Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006782

Physical Location & Seq

Genomic Coordinates Forward (+)

13160583 .. 13163746

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGCGGTGCCTGAGAACCTGAGAAAACAGCTTGCTCTTTCTGTGAGAAGTATCCAGTGGAGCTATGGAATTTTCTGGTCCATTTCAGCCAGACAACCAGGGGTGTTAGAGTGGGGTGATGGGTACTACAATGGAGATATAAAGACCAGAAAAACAGTTCAAGCCGTAGAGCTTGATGCTGACCAAATGGGTTTGCAAAGGAGTGAGCAACTGAGAGAACTTTATGATTCCCTCTCGGTGGGCGAAGCAAGTCCGCAGGCTAGAAGGCCTTCTGCATCATTATCACCCGAAGATCTGGCTGATACAGAGTGGTATTACCTAGTTTGTATGTCGTTCGTCTTCAACATTGGCCAAGGGTTGCCGGGAAGAACATTAGCAAATGGCAAACCTACCTGGCTGTGCAATGCTCACTATGTGGATAGTAAAGTGTTTTCTCGTTCACTACTAGCAAAGAGTGAAGAACTAAAACATCTGTTTTCTGTTTGGTTTTCTTTCGATGGCTGGATTTGTACCTGTCACCCTCAGAGTGCATCCATTCAGACTGTTGTATGCTTTCCATTTTTGGGAGGAGTGATCGAGCTCGGTGTGACTGAGCTGGTTCTAGAGGACCCTAGTCTCATTCAGCATGTTAAAACGTCTTTCTTGGAGGCTCCATATCCCATAATCGCTTCCAAGAGAACCAATCCTAGTGCAGGAAGCACAAGAAACGACAATGATCTTGCTTGTGCCGTGCTTGATGATGATATAGTCGACACCAAATTAATTCCTGTTGTAGGGTGTCAAGAAATGGATGTGACTTCACCTGATGACAGTTCAAATGGTTTGGGTCCTAATCAACTGGCTGATGATTCATTCATGGTGGAAGGGATGAACGGAGGAGCTTCCCAAGTGCAAAGCTGGCAATTTATGGACGATGAGTTAAGTAATTTTGTGCACCATTCCATGGATTCCAGTGATTGTATATCTCAGACTTTGGTGTATCCGGAAAAGGTTCTCTCTGGTCCTAAGACTGAAAAGGCAAATGATCACTGCCCGCAGGAACATCAAGAGTACAATAGCACTAAAAAGACCTCTTTGGATCCTCAAGGCAATGACTTGCAGTATAAAAGTGTTCTTTCTGCTCTTTTGAAGAGCTCACACCAATTGGTTTTGGGGCCACACTTCCAGAATTCTCATCAGGAATCCAGCTTTACCAGTTGGAAGAGAGGAGGGTTTGTAAAATGCCGGACACAAAGAGGTGGAACCCCGCAAAAATTATTGAAGAAGATTTTGCTTGAAGTTCCTCAGATGCATGTTGACTGTGTGCTCGAGCCCCCAGAAGATACCAGCAATGTAAATGAAGTTTGTAGACCAGAGGCCGATGATATTGATACGAATCATGCATTATCTGAGAGGAGGCGGAGGGAAAAACTGAACGAAAGATTTTGCATTTTGAAATCAATGGTTCCCTCGGTTAGCAAGGAGGACAAAGTATCCATATTAGATGATACAATAGAGCATTTGAAAGATCTTGAGAAAAGAGTTGAAGAGTTGGAATCGTTTTGGGAGCTAACAAATTCAGACTCAAAAATGAAGAGGAAACTCCAAGAAACAGTTGAGAGAACATCTGACAACTGTTGCAACCCCAAAATTAGCAATGGGAAGAAGCCTATAGTTTACAAGAGGAAGGCCAGCGACGTTGATGAAACAGAACCAGAAATCAATCACATTGTATCGAAGAACGTTTCAAGTGATAATATAACAGTTAATACGAACAACAAAGATGTTCTAATTGAGATGAAGTTTCCTTGGAGGGAGGGAGTGTTGCTAGAGATCATGGATGCTACAAGCCGGCTTCATTTAGATGCTCACTCGGTTCAATCATCCACCGCGGATGGAATTCTTTCCCTGACCATTAAATCCAGGTTCAAGGGGACGAGTATTGCATCGGCAGGGACAATCAAGCAAGCACTTGATAGATTTGCCAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

658

Amino Acids

73.48

Weight (kDa)

5.4

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	7 - 214	3e-50	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	458 - 505	1.1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	579 - 653	9.1e-21	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63650 AT1G63650 AT1G63650 AT5G41315 AT5G41315 AT5G41315
fragaria_vesca	FvH4_5g02520
malus_domestica	MD06G1084400.v1.1 MD14G1105500.v1.1
prunus_persica	Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1
pyrus_communis	pycom06g08070 pycom14g10100
rosa_chinensis	RchiOBHm_Chr7g0197531
rosa_laevigata	RLG00000003927
rosa_multiflora	Rmu_sc0007007.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258370
rosa_rugosa	Rorug07G0040800
rosa_samantha	Rh1AG185600 Rh1CG171400 Rh7AG165700 Rh7BG167700 Rh7CG174100 Rh7DG167100
rosa_wichuraiana	Rw7G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	943
AccI	GTMKAC	2 cut(s)	750, 1348
AccII	CGCG	1 cut(s)	1871
AccIII	TCCGGA	1 cut(s)	982
AciI	CCGC	7 cut(s)	5, 254, 1034, 1247, 1399, 1869, 1871
AclI	AACGTT	1 cut(s)	1722
AclWI	GGATC	2 cut(s)	1073, 1086
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	4 cut(s)	69, 1168, 1555, 1878
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	125, 511, 1052
AfiI	CCNNNNNNNGG	5 cut(s)	238, 563, 692, 773, 943
AjnI	CCWGG	3 cut(s)	97, 392, 1901
Alw21I	GWGCWC	4 cut(s)	582, 936, 1136, 1308
Alw26I	GTCTC	1 cut(s)	620
Alw44I	GTGCAC	1 cut(s)	932
AlwI	GGATC	2 cut(s)	1073, 1086
AlwNI	CAGNNNCTG	1 cut(s)	1971
Ama87I	CYCGRG	1 cut(s)	1307
Aor13HI	TCCGGA	1 cut(s)	982
AoxI	GGCC	5 cut(s)	266, 349, 1154, 1356, 1668
ApaLI	GTGCAC	1 cut(s)	932
ApoI	RAATTY	4 cut(s)	69, 1168, 1555, 1878
AseI	ATTAAT	1 cut(s)	761
Asp700I	GAANNNNTTC	3 cut(s)	268, 990, 1882
AspS9I	GGNCC	5 cut(s)	78, 607, 827, 1001, 1154
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	4 cut(s)	128, 276, 509, 792
AvaI	CYCGRG	1 cut(s)	1307
AvaII	GGWCC	4 cut(s)	78, 607, 827, 1001
BaeGI	GKGCMC	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	3 cut(s)	582, 1136, 1314
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	4 cut(s)	582, 936, 1136, 1308
BccI	CCATC	3 cut(s)	113, 491, 1868
BceAI	ACGGC	2 cut(s)	149, 713
BciT130I	CCWGG	3 cut(s)	99, 394, 1903
BciVI	GTATCC	3 cut(s)	62, 990, 1483
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	7 cut(s)	261, 320, 446, 602, 612, 687, 1808
BfmI	CTRYAG	1 cut(s)	1650
BfuI	GTATCC	3 cut(s)	62, 990, 1483
BglII	AGATCT	2 cut(s)	292, 1507
Bme1390I	CCNGG	4 cut(s)	99, 363, 394, 1903
Bme18I	GGWCC	4 cut(s)	78, 607, 827, 1001
BmeT110I	CYCGRG	1 cut(s)	1307
BmgT120I	GGNCC	5 cut(s)	78, 607, 827, 1001, 1154
BmiI	GGNNCC	8 cut(s)	9, 609, 651, 828, 1080, 1155, 1243, 1446
BmrFI	CCNGG	4 cut(s)	99, 363, 394, 1903
BmsI	GCATC	7 cut(s)	166, 284, 539, 1278, 1810, 1834, 1934
BoxI	GACNNNNGTC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	1068, 1532
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	1374
BsaJI	CCNNGG	6 cut(s)	98, 352, 942, 1449, 1787, 1869
BsaWI	WCCGGW	1 cut(s)	982
BsaXI	ACNNNNNCTCC	4 cut(s)	1200, 1230, 1787, 1817
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 563, 692, 773, 943
Bse118I	RCCGGY	1 cut(s)	1830
Bse1I	ACTGG	4 cut(s)	55, 843, 951, 1194
Bse3DI	GCAATG	4 cut(s)	409, 1096, 1336, 1642
Bse8I	GATNNNNATC	1 cut(s)	1374
BseAI	TCCGGA	1 cut(s)	982
BseBI	CCWGG	3 cut(s)	99, 394, 1903
BseDI	CCNNGG	6 cut(s)	98, 352, 942, 1449, 1787, 1869
BseGI	GGATG	6 cut(s)	530, 796, 873, 1825, 1862, 1879
BseJI	GATNNNNATC	1 cut(s)	1374
BseLI	CCNNNNNNNGG	5 cut(s)	238, 563, 692, 773, 943
BseMI	GCAATG	4 cut(s)	409, 1096, 1336, 1642
BseMII	CTCAG	7 cut(s)	11, 203, 536, 582, 980, 1298, 1380
BseNI	ACTGG	4 cut(s)	55, 843, 951, 1194
BseRI	GAGGAG	4 cut(s)	582, 891, 1221, 1408
BseSI	GKGCMC	1 cut(s)	936
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	1871
BshFI	GGCC	5 cut(s)	268, 351, 1156, 1358, 1670
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	4 cut(s)	582, 936, 1136, 1308
BsiHKCI	CYCGRG	1 cut(s)	1307
BsiSI	CCGG	4 cut(s)	362, 983, 1225, 1831
BslFI	GGGAC	2 cut(s)	1927, 1948
BslI	CCNNNNNNNGG	5 cut(s)	238, 563, 692, 773, 943
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	1927, 1948
BsnI	GGCC	5 cut(s)	268, 351, 1156, 1358, 1670
BsoBI	CYCGRG	1 cut(s)	1307
Bsp1286I	GDGCHC	5 cut(s)	582, 936, 1136, 1308, 1314
Bsp13I	TCCGGA	1 cut(s)	982
Bsp143I	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	7 cut(s)	5, 254, 1034, 1247, 1399, 1869, 1871
BspANI	GGCC	5 cut(s)	268, 351, 1156, 1358, 1670
BspCNI	CTCAG	8 cut(s)	4, 12, 204, 535, 583, 979, 1297, 1381
BspEI	TCCGGA	1 cut(s)	982
BspFNI	CGCG	1 cut(s)	1871
BspLI	GGNNCC	8 cut(s)	9, 609, 651, 828, 1080, 1155, 1243, 1446
BspPI	GGATC	2 cut(s)	1073, 1086
BspQI	GCTCTTC	1 cut(s)	1124
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	4 cut(s)	409, 1096, 1336, 1642
BsrFI	RCCGGY	1 cut(s)	1830
BsrI	ACTGG	4 cut(s)	55, 843, 951, 1194
BssAI	RCCGGY	1 cut(s)	1830
BssECI	CCNNGG	6 cut(s)	98, 352, 942, 1449, 1787, 1869
BssMI	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
BssT1I	CCWWGG	3 cut(s)	352, 942, 1787
Bst2UI	CCWGG	3 cut(s)	99, 394, 1903
Bst4CI	ACNGT	7 cut(s)	157, 544, 812, 1301, 1594, 1616, 1744
Bst6I	CTCTTC	4 cut(s)	1124, 1196, 1521, 1568
BstC8I	GCNNGC	7 cut(s)	33, 258, 899, 1034, 1672, 1832, 1947
BstDEI	CTNAG	9 cut(s)	12, 20, 212, 522, 591, 966, 1005, 1284, 1389
BstDSI	CCRYGG	2 cut(s)	942, 1869
BstENI	CCTNNNNNAGG	2 cut(s)	690, 771
BstF5I	GGATG	6 cut(s)	530, 796, 873, 1825, 1862, 1879
BstFNI	CGCG	1 cut(s)	1871
BstKTI	GATC	7 cut(s)	295, 576, 718, 1027, 1081, 1510, 1815
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
BstMWI	GCNNNNNNNGC	1 cut(s)	898
BstNI	CCWGG	3 cut(s)	99, 394, 1903
BstNSI	RCATGY	2 cut(s)	629, 1295
BstPAI	GACNNNNGTC	1 cut(s)	612
BstSCI	CCNGG	4 cut(s)	97, 361, 392, 1901
BstSFI	CTRYAG	1 cut(s)	1650
BstSLI	GKGCMC	1 cut(s)	936
BstUI	CGCG	1 cut(s)	1871
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	3 cut(s)	292, 1078, 1507
BstYI	RGATCY	3 cut(s)	292, 1078, 1507
BsuI	GTATCC	3 cut(s)	62, 990, 1483
BsuRI	GGCC	5 cut(s)	268, 351, 1156, 1358, 1670
BtgI	CCRYGG	2 cut(s)	942, 1869
BtsCI	GGATG	6 cut(s)	530, 796, 873, 1825, 1862, 1879
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	3 cut(s)	62, 958, 1027
Cac8I	GCNNGC	7 cut(s)	33, 258, 899, 1034, 1672, 1832, 1947
CaiI	CAGNNNCTG	1 cut(s)	1971
Cfr10I	RCCGGY	1 cut(s)	1830
Cfr13I	GGNCC	5 cut(s)	78, 607, 827, 1001, 1154
Cfr42I	CCGCGG	1 cut(s)	1872
Csp6I	GTAC	3 cut(s)	124, 510, 1051
CviAII	CATG	6 cut(s)	626, 856, 943, 1292, 1379, 1816
CviQI	GTAC	3 cut(s)	124, 510, 1051
DdeI	CTNAG	9 cut(s)	12, 20, 212, 522, 591, 966, 1005, 1284, 1389
DpnI	GATC	7 cut(s)	294, 575, 717, 1026, 1080, 1509, 1814
DpnII	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
DraIII	CACNNNGTG	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	4 cut(s)	1124, 1196, 1521, 1568
EarI	CTCTTC	4 cut(s)	1124, 1196, 1521, 1568
EciI	GGCGGA	1 cut(s)	1414
Ecl136II	GAGCTC	2 cut(s)	580, 1134
Eco130I	CCWWGG	3 cut(s)	352, 942, 1787
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	3 cut(s)	582, 1136, 1314
Eco47I	GGWCC	4 cut(s)	78, 607, 827, 1001
Eco53kI	GAGCTC	2 cut(s)	580, 1134
Eco88I	CYCGRG	1 cut(s)	1307
EcoICRI	GAGCTC	2 cut(s)	580, 1134
EcoNI	CCTNNNNNAGG	2 cut(s)	690, 771
EcoO109I	RGGNCCY	2 cut(s)	607, 827
EcoRI	GAATTC	2 cut(s)	1168, 1878
EcoRII	CCWGG	3 cut(s)	97, 392, 1901
EcoT14I	CCWWGG	3 cut(s)	352, 942, 1787
EcoT22I	ATGCAT	2 cut(s)	1293, 1384
EcoT38I	GRGCYC	3 cut(s)	582, 1136, 1314
ErhI	CCWWGG	3 cut(s)	352, 942, 1787
FaeI	CATG	6 cut(s)	629, 859, 946, 1295, 1382, 1819
FaqI	GGGAC	2 cut(s)	1927, 1948
FatI	CATG	6 cut(s)	625, 855, 942, 1291, 1378, 1815
FauI	CCCGC	2 cut(s)	1041, 1254
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	2 cut(s)	750, 1348
FokI	GGATG	6 cut(s)	517, 803, 880, 1832, 1849, 1886
FriOI	GRGCYC	3 cut(s)	582, 1136, 1314
FspBI	CTAG	7 cut(s)	261, 320, 446, 602, 612, 687, 1808
HaeIII	GGCC	5 cut(s)	268, 351, 1156, 1358, 1670
HapII	CCGG	4 cut(s)	362, 983, 1225, 1831
Hin1II	CATG	6 cut(s)	629, 859, 946, 1295, 1382, 1819
HincII	GTYRAC	2 cut(s)	751, 1297
HindII	GTYRAC	2 cut(s)	751, 1297
HinfI	GANTC	7 cut(s)	227, 848, 947, 1181, 1375, 1535, 1562
HpaII	CCGG	4 cut(s)	362, 983, 1225, 1831
HphI	GGTGA	4 cut(s)	128, 276, 509, 792
Hpy166II	GTNNAC	6 cut(s)	440, 751, 934, 1297, 1349, 1657
Hpy188I	TCNGA	7 cut(s)	525, 540, 969, 1287, 1390, 1561, 1609
Hpy188III	TCNNGA	7 cut(s)	602, 782, 983, 1046, 1165, 1178, 1511
Hpy8I	GTNNAC	6 cut(s)	440, 751, 934, 1297, 1349, 1657
Hpy99I	CGWCG	1 cut(s)	1679
HpyAV	CCTTC	4 cut(s)	258, 279, 857, 1660
HpyCH4III	ACNGT	7 cut(s)	157, 544, 812, 1301, 1594, 1616, 1744
HpyCH4IV	ACGT	3 cut(s)	635, 1677, 1722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	898
HpyF3I	CTNAG	9 cut(s)	12, 20, 212, 522, 591, 966, 1005, 1284, 1389
HpySE526I	ACGT	3 cut(s)	635, 1677, 1722
Hsp92II	CATG	6 cut(s)	629, 859, 946, 1295, 1382, 1819
Kpn2I	TCCGGA	1 cut(s)	982
KroI	GCCGGC	1 cut(s)	1830
KroNI	GCCGGC	1 cut(s)	1832
Ksp22I	TGATCA	1 cut(s)	1024
KspI	CCGCGG	1 cut(s)	1872
Kzo9I	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
LguI	GCTCTTC	1 cut(s)	1124
LmnI	GCTCC	4 cut(s)	60, 655, 878, 1546
LweI	GCATC	7 cut(s)	166, 284, 539, 1278, 1810, 1834, 1934
MaeI	CTAG	7 cut(s)	261, 320, 446, 602, 612, 687, 1808
MaeII	ACGT	3 cut(s)	635, 1677, 1722
MaeIII	GTNAC	3 cut(s)	515, 586, 793
MalI	GATC	7 cut(s)	294, 575, 717, 1026, 1080, 1509, 1814
MboI	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
MfeI	CAATTG	1 cut(s)	1142
MflI	RGATCY	3 cut(s)	292, 1078, 1507
MhlI	GDGCHC	5 cut(s)	582, 936, 1136, 1308, 1314
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	1556
MmeI	TCCRAC	2 cut(s)	1178, 1512
Mox20I	TGGCCA	1 cut(s)	351
Mph1103I	ATGCAT	2 cut(s)	1293, 1384
MroI	TCCGGA	1 cut(s)	982
MroNI	GCCGGC	1 cut(s)	1830
MroXI	GAANNNNTTC	3 cut(s)	268, 990, 1882
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	5 cut(s)	630, 761, 920, 1746, 1896
MslI	CAYNNNNRTG	1 cut(s)	1842
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	1871
MspI	CCGG	4 cut(s)	362, 983, 1225, 1831
MspR9I	CCNGG	4 cut(s)	99, 363, 394, 1903
MunI	CAATTG	1 cut(s)	1142
MvaI	CCWGG	3 cut(s)	99, 394, 1903
MvnI	CGCG	1 cut(s)	1871
MwoI	GCNNNNNNNGC	1 cut(s)	898
NaeI	GCCGGC	1 cut(s)	1832
NciI	CCSGG	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
NgoMIV	GCCGGC	1 cut(s)	1830
NlaIII	CATG	6 cut(s)	629, 859, 946, 1295, 1382, 1819
NlaIV	GGNNCC	8 cut(s)	9, 609, 651, 828, 1080, 1155, 1243, 1446
NmuCI	GTSAC	3 cut(s)	515, 586, 793
NsiI	ATGCAT	2 cut(s)	1293, 1384
NspI	RCATGY	2 cut(s)	629, 1295
PaeR7I	CTCGAG	1 cut(s)	1307
PceI	AGGCCT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	1124
PdiI	GCCGGC	1 cut(s)	1832
PdmI	GAANNNNTTC	3 cut(s)	268, 990, 1882
PfeI	GAWTC	6 cut(s)	227, 848, 947, 1181, 1375, 1535
PflMI	CCANNNNNTGG	1 cut(s)	943
PleI	GAGTC	1 cut(s)	1556
PpsI	GAGTC	1 cut(s)	1556
PpuMI	RGGWCCY	2 cut(s)	607, 827
PshAI	GACNNNNGTC	1 cut(s)	612
PshBI	ATTAAT	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	582, 1136
Psp1406I	AACGTT	1 cut(s)	1722
Psp5II	RGGWCCY	2 cut(s)	607, 827
Psp6I	CCWGG	3 cut(s)	97, 392, 1901
PspGI	CCWGG	3 cut(s)	97, 392, 1901
PspN4I	GGNNCC	8 cut(s)	9, 609, 651, 828, 1080, 1155, 1243, 1446
PspPI	GGNCC	5 cut(s)	78, 607, 827, 1001, 1154
PspPPI	RGGWCCY	2 cut(s)	607, 827
PspXI	VCTCGAGB	1 cut(s)	1307
PstNI	CAGNNNCTG	1 cut(s)	1971
PsuI	RGATCY	3 cut(s)	292, 1078, 1507
RsaI	GTAC	3 cut(s)	125, 511, 1052
RsaNI	GTAC	3 cut(s)	124, 510, 1051
RseI	CAYNNNNRTG	1 cut(s)	1842
SacI	GAGCTC	2 cut(s)	582, 1136
SacII	CCGCGG	1 cut(s)	1872
SalI	GTCGAC	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	1124
SaqAI	TTAA	5 cut(s)	630, 761, 920, 1746, 1896
Sau3AI	GATC	7 cut(s)	292, 573, 715, 1024, 1078, 1507, 1812
Sau96I	GGNCC	5 cut(s)	78, 607, 827, 1001, 1154
SchI	GAGTC	1 cut(s)	1556
ScrFI	CCNGG	4 cut(s)	99, 363, 394, 1903
SduI	GDGCHC	5 cut(s)	582, 936, 1136, 1308, 1314
SfaNI	GCATC	7 cut(s)	166, 284, 539, 1278, 1810, 1834, 1934
SfcI	CTRYAG	1 cut(s)	1650
Sfr274I	CTCGAG	1 cut(s)	1307
Sfr303I	CCGCGG	1 cut(s)	1872
SgrBI	CCGCGG	1 cut(s)	1872
SinI	GGWCC	4 cut(s)	78, 607, 827, 1001
SlaI	CTCGAG	1 cut(s)	1307
SmiMI	CAYNNNNRTG	1 cut(s)	1842
SmlI	CTYRAG	3 cut(s)	1083, 1307, 1511
SmoI	CTYRAG	3 cut(s)	1083, 1307, 1511
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	7 cut(s)	5, 254, 1034, 1247, 1399, 1869, 1871
SspMI	CTAG	7 cut(s)	261, 320, 446, 602, 612, 687, 1808
SstI	GAGCTC	2 cut(s)	582, 1136
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	4 cut(s)	97, 361, 392, 1901
StyI	CCWWGG	3 cut(s)	352, 942, 1787
TaaI	ACNGT	7 cut(s)	157, 544, 812, 1301, 1594, 1616, 1744
TaiI	ACGT	3 cut(s)	638, 1680, 1725
TaqI	TCGA	5 cut(s)	495, 576, 750, 1308, 1715
TatI	WGTACW	1 cut(s)	1050
TfiI	GAWTC	6 cut(s)	227, 848, 947, 1181, 1375, 1535
Tru1I	TTAA	5 cut(s)	630, 761, 920, 1746, 1896
Tru9I	TTAA	5 cut(s)	630, 761, 920, 1746, 1896
TscAI	CASTG	3 cut(s)	62, 958, 1034
TseFI	GTSAC	3 cut(s)	515, 586, 793
Tsp45I	GTSAC	3 cut(s)	515, 586, 793
TspDTI	ATGAA	8 cut(s)	840, 844, 884, 1353, 1586, 1698, 1793, 1826
TspGWI	ACGGA	1 cut(s)	888
TspRI	CASTG	3 cut(s)	62, 958, 1034
Van91I	CCANNNNNTGG	1 cut(s)	943
VneI	GTGCAC	1 cut(s)	932
VpaK11BI	GGWCC	4 cut(s)	78, 607, 827, 1001
VspI	ATTAAT	1 cut(s)	761
XagI	CCTNNNNNAGG	2 cut(s)	690, 771
XapI	RAATTY	4 cut(s)	69, 1168, 1555, 1878
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	2 cut(s)	629, 1295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	1307
XmiI	GTMKAC	2 cut(s)	750, 1348
XmnI	GAANNNNTTC	3 cut(s)	268, 990, 1882
XspI	CTAG	7 cut(s)	261, 320, 446, 602, 612, 687, 1808
Zsp2I	ATGCAT	2 cut(s)	1293, 1384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.