pycom06g10330

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009082
Physical Location & Seq
Forward (+)
15662455 .. 15664708
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGGAGATTATTTCCCTCACTCTCTCTTCTCCCCAAACCTTCTTTGTAGCCCTAATTTTTACTTTTCTCACCTTTTTCCTCGCTCTCCTCGCCGTCCGATCACTCCCCGGCAAACCCAAATCGGGCGGCGCTGCCTCTGCCACCTCGTCGTCGAGTCGAAGCGGAAAGGCCTGCACTTGCTGTACTTGTCACCGGGAAGAGGTCGTTTCGGGCTCCGATTCGGGGCCCGTGAGCGCGCCGCACTTGAACGGCGGGACGGGTACGGATTTGACGGAGAAGCCGACGGCGGCGGCGGCCGTACTGGAGCGGCATACGGGCCCGTCGATGATGGAGCAGCTGGTTCCGGAGATTACGACGCATGCCCTTAGCTATCTGGACTACCCGAGCCTCTGTAGGCTTTCGATGACCAATTGGACCATGCGGAAGGCCGCCAATGATGATAATGCTTGGAAGGCGCTTTATCATAAGGACTTCACTTTGGAACAGGATAGCGTAACACCAGTTAAAGGATGGAAAGCTTACTATGCTGCTACAAGAGCGATTGTGAATGTCAATACTGAATTCTTTAACTTTATCCGAGGAAGGTCACTTCCAGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATGCCTCTGGAGAACTCTTTTCGGGGTACAATGCTGTTATACAGAGTTGGCAACTAGCATTTAATTGGGAGCAAGGGGTTAACTTTCAGATTCGAGATGTGCGTGCACGGGTTCTGACAGACATGGCTTGGGTTACCATGAAAACCTATGTTGAAATCGAAACTGGGCCATTCAGCGTGACCAACGTCTATGAGTTCCATAACGGGCGATGGTACATGGTGCATCATCATAGCTCTGTGATGGATGTAGAGGGAGAACAGCAGATTGTGCACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

306

Amino Acids

33.94

Weight (kDa)

6.41

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 115 - 155 3.9e-06 F-box-like
SnoaL_3 PF13474 181 - 294 5.1e-27 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AccII CGCG 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 560
AfaI GTAC 5 cut(s) 184, 262, 300, 668, 854
AfiI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
AgsI TTSAA 2 cut(s) 247, 794
AluBI AGCT 4 cut(s) 337, 369, 518, 873
AluI AGCT 4 cut(s) 337, 369, 518, 873
Alw21I GWGCWC 2 cut(s) 748, 912
Alw44I GTGCAC 2 cut(s) 744, 908
Ama87I CYCGRG 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 6 cut(s) 168, 224, 294, 316, 426, 806
ApaI GGGCCC 2 cut(s) 228, 320
ApaLI GTGCAC 2 cut(s) 744, 908
ApeKI GCWGC 3 cut(s) 131, 334, 527
ApoI RAATTY 1 cut(s) 560
AspLEI GCGC 4 cut(s) 131, 236, 238, 457
AspS9I GGNCC 6 cut(s) 224, 225, 316, 317, 414, 806
AsuC2I CCSGG 2 cut(s) 108, 194
AsuHPI GGTGA 2 cut(s) 61, 182
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 4 cut(s) 228, 320, 748, 912
BanII GRGCYC 3 cut(s) 215, 228, 320
Bbv12I GWGCWC 2 cut(s) 748, 912
BbvI GCAGC 3 cut(s) 118, 346, 514
BccI CCATC 4 cut(s) 322, 504, 843, 874
BceAI ACGGC 4 cut(s) 77, 265, 281, 300
BcnI CCSGG 2 cut(s) 108, 194
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 391
BfoI RGCGCY 2 cut(s) 132, 458
Bme1390I CCNGG 2 cut(s) 108, 194
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 6 cut(s) 224, 225, 316, 317, 414, 806
BmiI GGNNCC 5 cut(s) 214, 225, 226, 318, 342
BmrFI CCNGG 2 cut(s) 108, 194
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 1 cut(s) 871
BmuI ACTGGG 1 cut(s) 813
BoxI GACNNNNGTC 1 cut(s) 824
BpmI CTGGAG 2 cut(s) 323, 669
Bpu10I CCTNAGC 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 108, 194
BsaJI CCNNGG 2 cut(s) 106, 577
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
Bse1I ACTGG 3 cut(s) 306, 500, 808
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 106, 577
BseGI GGATG 2 cut(s) 515, 889
BseLI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
BseNI ACTGG 3 cut(s) 306, 500, 808
BsePI GCGCGC 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 4 cut(s) 228, 320, 748, 912
BseX3I CGGCCG 1 cut(s) 294
BseXI GCAGC 3 cut(s) 118, 346, 514
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 6 cut(s) 170, 226, 296, 318, 428, 808
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 748, 912
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 3 cut(s) 108, 193, 344
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 6 cut(s) 170, 226, 296, 318, 428, 808
BsoBI CYCGRG 1 cut(s) 382
Bsp120I GGGCCC 2 cut(s) 224, 316
Bsp1286I GDGCHC 5 cut(s) 215, 228, 320, 748, 912
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 1 cut(s) 98
BspANI GGCC 6 cut(s) 170, 226, 296, 318, 428, 808
BspEI TCCGGA 1 cut(s) 343
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 5 cut(s) 214, 225, 226, 318, 342
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 3 cut(s) 306, 500, 808
BssECI CCNNGG 2 cut(s) 106, 577
BssHII GCGCGC 1 cut(s) 234
BssMI GATC 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 31, 192
BstAPI GCANNNNNTGC 1 cut(s) 907
BstC8I GCNNGC 4 cut(s) 172, 236, 360, 744
BstDEI CTNAG 1 cut(s) 365
BstEII GGTNACC 1 cut(s) 772
BstF5I GGATG 2 cut(s) 515, 889
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 2 cut(s) 132, 458
BstHHI GCGC 4 cut(s) 131, 236, 238, 457
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
BstNSI RCATGY 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 824
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 2 cut(s) 106, 192
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 4 cut(s) 228, 320, 748, 912
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 118, 346, 514
BstZI CGGCCG 1 cut(s) 294
BsuRI GGCC 6 cut(s) 170, 226, 296, 318, 428, 808
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 2 cut(s) 515, 889
Cac8I GCNNGC 4 cut(s) 172, 236, 360, 744
CfoI GCGC 4 cut(s) 131, 236, 238, 457
Cfr13I GGNCC 6 cut(s) 224, 225, 316, 317, 414, 806
CseI GACGC 1 cut(s) 364
Csp6I GTAC 5 cut(s) 183, 261, 299, 667, 853
CviAII CATG 6 cut(s) 359, 418, 641, 763, 778, 856
CviQI GTAC 5 cut(s) 183, 261, 299, 667, 853
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 294
EagI CGGCCG 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 31, 192
EarI CTCTTC 2 cut(s) 31, 192
EclXI CGGCCG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 3 cut(s) 215, 228, 320
Eco47I GGWCC 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 560
EcoT38I GRGCYC 3 cut(s) 215, 228, 320
FaeI CATG 6 cut(s) 362, 421, 644, 766, 781, 859
FaqI GGGAC 1 cut(s) 268
FatI CATG 6 cut(s) 358, 417, 640, 762, 777, 855
FauI CCCGC 1 cut(s) 245
FokI GGATG 2 cut(s) 522, 896
FriOI GRGCYC 3 cut(s) 215, 228, 320
FspBI CTAG 1 cut(s) 695
GlaI GCGC 4 cut(s) 130, 235, 237, 456
GsuI CTGGAG 2 cut(s) 323, 669
HaeII RGCGCY 2 cut(s) 132, 458
HaeIII GGCC 6 cut(s) 170, 226, 296, 318, 428, 808
HapII CCGG 3 cut(s) 108, 193, 344
HgaI GACGC 1 cut(s) 364
HhaI GCGC 4 cut(s) 131, 236, 238, 457
Hin1II CATG 6 cut(s) 362, 421, 644, 766, 781, 859
Hin6I GCGC 4 cut(s) 129, 234, 236, 455
HinP1I GCGC 4 cut(s) 129, 234, 236, 455
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 4 cut(s) 154, 218, 601, 730
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 3 cut(s) 108, 193, 344
HphI GGTGA 2 cut(s) 61, 182
Hpy166II GTNNAC 3 cut(s) 721, 746, 910
Hpy188I TCNGA 5 cut(s) 98, 217, 578, 729, 756
Hpy188III TCNNGA 5 cut(s) 344, 374, 593, 648, 734
Hpy8I GTNNAC 3 cut(s) 721, 746, 910
Hpy99I CGWCG 5 cut(s) 151, 154, 286, 325, 358
HpyAV CCTTC 4 cut(s) 49, 418, 445, 576
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 5 cut(s) 174, 620, 746, 862, 910
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 6 cut(s) 362, 421, 644, 766, 781, 859
HspAI GCGC 4 cut(s) 129, 234, 236, 455
Kpn2I TCCGGA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 4 cut(s) 218, 304, 331, 709
Lsp1109I GCAGC 3 cut(s) 118, 346, 514
LweI GCATC 1 cut(s) 871
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 5 cut(s) 188, 493, 585, 772, 817
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 98
MboII GAAGA 2 cut(s) 18, 209
MfeI CAATTG 1 cut(s) 409
MhlI GDGCHC 5 cut(s) 215, 228, 320, 748, 912
MluCI AATT 4 cut(s) 54, 409, 560, 703
MlyI GAGTC 2 cut(s) 163, 610
MroI TCCGGA 1 cut(s) 343
MseI TTAA 4 cut(s) 504, 567, 702, 720
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 3 cut(s) 108, 193, 344
MspR9I CCNGG 2 cut(s) 108, 194
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 622
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
NciI CCSGG 2 cut(s) 108, 194
NdeII GATC 1 cut(s) 98
NlaIII CATG 6 cut(s) 362, 421, 644, 766, 781, 859
NlaIV GGNNCC 5 cut(s) 214, 225, 226, 318, 342
NmuCI GTSAC 3 cut(s) 188, 585, 817
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PauI GCGCGC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 278, 320, 739
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 218, 730
PleI GAGTC 2 cut(s) 162, 609
PpsI GAGTC 2 cut(s) 162, 609
PshAI GACNNNNGTC 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 772
PspN4I GGNNCC 5 cut(s) 214, 225, 226, 318, 342
PspOMI GGGCCC 2 cut(s) 224, 316
PspPI GGNCC 6 cut(s) 224, 225, 316, 317, 414, 806
PteI GCGCGC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 5 cut(s) 184, 262, 300, 668, 854
RsaNI GTAC 5 cut(s) 183, 261, 299, 667, 853
SaqAI TTAA 4 cut(s) 504, 567, 702, 720
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 6 cut(s) 224, 225, 316, 317, 414, 806
SchI GAGTC 2 cut(s) 163, 610
ScrFI CCNGG 2 cut(s) 108, 194
SduI GDGCHC 5 cut(s) 215, 228, 320, 748, 912
SfaNI GCATC 1 cut(s) 871
SfcI CTRYAG 1 cut(s) 391
SinI GGWCC 1 cut(s) 414
SphI GCATGC 1 cut(s) 362
Sse9I AATT 4 cut(s) 54, 409, 560, 703
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 1 cut(s) 695
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 106, 192
TaiI ACGT 1 cut(s) 828
TaqI TCGA 6 cut(s) 152, 157, 323, 401, 733, 798
TasI AATT 4 cut(s) 54, 409, 560, 703
TatI WGTACW 1 cut(s) 182
TauI GCSGC 7 cut(s) 129, 241, 290, 293, 296, 310, 431
TfiI GAWTC 2 cut(s) 218, 730
Tru1I TTAA 4 cut(s) 504, 567, 702, 720
Tru9I TTAA 4 cut(s) 504, 567, 702, 720
TseFI GTSAC 3 cut(s) 188, 585, 817
TseI GCWGC 3 cut(s) 131, 334, 527
Tsp45I GTSAC 3 cut(s) 188, 585, 817
TspDTI ATGAA 2 cut(s) 629, 794
TspGWI ACGGA 2 cut(s) 278, 287
VneI GTGCAC 2 cut(s) 744, 908
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 560
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.