Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Reverse (-)

46883201 .. 46888202

Gene Structure 5002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTTTTTTTGCTTACGTCTACCAAAGAATAAAGGTTCTCCTCATGACCATACAGAATGCCCCTCCTGGACTTGATTATGACCGCGATAAAAAGTTCTCCAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTCGTAAAAGATCAAACAAAGAGACCAACAGCAGAAAAATTGTTGAAACACTCCTTTTTCAAGACTGCAAAACCTCCGGAGCTTTCTCTTAAGAAATTGTTTACAGACCTGCCACCACTTTGGAATAGTGTTAAAGCCCTCCAGCTTAAAGATGCAGCACAATTGGCTTGGAAGAGAATGCCTTCAGCAGAGCAAGAGGCAATGTCACAGAGTGAGTACCAGCGAGGTGTTAGCGCGTGGAACTTTAACGTTGAGGATTTAAAGGCTCAAGCATCCATGGTGCGAGATGATGATGATGAAGATTTTTCGGAAATGATTGACACAGACGGAAAATTGAAATCCGTTTTTAGTTATAAGGTTGCAACTGATAGGAAATCCAGTTTAGGGAAGTCGAATGAAAATAATGAACCACCTTGGACTGATTGCAAAAGTGAAGTAAATGGTGATGACTCACAACAGGTTGAATGCGTGAACAGAAAGGACAAGCATCATGAAAGTGAAACATTGGAATCTGGTGGTCAACAAGGGACAGACTGGAAGAAAAATGGATCAAGCTCTAAAGCAACAGCGTCTACATCGGAAACAGACATGGTACAGGCCAAGTCTAGAATTGTAGCAGTGAAAAGTCGTCAAACGCGGAGTGGGCCGCTCACGCCTGGTGGTGTGCTTAATCATTCTTTATCGGAGACGGGACGCAATTTTGAAAGGAATGAGAATGAAAACCAACAAGCTATCGAGAAAGCTAAATGTGAAATATTTGGGTATTCTCCTCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

34.11

Weight (kDa)

7.61

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	781
AccI	GTMKAC	2 cut(s)	21, 704
AccII	CGCG	3 cut(s)	87, 368, 769
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	3 cut(s)	85, 769, 779
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	350, 726
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	178, 193, 469, 596, 836
AjnI	CCWGG	2 cut(s)	67, 787
AluBI	AGCT	5 cut(s)	214, 277, 687, 863, 875
AluI	AGCT	5 cut(s)	214, 277, 687, 863, 875
Alw26I	GTCTC	2 cut(s)	148, 812
AlwI	GGATC	1 cut(s)	688
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	729, 776
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	299
BciT130I	CCWGG	2 cut(s)	69, 789
BcoDI	GTCTC	2 cut(s)	148, 812
BfaI	CTAG	2 cut(s)	738, 910
BfrI	CTTAAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	288, 779
BlsI	GCNGC	2 cut(s)	289, 780
Bme1390I	CCNGG	2 cut(s)	69, 789
BmgT120I	GGNCC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	69, 789
BmsI	GCATC	3 cut(s)	274, 413, 628
BpmI	CTGGAG	2 cut(s)	257, 888
BpuEI	CTTGAG	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	408, 545
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse1I	ACTGG	3 cut(s)	510, 671, 905
Bse3DI	GCAATG	2 cut(s)	132, 339
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	69, 789
BseDI	CCNNGG	2 cut(s)	408, 545
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	2 cut(s)	132, 339
BseNI	ACTGG	3 cut(s)	510, 671, 905
BseRI	GAGGAG	2 cut(s)	32, 891
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	3 cut(s)	87, 368, 769
BshFI	GGCC	2 cut(s)	731, 778
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	673, 837
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	148, 812
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	2 cut(s)	673, 837
BsmI	GAATGC	3 cut(s)	64, 315, 602
BsnI	GGCC	2 cut(s)	731, 778
Bso31I	GGTCTC	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	142, 680
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	3 cut(s)	85, 769, 779
BspANI	GGCC	2 cut(s)	731, 778
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	3 cut(s)	87, 368, 769
BspHI	TCATGA	2 cut(s)	45, 622
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	781
BsrDI	GCAATG	2 cut(s)	132, 339
BsrI	ACTGG	3 cut(s)	510, 671, 905
BssECI	CCNNGG	2 cut(s)	408, 545
BssMI	GATC	2 cut(s)	142, 680
BssT1I	CCWWGG	2 cut(s)	408, 545
Bst2UI	CCWGG	2 cut(s)	69, 789
Bst6I	CTCTTC	1 cut(s)	299
BstAFI	CTTAAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	404
BstFNI	CGCG	3 cut(s)	87, 368, 769
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	145, 683
BstMAI	GTCTC	2 cut(s)	148, 812
BstMBI	GATC	2 cut(s)	142, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 775, 784
BstNI	CCWGG	2 cut(s)	69, 789
BstSCI	CCNGG	2 cut(s)	67, 787
BstUI	CGCG	3 cut(s)	87, 368, 769
BstV1I	GCAGC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	731, 778
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	756
BveI	ACCTGC	1 cut(s)	249
CciI	TCATGA	2 cut(s)	45, 622
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	776
CseI	GACGC	2 cut(s)	690, 834
Csp6I	GTAC	2 cut(s)	349, 725
CviAII	CATG	4 cut(s)	46, 409, 623, 721
CviQI	GTAC	2 cut(s)	349, 725
DpnI	GATC	2 cut(s)	144, 682
DpnII	GATC	2 cut(s)	142, 680
DraI	TTTAAA	2 cut(s)	112, 393
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	408, 545
Eco31I	GGTCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	67, 787
EcoT14I	CCWWGG	2 cut(s)	408, 545
ErhI	CCWWGG	2 cut(s)	408, 545
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	4 cut(s)	49, 412, 626, 724
FaiI	YATR	7 cut(s)	47, 53, 81, 410, 486, 624, 722
FaqI	GGGAC	2 cut(s)	673, 837
FatI	CATG	4 cut(s)	45, 408, 622, 720
FblI	GTMKAC	2 cut(s)	21, 704
Fnu4HI	GCNGC	2 cut(s)	288, 779
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	288, 779
FspBI	CTAG	2 cut(s)	738, 910
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	288, 779
GsuI	CTGGAG	2 cut(s)	257, 888
HaeIII	GGCC	2 cut(s)	731, 778
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	690, 834
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	49, 412, 626, 724
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	653
HindII	GTYRAC	1 cut(s)	653
HinfI	GANTC	2 cut(s)	581, 641
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	5 cut(s)	22, 234, 604, 653, 705
Hpy188I	TCNGA	3 cut(s)	442, 712, 817
Hpy188III	TCNNGA	6 cut(s)	46, 193, 209, 623, 738, 868
Hpy8I	GTNNAC	5 cut(s)	22, 234, 604, 653, 705
HpyAV	CCTTC	1 cut(s)	324
HpyCH4IV	ACGT	2 cut(s)	18, 381
HpyCH4V	TGCA	5 cut(s)	125, 200, 287, 494, 558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 775, 784
HpySE526I	ACGT	2 cut(s)	18, 381
Hsp92II	CATG	4 cut(s)	49, 412, 626, 724
HspAI	GCGC	1 cut(s)	366
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	142, 680
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	3 cut(s)	274, 413, 628
MaeI	CTAG	2 cut(s)	738, 910
MaeII	ACGT	2 cut(s)	18, 381
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	2 cut(s)	144, 682
MbiI	CCGCTC	1 cut(s)	781
MboI	GATC	2 cut(s)	142, 680
MboII	GAAGA	3 cut(s)	316, 443, 682
MfeI	CAATTG	1 cut(s)	293
MluCI	AATT	6 cut(s)	170, 227, 293, 464, 741, 829
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	9 cut(s)	53, 75, 143, 216, 281, 322, 350, 379, 912
MroI	TCCGGA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	313
MseI	TTAA	7 cut(s)	111, 222, 264, 279, 378, 392, 801
MslI	CAYNNNNRTG	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	69, 789
MunI	CAATTG	1 cut(s)	293
Mva1269I	GAATGC	3 cut(s)	64, 315, 602
MvaI	CCWGG	2 cut(s)	69, 789
MvnI	CGCG	3 cut(s)	87, 368, 769
MwoI	GCNNNNNNNGC	3 cut(s)	296, 775, 784
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	142, 680
NlaIII	CATG	4 cut(s)	49, 412, 626, 724
NmuCI	GTSAC	1 cut(s)	336
PagI	TCATGA	2 cut(s)	45, 622
PctI	GAATGC	3 cut(s)	64, 315, 602
PdmI	GAANNNNTTC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	641
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	289, 780
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	67, 787
PspGI	CCWGG	2 cut(s)	67, 787
PspPI	GGNCC	1 cut(s)	776
RsaI	GTAC	2 cut(s)	350, 726
RsaNI	GTAC	2 cut(s)	349, 725
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	7 cut(s)	111, 222, 264, 279, 378, 392, 801
SatI	GCNGC	2 cut(s)	288, 779
Sau3AI	GATC	2 cut(s)	142, 680
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	69, 789
SfaNI	GCATC	3 cut(s)	274, 413, 628
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	221, 399
SmoI	CTYRAG	2 cut(s)	221, 399
Sse9I	AATT	6 cut(s)	170, 227, 293, 464, 741, 829
SsiI	CCGC	3 cut(s)	85, 769, 779
SspI	AATATT	1 cut(s)	888
SspMI	CTAG	2 cut(s)	738, 910
StyD4I	CCNGG	2 cut(s)	67, 787
StyI	CCWWGG	2 cut(s)	408, 545
TaiI	ACGT	2 cut(s)	21, 384
TaqI	TCGA	2 cut(s)	524, 867
TasI	AATT	6 cut(s)	170, 227, 293, 464, 741, 829
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	7 cut(s)	111, 222, 264, 279, 378, 392, 801
Tru9I	TTAA	7 cut(s)	111, 222, 264, 279, 378, 392, 801
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	5 cut(s)	444, 543, 552, 639, 864
TspGWI	ACGGA	2 cut(s)	463, 474
TspRI	CASTG	1 cut(s)	756
Vha464I	CTTAAG	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	737
XmiI	GTMKAC	2 cut(s)	21, 704
XmnI	GAANNNNTTC	1 cut(s)	313
XspI	CTAG	2 cut(s)	738, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.