Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Reverse (-)

16148911 .. 16153296

Gene Structure 4386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTGCTTGGTAAACGATCAAACAAAGAGACCAACAGCAGAGAAATTATTAAAACACTCCTTTTTCAAGCATGCAAAACCTCCAGAGCTTTCTATAAAGAAATTGTTTACGGACTTACCACCTCTTTGGAATCGTGTAAAAGCCCTCCAGCTTAAAGATGCAGCACAACTGGCTTTAAAGAAAATGCCGTCAGCAGAACAAGAGGCAATGTCACAGAGTGAGTACCAGCGAGGAGTTAGTGCCTGGAACTTTGACGTTGAGGATTTAAAAGCTCAAGCATCCCTGGTGCGAGATGATGATGAAATGATGGATGAAGATGAAAAATTTAAACCTGTTAGTGGTGATAAGATTGAAACTAGTTGGCGTTCCAGTTTGGGGAAGTTGAACGAAAATAATGAATCATATTGGACTGATTACAAAGGAGAAATCAATGGTGATGAATCACAACAGGTTGAATGCTTAAACAAAAAGGGCAAGGATCTTGAAAGTAATTTATTGGAATCTGCTGGCCAGCAGAAAACAGGCTGGAAGACAAATGAATCAAGCTCTGAGGCAACAGCATCTACATCAGAAAAAGACACGGTGCAGGCCAAGCCTAAACCTCTTATTGTGAAAAGTCGTCAAACGCAGAGTGGTCCACTCACACCTGGTGCTGGACTTGGTCATTCAGTATCAGAAAGGGGCCACATCTTTGAAAGGAATGAGAATGAAAATCAACCTATAATTGATAAAGGTAAATGCGAAGTACGACGAACACCAAGCTTTAGTGGTCCACTGATGCTTCCCAATCGAGCTTCAGCAAACAGTTTATCAGCTCCTATAAAATCTTCTGGAGGATTTAGAGATTCTTTGGATGACAAGTCAAAGGCTAATTTGGTGCAAATCAGGGGGAGATTTTCAGTGACATCAGAAAATTTGGATCTTGTAAAGGATATTCCATCGAGTCCAGTACCTCGTCGTTCTTCCCAGGGATCACCTCTGAGAAAGTCTGCTAGCGTTGGTGATTGGGTATTTGTCTCCAGGCAAATGCCTGCCACTCTGTCAATGAAGGAGTTCAACAACAGCAACGTACCTGCATCACTTCTCCTGCCTCAGCTTCAGAATCTTTTTCAACAGACGTTGATTCAACAGGATATTATTATGAATTTGCTAAACAGCTTGCAACCAGCTGAGGCAGTAGAAGCTACTCAAAATGGAAAGTTACCTCCATTGCCTCGCAGTTCTGAGAACAATGGAAATGTTGAAACTGCAGTTTCTGAGAGGGAGCGTTTATTGCTCGCCAAAGTATCGGAGCTTCAAGCCAGGATGAGCAACTTGAGTGATGAACTGAATGCTGAAAAGATGAGACACAATCAATTGCAACAACAGCTAAATGCTGTATGTGGGCAAGAAAATGGAGAAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

470

Amino Acids

52.07

Weight (kDa)

6.6

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1081
AclWI	GGATC	3 cut(s)	486, 927, 979
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	323, 913, 1144
AcuI	CTGAAG	2 cut(s)	780, 1082
AdeI	CACNNNGTG	2 cut(s)	218, 650
AfaI	GTAC	4 cut(s)	224, 747, 951, 1071
AfiI	CCNNNNNNNGG	3 cut(s)	338, 375, 653
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
Alw26I	GTCTC	3 cut(s)	22, 1021, 1339
AlwI	GGATC	3 cut(s)	486, 927, 979
AlwNI	CAGNNNCTG	1 cut(s)	1256
AoxI	GGCC	3 cut(s)	508, 588, 682
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	3 cut(s)	323, 913, 1144
Asp700I	GAANNNNTTC	1 cut(s)	1052
AspS9I	GGNCC	3 cut(s)	635, 682, 770
AsuHPI	GGTGA	4 cut(s)	353, 446, 966, 1013
AsuNHI	GCTAGC	1 cut(s)	992
AvaII	GGWCC	2 cut(s)	635, 770
BalI	TGGCCA	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	1278, 1310
BbsI	GAAGAC	1 cut(s)	536
BbvCI	CCTCAGC	2 cut(s)	1092, 1170
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	301, 946
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
BcoDI	GTCTC	3 cut(s)	22, 1021, 1339
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 993
BfmI	CTRYAG	1 cut(s)	1248
BfuAI	ACCTGC	1 cut(s)	1081
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
Bme18I	GGWCC	2 cut(s)	635, 770
BmgT120I	GGNCC	3 cut(s)	635, 682, 770
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
BmsI	GCATC	5 cut(s)	148, 287, 569, 768, 1085
BmtI	GCTAGC	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	4 cut(s)	66, 131, 852, 1003
Bpu10I	CCTNAGC	2 cut(s)	1092, 1170
BpuEI	CTTGAG	2 cut(s)	258, 1336
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	282, 966, 967
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 375, 653
Bse1I	ACTGG	3 cut(s)	174, 369, 947
Bse3DI	GCAATG	2 cut(s)	213, 1208
BseBI	CCWGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
BseDI	CCNNGG	3 cut(s)	282, 966, 967
BseGI	GGATG	4 cut(s)	278, 316, 859, 1311
BseLI	CCNNNNNNNGG	3 cut(s)	338, 375, 653
BseMI	GCAATG	2 cut(s)	213, 1208
BseMII	CTCAG	6 cut(s)	540, 971, 1106, 1161, 1215, 1248
BseNI	ACTGG	3 cut(s)	174, 369, 947
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	3 cut(s)	510, 590, 684
BslI	CCNNNNNNNGG	3 cut(s)	338, 375, 653
BsmAI	GTCTC	3 cut(s)	22, 1021, 1339
BsmI	GAATGC	2 cut(s)	461, 1336
BsnI	GGCC	3 cut(s)	510, 590, 684
Bso31I	GGTCTC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	16, 478, 919, 971
BspANI	GGCC	3 cut(s)	510, 590, 684
BspCNI	CTCAG	6 cut(s)	541, 972, 1105, 1162, 1216, 1249
BspLI	GGNNCC	1 cut(s)	683
BspMAI	CTGCAG	1 cut(s)	1252
BspMI	ACCTGC	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	996
BspPI	GGATC	3 cut(s)	486, 927, 979
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	213, 1208
BsrI	ACTGG	3 cut(s)	174, 369, 947
BssECI	CCNNGG	3 cut(s)	282, 966, 967
BssMI	GATC	4 cut(s)	16, 478, 919, 971
Bst2UI	CCWGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
Bst4CI	ACNGT	2 cut(s)	583, 806
BstC8I	GCNNGC	8 cut(s)	72, 508, 512, 588, 994, 1032, 1160, 1278
BstDEI	CTNAG	6 cut(s)	549, 980, 1092, 1170, 1224, 1257
BstF5I	GGATG	4 cut(s)	278, 316, 859, 1311
BstKTI	GATC	4 cut(s)	19, 481, 922, 974
BstMAI	GTCTC	3 cut(s)	22, 1021, 1339
BstMBI	GATC	4 cut(s)	16, 478, 919, 971
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 592, 1181, 1273, 1366
BstNI	CCWGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
BstSFI	CTRYAG	1 cut(s)	1248
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	478, 919
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	2 cut(s)	478, 919
BsuRI	GGCC	3 cut(s)	510, 590, 684
BtsCI	GGATG	4 cut(s)	278, 316, 859, 1311
BtsIMutI	CAGTG	2 cut(s)	773, 906
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	8 cut(s)	72, 508, 512, 588, 994, 1032, 1160, 1278
CaiI	CAGNNNCTG	1 cut(s)	1256
Cfr13I	GGNCC	3 cut(s)	635, 682, 770
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	4 cut(s)	223, 746, 950, 1070
CviAII	CATG	1 cut(s)	71
CviQI	GTAC	4 cut(s)	223, 746, 950, 1070
DdeI	CTNAG	6 cut(s)	549, 980, 1092, 1170, 1224, 1257
DpnI	GATC	4 cut(s)	18, 480, 921, 973
DpnII	GATC	4 cut(s)	16, 478, 919, 971
DraI	TTTAAA	3 cut(s)	177, 267, 328
DraIII	CACNNNGTG	2 cut(s)	218, 650
EaeI	YGGCCR	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	635, 770
Eco57I	CTGAAG	2 cut(s)	780, 1082
EcoRII	CCWGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
FaeI	CATG	1 cut(s)	74
FaiI	YATR	7 cut(s)	72, 95, 403, 722, 821, 1142, 1381
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	4 cut(s)	265, 323, 866, 1318
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	357, 993
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	4 cut(s)	66, 131, 852, 1003
HaeIII	GGCC	3 cut(s)	510, 590, 684
Hin1II	CATG	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	9 cut(s)	130, 398, 440, 500, 539, 845, 943, 1102, 1123
HphI	GGTGA	4 cut(s)	353, 446, 966, 1013
Hpy166II	GTNNAC	4 cut(s)	13, 108, 638, 773
Hpy188I	TCNGA	9 cut(s)	550, 571, 676, 910, 981, 1101, 1225, 1258, 1291
Hpy188III	TCNNGA	3 cut(s)	83, 482, 831
Hpy8I	GTNNAC	4 cut(s)	13, 108, 638, 773
Hpy99I	CGWCG	2 cut(s)	753, 960
HpyAV	CCTTC	1 cut(s)	1042
HpyCH4III	ACNGT	2 cut(s)	583, 806
HpyCH4IV	ACGT	3 cut(s)	255, 1068, 1118
HpyCH4V	TGCA	8 cut(s)	74, 161, 586, 880, 1076, 1162, 1250, 1360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 592, 1181, 1273, 1366
HpyF3I	CTNAG	6 cut(s)	549, 980, 1092, 1170, 1224, 1257
HpySE526I	ACGT	3 cut(s)	255, 1068, 1118
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	4 cut(s)	16, 478, 919, 971
LmnI	GCTCC	3 cut(s)	820, 1264, 1291
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	5 cut(s)	148, 287, 569, 768, 1085
MabI	ACCWGGT	1 cut(s)	646
MaeI	CTAG	2 cut(s)	357, 993
MaeII	ACGT	3 cut(s)	255, 1068, 1118
MaeIII	GTNAC	3 cut(s)	210, 901, 1200
MalI	GATC	4 cut(s)	18, 480, 921, 973
MboI	GATC	4 cut(s)	16, 478, 919, 971
MboII	GAAGA	4 cut(s)	326, 541, 819, 954
MfeI	CAATTG	1 cut(s)	1355
MflI	RGATCY	2 cut(s)	478, 919
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	9 cut(s)	44, 101, 323, 490, 723, 871, 913, 1144, 1355
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	952
Mox20I	TGGCCA	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	1052
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	6 cut(s)	50, 153, 176, 266, 327, 461
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	1169
MspR9I	CCNGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
MunI	CAATTG	1 cut(s)	1355
Mva1269I	GAATGC	2 cut(s)	461, 1336
MvaI	CCWGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
MwoI	GCNNNNNNNGC	5 cut(s)	170, 592, 1181, 1273, 1366
NdeII	GATC	4 cut(s)	16, 478, 919, 971
NheI	GCTAGC	1 cut(s)	992
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	683
NmuCI	GTSAC	2 cut(s)	210, 901
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	967
PctI	GAATGC	2 cut(s)	461, 1336
PdmI	GAANNNNTTC	1 cut(s)	1052
PfeI	GAWTC	8 cut(s)	130, 398, 440, 500, 539, 845, 1102, 1123
PflFI	GACNNNGTC	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	951
PpsI	GAGTC	1 cut(s)	951
Psp6I	CCWGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
PspGI	CCWGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
PspN4I	GGNNCC	1 cut(s)	683
PspPI	GGNCC	3 cut(s)	635, 682, 770
PstI	CTGCAG	1 cut(s)	1252
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	2 cut(s)	478, 919
PsyI	GACNNNGTC	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	4 cut(s)	224, 747, 951, 1071
RsaNI	GTAC	4 cut(s)	223, 746, 950, 1070
SaqAI	TTAA	6 cut(s)	50, 153, 176, 266, 327, 461
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	4 cut(s)	16, 478, 919, 971
Sau96I	GGNCC	3 cut(s)	635, 682, 770
SchI	GAGTC	1 cut(s)	952
ScrFI	CCNGG	6 cut(s)	244, 284, 648, 968, 1021, 1303
SexAI	ACCWGGT	1 cut(s)	646
SfaNI	GCATC	5 cut(s)	148, 287, 569, 768, 1085
SfcI	CTRYAG	1 cut(s)	1248
SinI	GGWCC	2 cut(s)	635, 770
SmlI	CTYRAG	2 cut(s)	273, 1315
SmoI	CTYRAG	2 cut(s)	273, 1315
SpeI	ACTAGT	1 cut(s)	356
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	9 cut(s)	44, 101, 323, 490, 723, 871, 913, 1144, 1355
SspMI	CTAG	2 cut(s)	357, 993
StyD4I	CCNGG	6 cut(s)	242, 282, 646, 966, 1019, 1301
TaaI	ACNGT	2 cut(s)	583, 806
TaiI	ACGT	3 cut(s)	258, 1071, 1121
TaqI	TCGA	2 cut(s)	790, 941
TasI	AATT	9 cut(s)	44, 101, 323, 490, 723, 871, 913, 1144, 1355
TfiI	GAWTC	8 cut(s)	130, 398, 440, 500, 539, 845, 1102, 1123
Tru1I	TTAA	6 cut(s)	50, 153, 176, 266, 327, 461
Tru9I	TTAA	6 cut(s)	50, 153, 176, 266, 327, 461
TscAI	CASTG	2 cut(s)	780, 906
TseFI	GTSAC	2 cut(s)	210, 901
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	210, 901
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	780, 906
Tth111I	GACNNNGTC	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	635, 770
XapI	RAATTY	3 cut(s)	323, 913, 1144
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	1052
XspI	CTAG	2 cut(s)	357, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.