Rorug06G0477100

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
59904836 .. 59906561
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0477100.1

Sequence Viewer

Length: 975 bp
ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGCTTTGCAGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCGTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATAGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTCATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAACGGAGCAGCAGTCTTCATTTCAGTGTCAAGAGGAGGCTCTAAATATGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCAATTTCTCGGCTTCGCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGACGGCGAGATTACTACTCTGCAACACTCGATGTCGTCCGGGTTTCAATTGACGCACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTCTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAGGAAATCAAGAGTTAAGAGAGTGACGAGAATCCCTGCTATTAGTACGAAAATGGCTGATATCCCAGCTGATGAGTATTCATGGAGAAAGTACGGCCAAAAACCAATCAAGGGTTCCCCTCATCCAAGAGGGTACTACAAGTGCAGTAGCCAGAGAGGGTGCCCTGCACGAAAACACGTAGAGCGAGCTGTAGATGATCCGAGCATGCTGATAGTGACGTACGAAGGCGATCACAATCACTCCCAAGCTGTCACGGAGGCCATGGCAGCCATTGTCCTCGAATCGTCGTAG

Protein Analysis

324

Amino Acids

35.19

Weight (kDa)

9.45

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 203 - 248 2.9e-14 Plant zinc cluster domain
WRKY PF03106 252 - 308 1.5e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
AatII GACGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 843
AciI CCGC 6 cut(s) 173, 182, 419, 467, 632, 635
AclWI GGATC 3 cut(s) 82, 95, 875
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 5 cut(s) 439, 730, 776, 818, 905
AfiI CCNNNNNNNGG 3 cut(s) 84, 684, 794
AflIII ACRYGT 2 cut(s) 555, 859
AgeI ACCGGT 2 cut(s) 230, 403
AgsI TTSAA 5 cut(s) 135, 385, 448, 545, 663
AhlI ACTAGT 3 cut(s) 286, 434, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 781, 813
AluBI AGCT 7 cut(s) 13, 36, 114, 167, 752, 872, 932
AluI AGCT 7 cut(s) 13, 36, 114, 167, 752, 872, 932
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 3 cut(s) 82, 95, 875
AoxI GGCC 2 cut(s) 778, 942
ApeKI GCWGC 5 cut(s) 41, 74, 149, 310, 950
ApoI RAATTY 1 cut(s) 481
AsiGI ACCGGT 2 cut(s) 230, 403
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 2 cut(s) 247, 479
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 848
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 843
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 4 cut(s) 117, 309, 359, 558
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 53, 86, 136, 322, 962
BccI CCATC 1 cut(s) 13
BceAI ACGGC 2 cut(s) 517, 793
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 618
BcuI ACTAGT 3 cut(s) 286, 434, 440
BfaI CTAG 3 cut(s) 287, 435, 441
BfmI CTRYAG 1 cut(s) 873
BisI GCNGC 7 cut(s) 42, 75, 150, 311, 633, 636, 951
BlsI GCNGC 7 cut(s) 43, 76, 151, 312, 634, 637, 952
BmcAI AGTACT 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 89, 799, 845
BmrFI CCNGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 619, 656
BpiI GAAGAC 4 cut(s) 117, 309, 359, 558
BplI GAGNNNNNCTC 2 cut(s) 598, 630
Bpu14I TTCGAA 2 cut(s) 247, 479
BpuMI CCSGG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 862
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 78, 945
BsaWI WCCGGW 2 cut(s) 230, 403
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 908, 938
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 684, 794
Bse118I RCCGGY 3 cut(s) 230, 403, 463
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 918
BseDI CCNNGG 2 cut(s) 78, 945
BseGI GGATG 2 cut(s) 631, 805
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 3 cut(s) 84, 684, 794
BseMII CTCAG 1 cut(s) 655
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 350, 573
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 5 cut(s) 53, 86, 136, 322, 962
BseYI CCCAGC 2 cut(s) 83, 748
BsgI GTGCAG 2 cut(s) 834, 847
BshFI GGCC 2 cut(s) 780, 944
BshNI GGYRCC 1 cut(s) 843
BshTI ACCGGT 2 cut(s) 230, 403
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 4 cut(s) 231, 404, 464, 537
BsiWI CGTACG 1 cut(s) 903
BslFI GGGAC 2 cut(s) 381, 512
BslI CCNNNNNNNGG 3 cut(s) 84, 684, 794
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 381, 512
BsnI GGCC 2 cut(s) 780, 944
Bsp119I TTCGAA 2 cut(s) 247, 479
Bsp1286I GDGCHC 2 cut(s) 15, 848
Bsp143I GATC 3 cut(s) 87, 880, 913
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 6 cut(s) 173, 182, 419, 467, 632, 635
BspANI GGCC 2 cut(s) 780, 944
BspCNI CTCAG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 89, 799, 845
BspPI GGATC 3 cut(s) 82, 95, 875
BspT104I TTCGAA 2 cut(s) 247, 479
BspT107I GGYRCC 1 cut(s) 843
BsrFI RCCGGY 3 cut(s) 230, 403, 463
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 3 cut(s) 230, 403, 463
BssECI CCNNGG 2 cut(s) 78, 945
BssMI GATC 3 cut(s) 87, 880, 913
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 945
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 4 cut(s) 48, 244, 591, 664
BstACI GRCGYC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 862
BstBI TTCGAA 2 cut(s) 247, 479
BstC8I GCNNGC 3 cut(s) 465, 870, 890
BstDEI CTNAG 1 cut(s) 641
BstDSI CCRYGG 1 cut(s) 945
BstF5I GGATG 2 cut(s) 631, 805
BstKTI GATC 3 cut(s) 90, 883, 916
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 3 cut(s) 87, 880, 913
BstMWI GCNNNNNNNGC 5 cut(s) 80, 179, 418, 464, 950
BstNSI RCATGY 2 cut(s) 559, 892
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 848
BstV1I GCAGC 5 cut(s) 53, 86, 136, 322, 962
BstV2I GAAGAC 4 cut(s) 117, 309, 359, 558
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 2 cut(s) 780, 944
BtgI CCRYGG 1 cut(s) 945
BtsCI GGATG 2 cut(s) 631, 805
BtsIMutI CAGTG 3 cut(s) 332, 567, 670
Cac8I GCNNGC 3 cut(s) 465, 870, 890
CciI TCATGA 1 cut(s) 15
Cfr10I RCCGGY 3 cut(s) 230, 403, 463
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 559
Csp6I GTAC 5 cut(s) 438, 729, 775, 817, 904
CspAI ACCGGT 2 cut(s) 230, 403
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 6 cut(s) 16, 178, 556, 765, 889, 946
CviQI GTAC 5 cut(s) 438, 729, 775, 817, 904
DdeI CTNAG 1 cut(s) 641
DpnI GATC 3 cut(s) 89, 882, 915
DpnII GATC 3 cut(s) 87, 880, 913
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 4 cut(s) 48, 244, 591, 664
EarI CTCTTC 4 cut(s) 48, 244, 591, 664
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 945
Eco24I GRGCYC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 481
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 945
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 945
FaeI CATG 6 cut(s) 19, 181, 559, 768, 892, 949
FaqI GGGAC 2 cut(s) 381, 512
FatI CATG 6 cut(s) 15, 177, 555, 764, 888, 945
Fnu4HI GCNGC 7 cut(s) 42, 75, 150, 311, 633, 636, 951
FokI GGATG 2 cut(s) 638, 792
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 7 cut(s) 42, 75, 150, 311, 633, 636, 951
FspBI CTAG 3 cut(s) 287, 435, 441
GluI GCNGC 7 cut(s) 42, 75, 150, 311, 633, 636, 951
GsaI CCCAGC 2 cut(s) 87, 752
HaeIII GGCC 2 cut(s) 780, 944
HapII CCGG 4 cut(s) 231, 404, 464, 537
HgaI GACGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 19, 181, 559, 768, 892, 949
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 714, 965
HpaII CCGG 4 cut(s) 231, 404, 464, 537
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 31, 275, 416
Hpy188I TCNGA 2 cut(s) 197, 885
Hpy188III TCNNGA 5 cut(s) 16, 91, 332, 663, 693
Hpy8I GTNNAC 3 cut(s) 31, 275, 416
Hpy99I CGWCG 2 cut(s) 601, 973
HpyAV CCTTC 2 cut(s) 600, 902
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 3 cut(s) 63, 861, 902
HpyCH4V TGCA 4 cut(s) 41, 520, 828, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 179, 418, 464, 950
HpyF3I CTNAG 1 cut(s) 641
HpySE526I ACGT 3 cut(s) 63, 861, 902
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 19, 181, 559, 768, 892, 949
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Kzo9I GATC 3 cut(s) 87, 880, 913
LmnI GCTCC 2 cut(s) 10, 307
Lsp1109I GCAGC 5 cut(s) 53, 86, 136, 322, 962
LweI GCATC 2 cut(s) 619, 656
MaeI CTAG 3 cut(s) 287, 435, 441
MaeII ACGT 3 cut(s) 63, 861, 902
MaeIII GTNAC 5 cut(s) 233, 259, 706, 898, 934
MalI GATC 3 cut(s) 89, 882, 915
MboI GATC 3 cut(s) 87, 880, 913
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 15, 848
MluCI AATT 3 cut(s) 448, 481, 545
MmeI TCCRAC 1 cut(s) 195
MreI CGCCGGCG 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 2 cut(s) 602, 699
MslI CAYNNNNRTG 3 cut(s) 182, 325, 560
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 231, 404, 464, 537
MspR9I CCNGG 1 cut(s) 538
MunI CAATTG 1 cut(s) 545
MwoI GCNNNNNNNGC 5 cut(s) 80, 179, 418, 464, 950
NaeI GCCGGC 1 cut(s) 465
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 1 cut(s) 945
NdeII GATC 3 cut(s) 87, 880, 913
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 6 cut(s) 19, 181, 559, 768, 892, 949
NlaIV GGNNCC 3 cut(s) 89, 799, 845
NmeAIII GCCGAG 2 cut(s) 59, 434
NmuCI GTSAC 5 cut(s) 233, 259, 706, 898, 934
NspI RCATGY 2 cut(s) 559, 892
NspV TTCGAA 2 cut(s) 247, 479
PaeI GCATGC 1 cut(s) 892
PagI TCATGA 1 cut(s) 15
PciI ACATGT 1 cut(s) 555
PdiI GCCGGC 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 714, 965
Pfl23II CGTACG 1 cut(s) 903
PinAI ACCGGT 2 cut(s) 230, 403
PkrI GCNGC 7 cut(s) 43, 76, 151, 312, 634, 637, 952
Ppu21I YACGTR 1 cut(s) 862
PpuMI RGGWCCY 1 cut(s) 254
PscI ACATGT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 83, 748
PspLI CGTACG 1 cut(s) 903
PspN4I GGNNCC 3 cut(s) 89, 799, 845
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 5 cut(s) 439, 730, 776, 818, 905
RsaNI GTAC 5 cut(s) 438, 729, 775, 817, 904
RseI CAYNNNNRTG 3 cut(s) 182, 325, 560
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 602, 699
SatI GCNGC 7 cut(s) 42, 75, 150, 311, 633, 636, 951
Sau3AI GATC 3 cut(s) 87, 880, 913
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 538
SduI GDGCHC 2 cut(s) 15, 848
SfaNI GCATC 2 cut(s) 619, 656
SfcI CTRYAG 1 cut(s) 873
SfuI TTCGAA 2 cut(s) 247, 479
SgrAI CRCCGGYG 1 cut(s) 463
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 3 cut(s) 182, 325, 560
SpeI ACTAGT 3 cut(s) 286, 434, 440
SphI GCATGC 1 cut(s) 892
Sse9I AATT 3 cut(s) 448, 481, 545
SsiI CCGC 6 cut(s) 173, 182, 419, 467, 632, 635
SspMI CTAG 3 cut(s) 287, 435, 441
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 3 cut(s) 66, 864, 905
TaqI TCGA 4 cut(s) 247, 479, 527, 963
TasI AATT 3 cut(s) 448, 481, 545
TatI WGTACW 1 cut(s) 437
TauI GCSGC 2 cut(s) 635, 638
TfiI GAWTC 2 cut(s) 714, 965
Tru1I TTAA 2 cut(s) 602, 699
Tru9I TTAA 2 cut(s) 602, 699
TscAI CASTG 3 cut(s) 332, 567, 677
TseFI GTSAC 5 cut(s) 233, 259, 706, 898, 934
TseI GCWGC 5 cut(s) 41, 74, 149, 310, 950
Tsp45I GTSAC 5 cut(s) 233, 259, 706, 898, 934
TspDTI ATGAA 5 cut(s) 97, 198, 309, 365, 753
TspGWI ACGGA 2 cut(s) 320, 953
TspRI CASTG 3 cut(s) 332, 567, 677
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 481
XceI RCATGY 2 cut(s) 559, 892
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 287, 435, 441
ZraI GACGTC 1 cut(s) 64
ZrmI AGTACT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.