Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Reverse (-)

59917737 .. 59918455

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAAAGCCTTTGATTGATTTCTTTGGGGCTATTGATAATGGGGTGGATGGCCTTAATGAGTCTGTGGCTACTTTCATTAATCATGGTTCCTGGGAGCTGCCACACTTACTTCAATTTCACTATCCTGCTTTGTGTGAGTTGATTAGTAAGGTGCCCATTGCTACTGACCCTACACTTGATGATTCATTGATATGGTCACCATCTTCTTCGGGTGAGCTTACTGCTAAATTAGCTTTTCATTTTTTACGCCCCCCTCTTCCTTCAATGGATTGGGGTAAATGCATTTGGTCGAAGTACATTACGCCTCGTATATCATTGTTGACATGGAAGGTGTTAAGGGGTAGGGTGCTTACTGATGATTTTTTGCTCGTTGGCTGGAGTCTCTTTGGCTTCTCGTTGTGGTCTTTGATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

5.7

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	76 - 123	4.6e-07	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	116, 267
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	100, 220, 236
AluI	AGCT	3 cut(s)	100, 220, 236
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	100
AseI	ATTAAT	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	192, 227
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	44, 211
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	91, 156
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	91, 156
BspT107I	GGYRCC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	94
BstPI	GGTNACC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	86, 327
CviJI	RGCY	9 cut(s)	10, 32, 54, 71, 100, 220, 236, 378, 393
CviKI_1	RGCY	9 cut(s)	10, 32, 54, 71, 100, 220, 236, 378, 393
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	287
FaeI	CATG	2 cut(s)	89, 330
FaiI	YATR	4 cut(s)	87, 196, 314, 328
FatI	CATG	2 cut(s)	85, 326
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	89, 330
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	3 cut(s)	62, 185, 382
HphI	GGTGA	2 cut(s)	192, 227
Hpy166II	GTNNAC	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	2 cut(s)	273, 325
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	89, 330
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	79, 106, 141, 364
Lsp1109I	GCAGC	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	3 cut(s)	198, 201, 251
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	116, 230
MlyI	GAGTC	2 cut(s)	71, 391
MnlI	CCTC	2 cut(s)	267, 318
Mph1103I	ATGCAT	1 cut(s)	287
MseI	TTAA	4 cut(s)	57, 81, 338, 418
MslI	CAYNNNNRTG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	2 cut(s)	89, 330
NlaIV	GGNNCC	2 cut(s)	91, 156
NmuCI	GTSAC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	70, 390
PpsI	GAGTC	2 cut(s)	70, 390
PshBI	ATTAAT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	92
PspEI	GGTNACC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	91, 156
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	4 cut(s)	57, 81, 338, 418
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	71, 391
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	102, 156, 222, 238, 336
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	116, 230
StyD4I	CCNGG	1 cut(s)	92
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	116, 230
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	4 cut(s)	57, 81, 338, 418
Tru9I	TTAA	4 cut(s)	57, 81, 338, 418
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	67, 177, 230
VspI	ATTAAT	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.