Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005103

Physical Location & Seq

Genomic Coordinates Forward (+)

15913985 .. 15915229

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGACGACTCTGCTCCCAGAGACCGCCCAAAAGATCCTAACCCAAGAAGCCCTCCGCTCCGCTGCCAAACAATCCCAGCGCTGCCTCACAACCCCGGTCCGCCTCCGCCGCGCCATCAAAAAATACCTCCGAGGGCAGGATGAGCCCCACATGAAGAGGAAGGTGCTGAGGCTATCGGAATCCTTCAGCCAAATCAAGGATGTGAACTCGCAGCTTGTTACGGCGACTTCACAGCAGCTCGTTGAGGACCCTTTGCGGTCTGTCGACCAATCGCAGAGGTGGAAGATCAGGAGCAACTATGGAGATATCGGTCTCACCTACAGAGACGACGAGACCATTGCTTATGTTGCTTCCAGGATGCCTGCTGTCTTCACTGCCTGTCACAGAGTTCTCAAGGAGGTTCGTAGAAGGATACCTGATTTCTCTCCAGCTAAAGATTTTGGAGCTGGCATGGGCTCGGCTTTCTGGGCACTACGAGAAGTCTGGCCACATTCCTTGGAGAAAGTTAATTTAAGTGGAGCCATCCCAATCAATGCAGCGGGCTGGGCAGAAGCTTACACAAGGTCAGAAGAACTTGCCACTTATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

198

Amino Acids

22.31

Weight (kDa)

9.76

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	112 - 181	1.3e-11	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64600
fragaria_vesca	FvH4_5g11440 FvH4_5g11440 FvH4_5g11440 FvH4_5g11440
malus_domestica	MD06G1113800.v1.1 MD14G1134800.v1.1
prunus_persica	Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1 Prupe.5G126500_v2.0.a1
pyrus_communis	pycom06g10630
rosa_chinensis	RchiOBHm_Chr2g0131571 RchiOBHm_Chr2g0164461 RchiOBHm_Chr7g0186411 RchiOBHm_Chr7g0186431
rosa_laevigata	RLG00000004846
rosa_multiflora	Rmu_sc0000645.1_g000044
rosa_roxburghii	Rroxscaffold_2G00076410 Rroxscaffold_3G00268160
rosa_rugosa	Rorug02G0594900 Rorug06G0474000 Rorug06G0474000
rosa_samantha	Rh7AG067300 Rh7BG083100 Rh7BG171200 Rh7CG080600 Rh7CG235500 Rh7DG081200
rosa_wichuraiana	Rw7G006770 Rw7G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	114
AciI	CCGC	8 cut(s)	27, 58, 63, 103, 109, 112, 259, 542
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	139, 199
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	217, 241, 434, 449, 557
AluI	AGCT	5 cut(s)	217, 241, 434, 449, 557
Alw26I	GTCTC	4 cut(s)	17, 320, 321, 329
AlwI	GGATC	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	5 cut(s)	65, 84, 214, 238, 539
AspLEI	GCGC	2 cut(s)	84, 116
AspS9I	GGNCC	2 cut(s)	100, 250
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	100, 250
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	150, 461
BbsI	GAAGAC	1 cut(s)	364
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	52, 71, 226, 250, 551
BccI	CCATC	2 cut(s)	125, 533
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	3 cut(s)	29, 323, 357
BciT130I	CCWGG	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	4 cut(s)	17, 320, 321, 329
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	6 cut(s)	66, 85, 112, 215, 239, 540
BlsI	GCNGC	6 cut(s)	67, 86, 113, 216, 240, 541
Bme1390I	CCNGG	2 cut(s)	98, 358
Bme18I	GGWCC	2 cut(s)	100, 250
BmgT120I	GGNCC	2 cut(s)	100, 250
BmiI	GGNNCC	2 cut(s)	252, 523
BmrFI	CCNGG	2 cut(s)	98, 358
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	98
BsaI	GGTCTC	3 cut(s)	17, 320, 329
BsaJI	CCNNGG	3 cut(s)	96, 133, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 199
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	96, 133, 498
BseGI	GGATG	4 cut(s)	148, 208, 366, 525
BseLI	CCNNNNNNNGG	2 cut(s)	139, 199
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	52, 71, 226, 250, 551
BseYI	CCCAGC	2 cut(s)	78, 546
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	139, 199
BsmAI	GTCTC	4 cut(s)	17, 320, 321, 329
BsmBI	CGTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	3 cut(s)	17, 320, 329
Bsp1286I	GDGCHC	3 cut(s)	150, 461, 475
Bsp143I	GATC	2 cut(s)	36, 288
BspACI	CCGC	8 cut(s)	27, 58, 63, 103, 109, 112, 259, 542
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	252, 523
BspPI	GGATC	1 cut(s)	31
BspTNI	GGTCTC	3 cut(s)	17, 320, 329
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	96, 133, 498
BssMI	GATC	2 cut(s)	36, 288
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	366, 451, 544
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	148, 208, 366, 525
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 116
BstKTI	GATC	2 cut(s)	39, 291
BstMAI	GTCTC	4 cut(s)	17, 320, 321, 329
BstMBI	GATC	2 cut(s)	36, 288
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 145, 350, 470, 548
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	96, 356
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	52, 71, 226, 250, 551
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	148, 208, 366, 525
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	366, 451, 544
CfoI	GCGC	2 cut(s)	84, 116
Cfr13I	GGNCC	2 cut(s)	100, 250
CpoI	CGGWCCG	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	2 cut(s)	154, 454
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	38, 290
DpnII	GATC	2 cut(s)	36, 288
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	2 cut(s)	92, 98
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	2 cut(s)	150, 461
Eco31I	GGTCTC	3 cut(s)	17, 320, 329
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	100, 250
Eco47III	AGCGCT	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	150, 461
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	157, 457
FaiI	YATR	5 cut(s)	155, 303, 348, 455, 592
FatI	CATG	2 cut(s)	153, 453
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	6 cut(s)	66, 85, 112, 215, 239, 540
FokI	GGATG	4 cut(s)	155, 215, 373, 512
FriOI	GRGCYC	2 cut(s)	150, 461
Fsp4HI	GCNGC	6 cut(s)	66, 85, 112, 215, 239, 540
GlaI	GCGC	2 cut(s)	83, 115
GluI	GCNGC	6 cut(s)	66, 85, 112, 215, 239, 540
GsaI	CCCAGC	2 cut(s)	82, 550
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	84, 116
Hin1II	CATG	2 cut(s)	157, 457
Hin6I	GCGC	2 cut(s)	82, 114
HinP1I	GCGC	2 cut(s)	82, 114
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	10, 182
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	208, 268
Hpy188I	TCNGA	3 cut(s)	134, 181, 571
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	208, 268
Hpy99I	CGWCG	2 cut(s)	10, 335
HpyAV	CCTTC	3 cut(s)	157, 196, 405
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 145, 350, 470, 548
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	157, 457
HspAI	GCGC	2 cut(s)	82, 114
Kzo9I	GATC	2 cut(s)	36, 288
LmnI	GCTCC	5 cut(s)	21, 65, 294, 446, 521
Lsp1109I	GCAGC	5 cut(s)	52, 71, 226, 250, 551
LweI	GCATC	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	220, 383
MalI	GATC	2 cut(s)	38, 290
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	36, 288
MboII	GAAGA	4 cut(s)	169, 298, 364, 584
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	3 cut(s)	150, 461, 475
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	1 cut(s)	511
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	1 cut(s)	4
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	2 cut(s)	510, 515
Msp20I	TGGCCA	1 cut(s)	490
MspA1I	CMGCKG	2 cut(s)	65, 542
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	98, 358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	111, 145, 350, 470, 548
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	36, 288
NlaIII	CATG	2 cut(s)	157, 457
NlaIV	GGNNCC	2 cut(s)	252, 523
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	67, 86, 113, 216, 240, 541
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	356
PspFI	CCCAGC	2 cut(s)	78, 546
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	252, 523
PspPI	GGNCC	2 cut(s)	100, 250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	36
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	510, 515
SatI	GCNGC	6 cut(s)	66, 85, 112, 215, 239, 540
Sau3AI	GATC	2 cut(s)	36, 288
Sau96I	GGNCC	2 cut(s)	100, 250
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	98, 358
SduI	GDGCHC	3 cut(s)	150, 461, 475
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	100, 250
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	8 cut(s)	27, 58, 63, 103, 109, 112, 259, 542
StyD4I	CCNGG	2 cut(s)	96, 356
StyI	CCWWGG	1 cut(s)	498
TaqI	TCGA	1 cut(s)	267
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	511
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	510, 515
Tru9I	TTAA	2 cut(s)	510, 515
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	5 cut(s)	65, 84, 214, 238, 539
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	170, 579
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	100, 250
XmiI	GTMKAC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.