Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006896

Physical Location & Seq

Genomic Coordinates Forward (+)

15631035 .. 15631628

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGAGAGCTGGTGAGGACAAGGACTCGTCTGTGACAGTTCAGACACTGAGAAAAGAAATAAGAGAAGCTGTCGGTAAAATTTCTTCAAAAGGTATTGCTGAAAACCTTTTCAATCCAAAGCTTCTTCATGCCTTTAGGACTGCTGTAGCAGGGGGACCTCAAACTGAACCTGTTAAGAAGGTACCACATTTGGCACTGAACGCAAAGAAGGCAATATTGCAGAAGGGAAAAGTACGTGAGAATCTAACAAAAAAGATTTATGGGACATCCAATGGAAGAAGAACATGTGCGTGGGACCGGAACTGGCAAATCGAATTTTGGAAGCATCGCAGCTTAGGAACTACAGAGCCTGAAAAGATTGAGACTTTGAAATCAGTTCTTAATCTTCTGAAAGAGAGGTCAGAGAGTGTAGATACAGAGCAGGAGTCCGATAAGCAGTCCACAAATCCAATTCTTTCCAGGTTGTATTTAGCAGATGTATTGGGACTCCCAAGAAAAGACCGTAAGGTCTTTCTATTAAGAAATATTTTGAACATGGAAAAGGGTGTTGCCTTCTGTTGGTCTTTGAATGGAAAATTAGAAAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

198

Amino Acids

22.48

Weight (kDa)

10.0

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10930 AT4G10930
fragaria_vesca	FvH4_5g04850 FvH4_5g04850 FvH4_5g04850
malus_domestica	MD06G1109300.v1.1 MD12G1080900.v1.1 MD14G1130300.v1.1
prunus_persica	Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1
pyrus_communis	pycom06g10260 pycom06g10270 pycom06g10280
rosa_chinensis	RchiOBHm_Chr7g0194241
rosa_laevigata	RLG00000004207
rosa_multiflora	Rmu_co8489007.1_g000001 Rmu_sc0000901.1_g000004 Rmu_sc0009433.1_g000017
rosa_roxburghii	Rroxscaffold_3G00261470
rosa_rugosa	Rorug07G0014700
rosa_samantha	Rh7AG142000 Rh7BG142400 Rh7CG146100 Rh7DG143400
rosa_wichuraiana	Rw7G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	81, 317
AfaI	GTAC	2 cut(s)	186, 237
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	90, 115, 373, 535, 571
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	4 cut(s)	11, 71, 124, 336
AluI	AGCT	4 cut(s)	11, 71, 124, 336
Alw26I	GTCTC	1 cut(s)	359
AlwNI	CAGNNNCTG	2 cut(s)	49, 353
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	81, 317
Asp718I	GGTACC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	158, 298
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	158, 298
BanI	GGYRCC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BbvI	GCAGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	147, 345
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	2 cut(s)	158, 298
BmgT120I	GGNCC	2 cut(s)	158, 298
BmiI	GGNNCC	3 cut(s)	159, 186, 299
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	4 cut(s)	171, 280, 311, 501
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	4 cut(s)	171, 280, 311, 501
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	159, 186, 299
BspT107I	GGYRCC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	40, 506
BstBAI	YACGTR	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	50, 337
BstF5I	GGATG	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 212
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	2 cut(s)	147, 345
BstV1I	GCAGC	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	47, 197
CaiI	CAGNNNCTG	2 cut(s)	49, 353
Cfr13I	GGNCC	2 cut(s)	158, 298
Csp6I	GTAC	2 cut(s)	185, 236
CviAII	CATG	3 cut(s)	131, 288, 538
CviJI	RGCY	5 cut(s)	11, 71, 124, 336, 352
CviKI_1	RGCY	5 cut(s)	11, 71, 124, 336, 352
CviQI	GTAC	2 cut(s)	185, 236
DdeI	CTNAG	2 cut(s)	50, 337
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	158, 298
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	134, 291, 541
FaiI	YATR	4 cut(s)	132, 264, 289, 539
FaqI	GGGAC	4 cut(s)	171, 280, 311, 501
FatI	CATG	3 cut(s)	130, 287, 537
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	334
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	3 cut(s)	134, 291, 541
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	26, 244, 428, 489
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	45, 393, 406, 433
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	4 cut(s)	175, 205, 220, 565
HpyCH4III	ACNGT	2 cut(s)	40, 506
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 212
HpyF3I	CTNAG	2 cut(s)	50, 337
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	134, 291, 541
KpnI	GGTACC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	138, 186, 292, 314, 366, 410, 448, 475
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	78, 119, 291, 294, 380
MluCI	AATT	4 cut(s)	81, 317, 453, 578
MlyI	GAGTC	3 cut(s)	20, 437, 483
MnlI	CCTC	3 cut(s)	10, 171, 393
MseI	TTAA	3 cut(s)	177, 384, 521
MslI	CAYNNNNRTG	1 cut(s)	292
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	203, 212
NlaIII	CATG	3 cut(s)	134, 291, 541
NlaIV	GGNNCC	3 cut(s)	159, 186, 299
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	291
PciI	ACATGT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	20, 436, 483
PpsI	GAGTC	3 cut(s)	20, 436, 483
Ppu21I	YACGTR	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	159, 186, 299
PspPI	GGNCC	2 cut(s)	158, 298
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	2 cut(s)	49, 353
RsaI	GTAC	2 cut(s)	186, 237
RsaNI	GTAC	2 cut(s)	185, 236
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	177, 384, 521
SatI	GCNGC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	158, 298
SchI	GAGTC	3 cut(s)	20, 437, 483
ScrFI	CCNGG	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	2 cut(s)	147, 345
SinI	GGWCC	2 cut(s)	158, 298
SmiMI	CAYNNNNRTG	1 cut(s)	292
Sse9I	AATT	4 cut(s)	81, 317, 453, 578
SspI	AATATT	2 cut(s)	219, 529
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	40, 506
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	81, 317, 453, 578
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	177, 384, 521
Tru9I	TTAA	3 cut(s)	177, 384, 521
TscAI	CASTG	2 cut(s)	54, 204
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	54, 204
VpaK11BI	GGWCC	2 cut(s)	158, 298
XapI	RAATTY	2 cut(s)	81, 317
XceI	RCATGY	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.