Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Forward (+)

59913255 .. 59916864

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0477200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGGTCCGTACCGATCGTCATCGCCGATCATGGGGATCCTCTTCCTCGCCATGTTCGCCTTGTCCTCCGCCGCCGACATGTCGATCATCGCCTACGACAACAGCCACGCCTCCTCTGCCGGCTGGAGGACCGACAAGGAGGTGATGTCACTGTACGAGGGGTGGTTGGCCAAGCACGGCAAGTCCTACAACGGCTTGGGAGAGAAGGAGAAGCGCTTCCAGATCTTCAAGGACAACCTCAGGTTCATCGACGACCACAACGCTCTCAACCTCAACTACAAGCTCGGTCTGACTAAGTTCGCCGATCTGTCCAACGAGGAGTACCGGTCAACGTACCTAGGGACCAAGCCCCGCGCTCTGAATAGGCTCTCCAAGACAAAGAGCGACCGGTACGCGCCACGTGTCGGCGATCAGTTGCCTGACGCTGTTGATTGGAGGAAGGAAGGCGTCGTCAACCCTGTCAAAGACCAAGGCCAGTGTGGGAGTTGCTGGGCATTCTCAACAATCTCTGCTGTGGAAGGAATCAATAAGATAGTGACTGGCGATCTTATCTCACTATCTGAGCAGGAGTTGGTTGATTGTGATAAAACTTATAATGAAGGATGCAATGGAGGGCTCATGGACTATGCCTTCGAGTTCATCATTAACAATGGTGGCATTGACAGTGAAGATGACTATCCTTACAAAGGATATGATTCCACATGTGACACCTACAGGAAAAATGCCAAGGTGGTTTCAATTGATTCTTATGAAGATGTTCCCACATACGATGAGCAAGCGTTGCAAAAGGCTGTTGCCAATCAGCCAATTGCTGTTGCTATTGAAGGAGGAGGCAGGGAATTCCAGTTATATTCATCAGGTGTGTTTACTGGACGGTGTGGGACAGCACTAGACCATGGTGTTACTGTTGTTGGATACGGCACAGACCATGGCGTTGATTACTGGATTGTGAGGAATTCATGGGGTGCCAGCTGGGGAGAGGCAGGGTACATCAGAATGGAGCGTAATCTGGGTAACACCGCAACCGGGAAATGTGGAATTGCAATGGAGGCTTCTTACCCCGTCAAGGTAGGACAGAATCCCCCTAACCCTGGTCCATCTCCTCCATCTCCGATAAAACCTCCTCAGGTTTGTGACAACTACTTCTCCTGCCCCGAGAGCAACACCTGCTGCTGTATCTATCAGTATGCAAACTACTGCTTTGCTTGGGGATGCTGTCCTCTTGAAGGTGCCACCTGCTGTGATGACCATTATAGTTGCTGCCCATCAGACTACCCCGTCTGCAATGTCAATGCAGGAACCTGTCAGCTGAGCAAGGGCAATCCAATGAGTGTGAAGGCATTGAAGCGCACACCAGCTAAAGCTCACTGGACTTTGGGAGGTGGTGCCAAGCACAGCAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

468

Amino Acids

51.17

Weight (kDa)

5.48

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	52 - 108	3.1e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	139 - 355	1.9e-85	Papain family cysteine protease
Granulin	PF00396	389 - 436	1.3e-07	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AarI	CACCTGC	2 cut(s)	1175, 1244
AasI	GACNNNNNNGTC	1 cut(s)	1277
Acc36I	ACCTGC	2 cut(s)	1175, 1244
AccB1I	GGYRCC	3 cut(s)	965, 1229, 1385
AccII	CGCG	2 cut(s)	354, 395
AciI	CCGC	4 cut(s)	69, 72, 352, 1020
AclWI	GGATC	2 cut(s)	31, 44
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	839, 955
AcvI	CACGTG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	6 cut(s)	11, 155, 323, 335, 392, 989
AfeI	AGCGCT	1 cut(s)	215
AfiI	CCNNNNNNNGG	8 cut(s)	32, 126, 404, 686, 1026, 1066, 1091, 1226
AflIII	ACRYGT	3 cut(s)	78, 400, 701
AgeI	ACCGGT	2 cut(s)	324, 387
AgsI	TTSAA	5 cut(s)	229, 738, 824, 1226, 1345
AjnI	CCWGG	1 cut(s)	1090
AluBI	AGCT	5 cut(s)	283, 972, 1309, 1358, 1364
AluI	AGCT	5 cut(s)	283, 972, 1309, 1358, 1364
AlwI	GGATC	2 cut(s)	31, 44
Ama87I	CYCGRG	1 cut(s)	1154
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	2 cut(s)	168, 472
ApeKI	GCWGC	2 cut(s)	1170, 1260
ApoI	RAATTY	2 cut(s)	839, 955
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AsiGI	ACCGGT	2 cut(s)	324, 387
Asp700I	GAANNNNTTC	2 cut(s)	215, 756
AspA2I	CCTAGG	1 cut(s)	337
AspLEI	GCGC	4 cut(s)	216, 356, 397, 1350
AspS9I	GGNCC	4 cut(s)	5, 129, 342, 1094
AsuC2I	CCSGG	1 cut(s)	1027
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	1154
AvaII	GGWCC	4 cut(s)	5, 129, 342, 1094
AvrII	CCTAGG	1 cut(s)	337
AxyI	CCTNAGG	2 cut(s)	239, 1125
BalI	TGGCCA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	3 cut(s)	965, 1229, 1385
BanII	GRGCYC	1 cut(s)	618
BbrPI	CACGTG	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	1157, 1247
BccI	CCATC	3 cut(s)	1105, 1114, 1273
BceAI	ACGGC	3 cut(s)	193, 208, 934
BciT130I	CCWGG	1 cut(s)	1092
BciVI	GTATCC	1 cut(s)	908
BcnI	CCSGG	1 cut(s)	1027
BfaI	CTAG	2 cut(s)	338, 890
BfmI	CTRYAG	1 cut(s)	712
BfoI	RGCGCY	1 cut(s)	217
BfuAI	ACCTGC	2 cut(s)	1175, 1244
BfuI	GTATCC	1 cut(s)	908
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	3 cut(s)	72, 1171, 1261
BlnI	CCTAGG	1 cut(s)	337
BlpI	GCTNAGC	1 cut(s)	1310
BlsI	GCNGC	3 cut(s)	73, 1172, 1262
Bme1390I	CCNGG	2 cut(s)	1027, 1092
Bme18I	GGWCC	4 cut(s)	5, 129, 342, 1094
BmeT110I	CYCGRG	1 cut(s)	1154
BmgT120I	GGNCC	4 cut(s)	5, 129, 342, 1094
BmiI	GGNNCC	7 cut(s)	6, 38, 343, 967, 1231, 1300, 1387
BmrFI	CCNGG	2 cut(s)	1027, 1092
BmsI	GCATC	2 cut(s)	593, 1202
BpmI	CTGGAG	1 cut(s)	145
Bpu1102I	GCTNAGC	1 cut(s)	1310
BpuMI	CCSGG	1 cut(s)	1027
BsaAI	YACGTR	1 cut(s)	401
BsaBI	GATNNNNATC	2 cut(s)	19, 675
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	6 cut(s)	337, 469, 726, 895, 928, 1090
BsaWI	WCCGGW	2 cut(s)	324, 387
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 311, 341, 1130, 1160
Bsc4I	CCNNNNNNNGG	8 cut(s)	32, 126, 404, 686, 1026, 1066, 1091, 1226
Bse118I	RCCGGY	3 cut(s)	119, 324, 387
Bse1I	ACTGG	6 cut(s)	475, 544, 844, 874, 947, 1373
Bse21I	CCTNAGG	2 cut(s)	239, 1125
Bse3DI	GCAATG	3 cut(s)	613, 1050, 1291
Bse8I	GATNNNNATC	2 cut(s)	19, 675
BseBI	CCWGG	1 cut(s)	1092
BseDI	CCNNGG	6 cut(s)	337, 469, 726, 895, 928, 1090
BseGI	GGATG	2 cut(s)	608, 1217
BseJI	GATNNNNATC	2 cut(s)	19, 675
BseLI	CCNNNNNNNGG	8 cut(s)	32, 126, 404, 686, 1026, 1066, 1091, 1226
BseMI	GCAATG	3 cut(s)	613, 1050, 1291
BseMII	CTCAG	4 cut(s)	253, 552, 1139, 1301
BseNI	ACTGG	6 cut(s)	475, 544, 844, 874, 947, 1373
BseRI	GAGGAG	5 cut(s)	103, 332, 843, 1092, 1113
BseXI	GCAGC	2 cut(s)	1157, 1247
BseYI	CCCAGC	2 cut(s)	489, 972
Bsh1236I	CGCG	2 cut(s)	354, 395
Bsh1285I	CGRYCG	2 cut(s)	17, 388
BshFI	GGCC	2 cut(s)	170, 474
BshNI	GGYRCC	3 cut(s)	965, 1229, 1385
BshTI	ACCGGT	2 cut(s)	324, 387
BsiEI	CGRYCG	2 cut(s)	17, 388
BsiHKCI	CYCGRG	1 cut(s)	1154
BsiSI	CCGG	4 cut(s)	120, 325, 388, 1026
BslFI	GGGAC	2 cut(s)	355, 895
BslI	CCNNNNNNNGG	8 cut(s)	32, 126, 404, 686, 1026, 1066, 1091, 1226
BsmFI	GGGAC	2 cut(s)	355, 895
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	170, 474
BsoBI	CYCGRG	1 cut(s)	1154
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
Bsp1720I	GCTNAGC	1 cut(s)	1310
Bsp19I	CCATGG	2 cut(s)	895, 928
BspACI	CCGC	4 cut(s)	69, 72, 352, 1020
BspANI	GGCC	2 cut(s)	170, 474
BspCNI	CTCAG	4 cut(s)	252, 553, 1138, 1302
BspFNI	CGCG	2 cut(s)	354, 395
BspLI	GGNNCC	7 cut(s)	6, 38, 343, 967, 1231, 1300, 1387
BspMI	ACCTGC	2 cut(s)	1175, 1244
BspPI	GGATC	2 cut(s)	31, 44
BspT107I	GGYRCC	3 cut(s)	965, 1229, 1385
BsrDI	GCAATG	3 cut(s)	613, 1050, 1291
BsrFI	RCCGGY	3 cut(s)	119, 324, 387
BsrI	ACTGG	6 cut(s)	475, 544, 844, 874, 947, 1373
BssAI	RCCGGY	3 cut(s)	119, 324, 387
BssECI	CCNNGG	6 cut(s)	337, 469, 726, 895, 928, 1090
BssMI	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	5 cut(s)	337, 469, 726, 895, 928
Bst2UI	CCWGG	1 cut(s)	1092
Bst4CI	ACNGT	4 cut(s)	153, 665, 876, 907
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	2 cut(s)	781, 1167
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	121, 777, 970
BstDEI	CTNAG	5 cut(s)	239, 294, 561, 1125, 1310
BstDSI	CCRYGG	2 cut(s)	895, 928
BstENI	CCTNNNNNAGG	2 cut(s)	684, 1224
BstF5I	GGATG	2 cut(s)	608, 1217
BstFNI	CGCG	2 cut(s)	354, 395
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	4 cut(s)	216, 356, 397, 1350
BstKTI	GATC	8 cut(s)	17, 30, 39, 87, 225, 307, 412, 547
BstMBI	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
BstMCI	CGRYCG	2 cut(s)	17, 388
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 116, 781, 1049, 1158, 1167
BstNI	CCWGG	1 cut(s)	1092
BstNSI	RCATGY	2 cut(s)	82, 705
BstSCI	CCNGG	2 cut(s)	1025, 1090
BstSFI	CTRYAG	1 cut(s)	712
BstUI	CGCG	2 cut(s)	354, 395
BstV1I	GCAGC	2 cut(s)	1157, 1247
BstX2I	RGATCY	2 cut(s)	36, 222
BstYI	RGATCY	2 cut(s)	36, 222
Bsu36I	CCTNAGG	2 cut(s)	239, 1125
BsuI	GTATCC	1 cut(s)	908
BsuRI	GGCC	2 cut(s)	170, 474
BtgI	CCRYGG	2 cut(s)	895, 928
BtgZI	GCGATG	2 cut(s)	6, 73
BtsCI	GGATG	2 cut(s)	608, 1217
BtsIMutI	CAGTG	4 cut(s)	149, 482, 670, 1366
BveI	ACCTGC	2 cut(s)	1175, 1244
Cac8I	GCNNGC	3 cut(s)	121, 777, 970
CfoI	GCGC	4 cut(s)	216, 356, 397, 1350
Cfr10I	RCCGGY	3 cut(s)	119, 324, 387
Cfr13I	GGNCC	4 cut(s)	5, 129, 342, 1094
CseI	GACGC	2 cut(s)	431, 436
Csp6I	GTAC	6 cut(s)	10, 154, 322, 334, 391, 988
CspAI	ACCGGT	2 cut(s)	324, 387
CviAII	CATG	8 cut(s)	31, 52, 79, 619, 702, 896, 929, 960
CviQI	GTAC	6 cut(s)	10, 154, 322, 334, 391, 988
DdeI	CTNAG	5 cut(s)	239, 294, 561, 1125, 1310
DpnI	GATC	8 cut(s)	16, 29, 38, 86, 224, 306, 411, 546
DpnII	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
DrdI	GACNNNNNNGTC	1 cut(s)	1277
DseDI	GACNNNNNNGTC	1 cut(s)	1277
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	5 cut(s)	337, 469, 726, 895, 928
Eco24I	GRGCYC	1 cut(s)	618
Eco47I	GGWCC	4 cut(s)	5, 129, 342, 1094
Eco47III	AGCGCT	1 cut(s)	215
Eco72I	CACGTG	1 cut(s)	401
Eco81I	CCTNAGG	2 cut(s)	239, 1125
Eco88I	CYCGRG	1 cut(s)	1154
EcoNI	CCTNNNNNAGG	2 cut(s)	684, 1224
EcoRI	GAATTC	2 cut(s)	839, 955
EcoRII	CCWGG	1 cut(s)	1090
EcoT14I	CCWWGG	5 cut(s)	337, 469, 726, 895, 928
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	5 cut(s)	337, 469, 726, 895, 928
FaeI	CATG	8 cut(s)	34, 55, 82, 622, 705, 899, 932, 963
FaqI	GGGAC	2 cut(s)	355, 895
FatI	CATG	8 cut(s)	30, 51, 78, 618, 701, 895, 928, 959
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	3 cut(s)	72, 1171, 1261
FokI	GGATG	2 cut(s)	615, 1224
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	3 cut(s)	72, 1171, 1261
FspBI	CTAG	2 cut(s)	338, 890
GlaI	GCGC	4 cut(s)	215, 355, 396, 1349
GluI	GCNGC	3 cut(s)	72, 1171, 1261
GsaI	CCCAGC	2 cut(s)	493, 976
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	170, 474
HapII	CCGG	4 cut(s)	120, 325, 388, 1026
HgaI	GACGC	2 cut(s)	431, 436
HhaI	GCGC	4 cut(s)	216, 356, 397, 1350
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	8 cut(s)	34, 55, 82, 622, 705, 899, 932, 963
Hin6I	GCGC	4 cut(s)	214, 354, 395, 1348
HinP1I	GCGC	4 cut(s)	214, 354, 395, 1348
HincII	GTYRAC	2 cut(s)	330, 454
HindII	GTYRAC	2 cut(s)	330, 454
HinfI	GANTC	4 cut(s)	522, 695, 743, 1078
HpaII	CCGG	4 cut(s)	120, 325, 388, 1026
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	330, 454, 867
Hpy188I	TCNGA	6 cut(s)	291, 360, 562, 995, 1113, 1270
Hpy188III	TCNNGA	2 cut(s)	220, 1223
Hpy8I	GTNNAC	3 cut(s)	330, 454, 867
Hpy99I	CGWCG	2 cut(s)	254, 452
HpyAV	CCTTC	9 cut(s)	199, 433, 437, 512, 593, 640, 818, 1220, 1330
HpyCH4III	ACNGT	4 cut(s)	153, 665, 876, 907
HpyCH4IV	ACGT	2 cut(s)	332, 400
HpyCH4V	TGCA	6 cut(s)	606, 784, 1043, 1190, 1284, 1295
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 116, 781, 1049, 1158, 1167
HpyF3I	CTNAG	5 cut(s)	239, 294, 561, 1125, 1310
HpySE526I	ACGT	2 cut(s)	332, 400
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	8 cut(s)	34, 55, 82, 622, 705, 899, 932, 963
HspAI	GCGC	4 cut(s)	214, 354, 395, 1348
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	2 cut(s)	1157, 1247
LweI	GCATC	2 cut(s)	593, 1202
MaeI	CTAG	2 cut(s)	338, 890
MaeII	ACGT	2 cut(s)	332, 400
MaeIII	GTNAC	6 cut(s)	147, 535, 704, 901, 1013, 1133
MalI	GATC	8 cut(s)	16, 29, 38, 86, 224, 306, 411, 546
MboI	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
MboII	GAAGA	4 cut(s)	34, 217, 680, 764
MfeI	CAATTG	2 cut(s)	738, 807
MflI	RGATCY	2 cut(s)	36, 222
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	5 cut(s)	738, 807, 839, 955, 1038
MluNI	TGGCCA	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	336, 892
Mox20I	TGGCCA	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	215, 756
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	645, 1405
MslI	CAYNNNNRTG	1 cut(s)	995
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	972, 1309
MspI	CCGG	4 cut(s)	120, 325, 388, 1026
MspR9I	CCNGG	2 cut(s)	1027, 1092
MunI	CAATTG	2 cut(s)	738, 807
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	1092
MvnI	CGCG	2 cut(s)	354, 395
MwoI	GCNNNNNNNGC	6 cut(s)	56, 116, 781, 1049, 1158, 1167
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	1027
NcoI	CCATGG	2 cut(s)	895, 928
NdeII	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	8 cut(s)	34, 55, 82, 622, 705, 899, 932, 963
NlaIV	GGNNCC	7 cut(s)	6, 38, 343, 967, 1231, 1300, 1387
NmuCI	GTSAC	4 cut(s)	147, 535, 704, 1133
NspI	RCATGY	2 cut(s)	82, 705
PaqCI	CACCTGC	2 cut(s)	1175, 1244
PciI	ACATGT	2 cut(s)	78, 701
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	494
PdiI	GCCGGC	1 cut(s)	121
PdmI	GAANNNNTTC	2 cut(s)	215, 756
PfeI	GAWTC	4 cut(s)	522, 695, 743, 1078
PinAI	ACCGGT	2 cut(s)	324, 387
PkrI	GCNGC	3 cut(s)	73, 1172, 1262
Ple19I	CGATCG	1 cut(s)	17
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	401
PscI	ACATGT	2 cut(s)	78, 701
PsiI	TTATAA	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	1090
PspCI	CACGTG	1 cut(s)	401
PspFI	CCCAGC	2 cut(s)	489, 972
PspGI	CCWGG	1 cut(s)	1090
PspN4I	GGNNCC	7 cut(s)	6, 38, 343, 967, 1231, 1300, 1387
PspPI	GGNCC	4 cut(s)	5, 129, 342, 1094
PsuI	RGATCY	2 cut(s)	36, 222
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	972, 1309
RsaI	GTAC	6 cut(s)	11, 155, 323, 335, 392, 989
RsaNI	GTAC	6 cut(s)	10, 154, 322, 334, 391, 988
RseI	CAYNNNNRTG	1 cut(s)	995
SaqAI	TTAA	2 cut(s)	645, 1405
SatI	GCNGC	3 cut(s)	72, 1171, 1261
Sau3AI	GATC	8 cut(s)	14, 27, 36, 84, 222, 304, 409, 544
Sau96I	GGNCC	4 cut(s)	5, 129, 342, 1094
ScrFI	CCNGG	2 cut(s)	1027, 1092
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	2 cut(s)	593, 1202
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	4 cut(s)	5, 129, 342, 1094
SmiMI	CAYNNNNRTG	1 cut(s)	995
Sse9I	AATT	5 cut(s)	738, 807, 839, 955, 1038
SsiI	CCGC	4 cut(s)	69, 72, 352, 1020
SspMI	CTAG	2 cut(s)	338, 890
StyD4I	CCNGG	2 cut(s)	1025, 1090
StyI	CCWWGG	5 cut(s)	337, 469, 726, 895, 928
TaaI	ACNGT	4 cut(s)	153, 665, 876, 907
TaiI	ACGT	2 cut(s)	335, 403
TaqI	TCGA	3 cut(s)	83, 249, 633
TaqII	GACCGA	2 cut(s)	146, 275
TasI	AATT	5 cut(s)	738, 807, 839, 955, 1038
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	4 cut(s)	522, 695, 743, 1078
Tru1I	TTAA	2 cut(s)	645, 1405
Tru9I	TTAA	2 cut(s)	645, 1405
TscAI	CASTG	4 cut(s)	156, 482, 670, 1373
TseFI	GTSAC	4 cut(s)	147, 535, 704, 1133
TseI	GCWGC	2 cut(s)	1170, 1260
Tsp45I	GTSAC	4 cut(s)	147, 535, 704, 1133
TspDTI	ATGAA	6 cut(s)	235, 612, 628, 765, 843, 948
TspRI	CASTG	4 cut(s)	156, 482, 670, 1373
VpaK11BI	GGWCC	4 cut(s)	5, 129, 342, 1094
XagI	CCTNNNNNAGG	2 cut(s)	684, 1224
XapI	RAATTY	2 cut(s)	839, 955
XceI	RCATGY	2 cut(s)	82, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmaJI	CCTAGG	1 cut(s)	337
XmnI	GAANNNNTTC	2 cut(s)	215, 756
XspI	CTAG	2 cut(s)	338, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.