Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003602

Physical Location & Seq

Genomic Coordinates Forward (+)

47095216 .. 47108609

Gene Structure 13394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACCATACAGAATGCCCCTCCTGGACTTGATTATGACCGCGATAAAAAGTTCTCCAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTCGTAAAAGATCAAACAAAGAGACCAATAGCAGAAAAATTGTTGAAACACTCCTTTTTCAAGACTGCAAAACCTCCGGAGCTTTCTCTTAAGAAATTGTTTACAGACCTGCCACCACTTTGGAATCGTGTTAAAGCCCTCCAGCTTAAAGATGCAGCACAATTGGCTTTGAAGAGAATGCCTTCAGCAGAGCAAGAGGCAATGTCACAGCGAGGTGTTAGCGCGTGGAACTTTGACGTTGAGGATTTAAAGGCTCAAGCATCCATGGTGCGAGATGATGATGATGATGATTTTTCGGAAATGATTGACACAGACGGAAAATTGAAATCCGTTTTTAGTTATAAGGTTGCAACTGATTGGAAATCCAGTTTAGGGAAGTCGAATGAAAATAATGAACCACCTTGGACTGATTGCAAAAGTGAAGTAAATGGTGATGACTCACAACAGGTTGAATGCGTGAATAGAAAGGACAAGCATCATGAAAGTGAAACATTGGAATCTGGTGGTCAACAAGGGACAGACTGGAAGAAAAATGGATCAAGCTCTGAAGCAACAGCATCTACATCGGAAACAGACATGGTACAGGCCAAGTCTAGAATTGTAGCAGTGAAAAGTCGTCAAACGCGTAGTGGGCCGCTCACGCCTGGTGGTGTGCTTAATCATTCTTTATCGGAGACGGGACGCAGTTTTGAAAGTGCCATTGCTATGTATAATGCACACAGAGGCAAGAAAGGCAGGAGTTCAGTTTTGTGGAAGAATTTAGCGGTTTGGTTAGAAGCTGCGTTTTTTTCGTGCGGTCCGAGTCTTGGCCTCTATGTCCGGATGAGCAAATGGGATGCAGCCACTGAGGTCAACATTCTGTCGGGAATGCCTCCGTTTGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

35.99

Weight (kDa)

8.19

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10730 AT4G10730 AT4G24100 AT4G24100 AT4G24100 AT4G24100
fragaria_vesca	FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990 FvH4_5g10990
malus_domestica	MD06G1117800.v1.1 MD14G1125200.v1.1
prunus_persica	Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1 Prupe.5G128900_v2.0.a1
pyrus_communis	pycom06g10950
rosa_chinensis	RchiOBHm_Chr7g0186821
rosa_laevigata	RLG00000004812
rosa_multiflora	Rmu_sc0022028.1_g000001 Rmu_ssc0000024.1_g000040
rosa_roxburghii	Rroxscaffold_3G00267790
rosa_rugosa	Rorug06G0477000 Rorug06G0477100 Rorug06G0477200 Rorug06G0477300
rosa_samantha	Rh4AG189200 Rh4AG190000 Rh7AG063500 Rh7BG079900 Rh7CG084000 Rh7DG084900
rosa_wichuraiana	Rw7G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	724
AccII	CGCG	3 cut(s)	42, 311, 712
AccIII	TCCGGA	2 cut(s)	163, 906
AciI	CCGC	4 cut(s)	40, 722, 851, 882
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	2 cut(s)	255, 654
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	3 cut(s)	459, 893, 965
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	710
AgsI	TTSAA	6 cut(s)	133, 148, 259, 412, 539, 779
AjnI	CCWGG	2 cut(s)	22, 730
AluBI	AGCT	4 cut(s)	169, 232, 630, 866
AluI	AGCT	4 cut(s)	169, 232, 630, 866
Alw26I	GTCTC	2 cut(s)	103, 755
AlwI	GGATC	1 cut(s)	631
AlwNI	CAGNNNCTG	1 cut(s)	932
Aor13HI	TCCGGA	2 cut(s)	163, 906
AoxI	GGCC	3 cut(s)	672, 719, 895
ApeKI	GCWGC	3 cut(s)	242, 866, 926
ApoI	RAATTY	1 cut(s)	844
Asp700I	GAANNNNTTC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	719, 884
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	884
BbvI	GCAGC	3 cut(s)	254, 853, 938
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BciT130I	CCWGG	2 cut(s)	24, 732
BcoDI	GTCTC	2 cut(s)	103, 755
BfaI	CTAG	1 cut(s)	681
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	204
BisI	GCNGC	4 cut(s)	243, 722, 867, 927
BlsI	GCNGC	4 cut(s)	244, 723, 868, 928
Bme1390I	CCNGG	2 cut(s)	24, 732
Bme18I	GGWCC	1 cut(s)	884
BmgT120I	GGNCC	2 cut(s)	719, 884
BmrFI	CCNGG	2 cut(s)	24, 732
BmsI	GCATC	5 cut(s)	229, 356, 571, 653, 913
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	351, 488
BsaWI	WCCGGW	2 cut(s)	163, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 893, 965
Bse1I	ACTGG	2 cut(s)	453, 614
Bse3DI	GCAATG	3 cut(s)	87, 294, 786
BseAI	TCCGGA	2 cut(s)	163, 906
BseBI	CCWGG	2 cut(s)	24, 732
BseDI	CCNNGG	2 cut(s)	351, 488
BseGI	GGATG	3 cut(s)	347, 915, 928
BseLI	CCNNNNNNNGG	3 cut(s)	459, 893, 965
BseMI	GCAATG	3 cut(s)	87, 294, 786
BseMII	CTCAG	1 cut(s)	924
BseNI	ACTGG	2 cut(s)	453, 614
BseXI	GCAGC	3 cut(s)	254, 853, 938
Bsh1236I	CGCG	3 cut(s)	42, 311, 712
BshFI	GGCC	3 cut(s)	674, 721, 897
BsiSI	CCGG	2 cut(s)	164, 907
BslFI	GGGAC	2 cut(s)	616, 780
BslI	CCNNNNNNNGG	3 cut(s)	459, 893, 965
BsmAI	GTCTC	2 cut(s)	103, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	616, 780
BsmI	GAATGC	4 cut(s)	19, 270, 545, 960
BsnI	GGCC	3 cut(s)	674, 721, 897
Bso31I	GGTCTC	1 cut(s)	103
Bsp13I	TCCGGA	2 cut(s)	163, 906
Bsp143I	GATC	2 cut(s)	97, 623
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	4 cut(s)	40, 722, 851, 882
BspANI	GGCC	3 cut(s)	674, 721, 897
BspCNI	CTCAG	1 cut(s)	925
BspEI	TCCGGA	2 cut(s)	163, 906
BspFNI	CGCG	3 cut(s)	42, 311, 712
BspHI	TCATGA	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	724
BsrDI	GCAATG	3 cut(s)	87, 294, 786
BsrI	ACTGG	2 cut(s)	453, 614
BssECI	CCNNGG	2 cut(s)	351, 488
BssMI	GATC	2 cut(s)	97, 623
BssT1I	CCWWGG	2 cut(s)	351, 488
Bst2UI	CCWGG	2 cut(s)	24, 732
Bst6I	CTCTTC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	933
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	347, 915, 928
BstFNI	CGCG	3 cut(s)	42, 311, 712
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	2 cut(s)	100, 626
BstMAI	GTCTC	2 cut(s)	103, 755
BstMBI	GATC	2 cut(s)	97, 623
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 718, 727, 819
BstNI	CCWGG	2 cut(s)	24, 732
BstSCI	CCNGG	2 cut(s)	22, 730
BstUI	CGCG	3 cut(s)	42, 311, 712
BstV1I	GCAGC	3 cut(s)	254, 853, 938
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	674, 721, 897
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	347, 915, 928
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	2 cut(s)	699, 930
BveI	ACCTGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	719, 884
CpoI	CGGWCCG	1 cut(s)	884
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	668
CspI	CGGWCCG	1 cut(s)	884
CviAII	CATG	3 cut(s)	352, 566, 664
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	1 cut(s)	933
DpnI	GATC	2 cut(s)	99, 625
DpnII	GATC	2 cut(s)	97, 623
DraI	TTTAAA	2 cut(s)	67, 336
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	351, 488
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	884
Eco57I	CTGAAG	2 cut(s)	255, 654
EcoRII	CCWGG	2 cut(s)	22, 730
EcoT14I	CCWWGG	2 cut(s)	351, 488
ErhI	CCWWGG	2 cut(s)	351, 488
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	3 cut(s)	355, 569, 667
FaiI	YATR	9 cut(s)	8, 36, 353, 429, 567, 665, 794, 798, 903
FaqI	GGGAC	2 cut(s)	616, 780
FatI	CATG	3 cut(s)	351, 565, 663
Fnu4HI	GCNGC	4 cut(s)	243, 722, 867, 927
FokI	GGATG	3 cut(s)	334, 922, 935
Fsp4HI	GCNGC	4 cut(s)	243, 722, 867, 927
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	243, 722, 867, 927
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	674, 721, 897
HapII	CCGG	2 cut(s)	164, 907
HgaI	GACGC	1 cut(s)	777
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	355, 569, 667
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	596, 940
HindII	GTYRAC	2 cut(s)	596, 940
HinfI	GANTC	4 cut(s)	211, 524, 584, 889
HpaII	CCGG	2 cut(s)	164, 907
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	189, 596, 940
Hpy188I	TCNGA	5 cut(s)	385, 634, 655, 760, 888
Hpy188III	TCNNGA	6 cut(s)	148, 164, 566, 681, 907, 951
Hpy8I	GTNNAC	3 cut(s)	189, 596, 940
HpyAV	CCTTC	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	7 cut(s)	80, 155, 242, 437, 501, 803, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 718, 727, 819
HpyF3I	CTNAG	1 cut(s)	933
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	355, 569, 667
HspAI	GCGC	1 cut(s)	309
Kpn2I	TCCGGA	2 cut(s)	163, 906
Kzo9I	GATC	2 cut(s)	97, 623
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	3 cut(s)	254, 853, 938
LweI	GCATC	5 cut(s)	229, 356, 571, 653, 913
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	99, 625
MbiI	CCGCTC	1 cut(s)	724
MboI	GATC	2 cut(s)	97, 623
MboII	GAAGA	3 cut(s)	271, 625, 853
MfeI	CAATTG	1 cut(s)	248
MluCI	AATT	6 cut(s)	125, 182, 248, 407, 684, 844
MluI	ACGCGT	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	518, 898
MroI	TCCGGA	2 cut(s)	163, 906
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	6 cut(s)	66, 177, 219, 234, 335, 744
MslI	CAYNNNNRTG	2 cut(s)	570, 791
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	164, 907
MspR9I	CCNGG	2 cut(s)	24, 732
MunI	CAATTG	1 cut(s)	248
Mva1269I	GAATGC	4 cut(s)	19, 270, 545, 960
MvaI	CCWGG	2 cut(s)	24, 732
MvnI	CGCG	3 cut(s)	42, 311, 712
MwoI	GCNNNNNNNGC	4 cut(s)	251, 718, 727, 819
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	97, 623
NlaIII	CATG	3 cut(s)	355, 569, 667
NmuCI	GTSAC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	709, 884
PctI	GAATGC	4 cut(s)	19, 270, 545, 960
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	211, 584
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	244, 723, 868, 928
PleI	GAGTC	2 cut(s)	518, 897
PpsI	GAGTC	2 cut(s)	518, 897
PsiI	TTATAA	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	22, 730
PspGI	CCWGG	2 cut(s)	22, 730
PspPI	GGNCC	2 cut(s)	719, 884
PstNI	CAGNNNCTG	1 cut(s)	932
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
RseI	CAYNNNNRTG	2 cut(s)	570, 791
Rsr2I	CGGWCCG	1 cut(s)	884
RsrII	CGGWCCG	1 cut(s)	884
SaqAI	TTAA	6 cut(s)	66, 177, 219, 234, 335, 744
SatI	GCNGC	4 cut(s)	243, 722, 867, 927
Sau3AI	GATC	2 cut(s)	97, 623
Sau96I	GGNCC	2 cut(s)	719, 884
SchI	GAGTC	2 cut(s)	518, 898
ScrFI	CCNGG	2 cut(s)	24, 732
SfaNI	GCATC	5 cut(s)	229, 356, 571, 653, 913
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	2 cut(s)	570, 791
SmlI	CTYRAG	2 cut(s)	176, 342
SmoI	CTYRAG	2 cut(s)	176, 342
Sse9I	AATT	6 cut(s)	125, 182, 248, 407, 684, 844
SsiI	CCGC	4 cut(s)	40, 722, 851, 882
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	22, 730
StyI	CCWWGG	2 cut(s)	351, 488
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	467
TasI	AATT	6 cut(s)	125, 182, 248, 407, 684, 844
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	211, 584
Tru1I	TTAA	6 cut(s)	66, 177, 219, 234, 335, 744
Tru9I	TTAA	6 cut(s)	66, 177, 219, 234, 335, 744
TscAI	CASTG	2 cut(s)	699, 937
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	3 cut(s)	242, 866, 926
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	3 cut(s)	486, 495, 582
TspGWI	ACGGA	3 cut(s)	406, 417, 951
TspRI	CASTG	2 cut(s)	699, 937
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	884
XapI	RAATTY	1 cut(s)	844
XbaI	TCTAGA	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.