
MboII	GAAGA	3 cut(s)	45, 369, 741
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	3 cut(s)	574, 695, 769
MluCI	AATT	6 cut(s)	287, 311, 318, 335, 364, 454
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	120, 186
MseI	TTAA	4 cut(s)	33, 41, 504, 786
MslI	CAYNNNNRTG	2 cut(s)	150, 485
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	790
MspR9I	CCNGG	2 cut(s)	306, 791
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	6 cut(s)	227, 230, 449, 458, 631, 778
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
NlaIII	CATG	3 cut(s)	155, 430, 647
NlaIV	GGNNCC	2 cut(s)	69, 571
NmuCI	GTSAC	1 cut(s)	596
PaqCI	CACCTGC	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	389, 798
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	223, 232, 235, 331, 783
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	69, 571
PspPI	GGNCC	2 cut(s)	499, 610
PstI	CTGCAG	2 cut(s)	238, 349
PstNI	CAGNNNCTG	2 cut(s)	631, 781
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	1 cut(s)	602
RseI	CAYNNNNRTG	2 cut(s)	150, 485
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	4 cut(s)	33, 41, 504, 786
SatI	GCNGC	5 cut(s)	222, 231, 234, 330, 782
Sau3AI	GATC	7 cut(s)	277, 323, 341, 490, 539, 559, 805
Sau96I	GGNCC	2 cut(s)	499, 610
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	306, 791
SduI	GDGCHC	3 cut(s)	574, 695, 769
SexAI	ACCWGGT	1 cut(s)	304
SfcI	CTRYAG	3 cut(s)	111, 234, 345
SinI	GGWCC	2 cut(s)	499, 610
SmiMI	CAYNNNNRTG	2 cut(s)	150, 485
Sse9I	AATT	6 cut(s)	287, 311, 318, 335, 364, 454
SsiI	CCGC	6 cut(s)	23, 231, 377, 467, 553, 770
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	533, 707
StyD4I	CCNGG	2 cut(s)	304, 789
StyI	CCWWGG	2 cut(s)	63, 706
TaaI	ACNGT	1 cut(s)	722
TasI	AATT	6 cut(s)	287, 311, 318, 335, 364, 454
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	389, 798
Tru1I	TTAA	4 cut(s)	33, 41, 504, 786
Tru9I	TTAA	4 cut(s)	33, 41, 504, 786
TscAI	CASTG	5 cut(s)	406, 562, 601, 636, 820
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	221, 233, 329, 781
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	140, 522
TspRI	CASTG	5 cut(s)	406, 562, 601, 636, 820
Tth111I	GACNNNGTC	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	499, 610
XapI	RAATTY	3 cut(s)	287, 311, 454
XmaJI	CCTAGG	1 cut(s)	706
XspI	CTAG	2 cut(s)	533, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.