Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022028.1

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Reverse (-)

146 .. 543

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022028.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggtacaggccaagtatagaattgtagcagtgaaaagtcgtcaaacgcggagtgggccgctcacgcctggtggtgtgcttaatcattctttatcggagacgggacgcagttttgaaaggaatgagaatgaaaaccaacaagctatcgagaaagctaaatgtgaagtaagacgaactccaagctttagtggtccactgatgctcccaaaccgagcttcagcaaatagtttatcagctcctataaaatcttcaggaggtaatgaagatgctcattatgctttaaagatcattgcaactacttatgtacttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

11.31

Weight (kDa)

9.91

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	49, 59
AcuI	CTGAAG	2 cut(s)	201, 234
AfaI	GTAC	2 cut(s)	6, 306
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	5 cut(s)	143, 155, 183, 215, 236
AluI	AGCT	5 cut(s)	143, 155, 183, 215, 236
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	9, 56
AspS9I	GGNCC	2 cut(s)	56, 191
AvaII	GGWCC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	56, 191
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	189, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	11, 58
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	11, 58
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	49, 59
BspANI	GGCC	2 cut(s)	11, 58
BspFNI	CGCG	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	288
BssMI	GATC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 275
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	11, 58
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 194
Cfr13I	GGNCC	2 cut(s)	56, 191
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	5, 305
CviJI	RGCY	7 cut(s)	11, 58, 143, 155, 183, 215, 236
CviKI_1	RGCY	7 cut(s)	11, 58, 143, 155, 183, 215, 236
CviQI	GTAC	2 cut(s)	5, 305
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
DraI	TTTAAA	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	201, 234
EcoRII	CCWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	92
FaiI	YATR	5 cut(s)	18, 242, 276, 303, 313
FaqI	GGGAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	11, 58
HgaI	GACGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	148, 252
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 275
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	207, 241
LpnPI	CCDG	3 cut(s)	54, 81, 237
LweI	GCATC	2 cut(s)	189, 256
MalI	GATC	1 cut(s)	287
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	240, 275
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	81, 281
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 275
NdeII	GATC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	56, 191
RsaI	GTAC	2 cut(s)	6, 306
RsaNI	GTAC	2 cut(s)	5, 305
SaqAI	TTAA	2 cut(s)	81, 281
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	56, 191
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	6 cut(s)	145, 157, 185, 217, 238, 259
SfaNI	GCATC	2 cut(s)	189, 256
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	2 cut(s)	49, 59
StyD4I	CCNGG	1 cut(s)	67
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	81, 281
Tru9I	TTAA	2 cut(s)	81, 281
TscAI	CASTG	2 cut(s)	36, 201
TspDTI	ATGAA	2 cut(s)	144, 276
TspRI	CASTG	2 cut(s)	36, 201
VpaK11BI	GGWCC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.