Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

17924539 .. 17927224

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGAAACGGCGAGTCGTTGCGGTCGTGGCGTCGCTGCTTCTCTTCGGAGTCGTGGCCGTAGTGGTGCTGCTGTTCGCGCCTGGATTTGACCGAGATGGATTTTTGAAGCCTGAATCGTCTGAAGCTGCAAACTCCACACTCACTGCAATCCACCGCAAGCTGCTTGTTCGTGCGACAGCAATGGAGGAACCAAACAGGATTCGGGGAGACAAGTGCAGCAAGGCAGACATAGTGATAAACCAGGGCCCCACACCCCCGCTGCCAAGTGGCATCCCCACATACACCGTCGAGATCATGAACATGTGCGTCACCGGCTGCGACATCTCCCACATCCACCTCACCTGCGGCTGGTTCAGCTCCGCCCGCCTCGTCAACCCCAAGATCTTCAAGCGCCTCCGCTACAACGACTGCCTCGTCAACGACGGCAAGCCCCTCGCCAACGGCGGCACGGTGTCGTTTCAGTACGCCAACACTTTCAGCTACAAGCTCTCCGTCTCCTCGGTCACGTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.69

Weight (kDa)

9.28

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	74 - 172	4.8e-43	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
AasI	GACNNNNNNGTC	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	353
AccII	CGCG	1 cut(s)	80
AciI	CCGC	8 cut(s)	23, 157, 260, 348, 363, 367, 400, 447
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	144
AcvI	CACGTG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	109, 391
AjnI	CCWGG	2 cut(s)	82, 243
AluBI	AGCT	5 cut(s)	128, 163, 360, 483, 490
AluI	AGCT	5 cut(s)	128, 163, 360, 483, 490
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	2 cut(s)	204, 502
AoxI	GGCC	2 cut(s)	57, 247
ApaI	GGGCCC	1 cut(s)	251
ApeKI	GCWGC	7 cut(s)	37, 70, 128, 163, 219, 262, 318
AspLEI	GCGC	2 cut(s)	82, 396
AspS9I	GGNCC	2 cut(s)	247, 248
AsuHPI	GGTGA	2 cut(s)	304, 334
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	7 cut(s)	24, 57, 115, 150, 231, 249, 305
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	4 cut(s)	26, 44, 442, 460
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	2 cut(s)	84, 245
BcoDI	GTCTC	2 cut(s)	204, 502
BfoI	RGCGCY	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	9 cut(s)	38, 71, 129, 164, 220, 263, 319, 349, 448
BlsI	GCNGC	9 cut(s)	39, 72, 130, 165, 221, 264, 320, 350, 449
Bme1390I	CCNGG	2 cut(s)	84, 245
BmgT120I	GGNCC	2 cut(s)	247, 248
BmiI	GGNNCC	3 cut(s)	192, 249, 250
BmrFI	CCNGG	2 cut(s)	84, 245
BmsI	GCATC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	244, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	84, 245
BseDI	CCNNGG	2 cut(s)	244, 501
BseGI	GGATG	2 cut(s)	273, 333
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	7 cut(s)	24, 57, 115, 150, 231, 249, 305
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	59, 249
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	204, 502
BsmBI	CGTCTC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	59, 249
Bsp120I	GGGCCC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	251, 515
Bsp143I	GATC	2 cut(s)	294, 384
BspACI	CCGC	8 cut(s)	23, 157, 260, 348, 363, 367, 400, 447
BspANI	GGCC	2 cut(s)	59, 249
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	192, 249, 250
BspMI	ACCTGC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	244, 501
BssMI	GATC	2 cut(s)	294, 384
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	84, 245
Bst4CI	ACNGT	2 cut(s)	289, 454
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	161, 367, 431
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	273, 333
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	82, 396
BstKTI	GATC	2 cut(s)	297, 387
BstMAI	GTCTC	2 cut(s)	204, 502
BstMBI	GATC	2 cut(s)	294, 384
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 79, 315, 357, 366
BstNI	CCWGG	2 cut(s)	84, 245
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	82, 243
BstSLI	GKGCMC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	7 cut(s)	24, 57, 115, 150, 231, 249, 305
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	59, 249
BtsCI	GGATG	2 cut(s)	273, 333
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	161, 367, 431
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	2 cut(s)	82, 396
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	247, 248
CseI	GACGC	2 cut(s)	21, 298
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	298, 304
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	296, 386
DpnII	GATC	2 cut(s)	294, 384
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	510
EcoO109I	RGGNCCY	2 cut(s)	247, 248
EcoRII	CCWGG	2 cut(s)	82, 243
EcoT38I	GRGCYC	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	502
FaeI	CATG	2 cut(s)	301, 307
FaiI	YATR	4 cut(s)	233, 283, 299, 305
FatI	CATG	2 cut(s)	297, 303
FauI	CCCGC	2 cut(s)	267, 374
Fnu4HI	GCNGC	9 cut(s)	38, 71, 129, 164, 220, 263, 319, 349, 448
FokI	GGATG	2 cut(s)	260, 320
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	9 cut(s)	38, 71, 129, 164, 220, 263, 319, 349, 448
GlaI	GCGC	2 cut(s)	81, 395
GluI	GCNGC	9 cut(s)	38, 71, 129, 164, 220, 263, 319, 349, 448
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	59, 249
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	2 cut(s)	21, 298
HhaI	GCGC	2 cut(s)	82, 396
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	301, 307
Hin6I	GCGC	2 cut(s)	80, 394
HinP1I	GCGC	2 cut(s)	80, 394
HincII	GTYRAC	2 cut(s)	376, 421
HindII	GTYRAC	2 cut(s)	376, 421
HinfI	GANTC	4 cut(s)	15, 51, 116, 202
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	304, 334
Hpy166II	GTNNAC	2 cut(s)	376, 421
Hpy188I	TCNGA	2 cut(s)	50, 124
Hpy188III	TCNNGA	2 cut(s)	292, 298
Hpy8I	GTNNAC	2 cut(s)	376, 421
Hpy99I	CGWCG	3 cut(s)	37, 293, 428
HpyCH4III	ACNGT	2 cut(s)	289, 454
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	131, 149, 219
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 79, 315, 357, 366
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	301, 307
HspAI	GCGC	2 cut(s)	80, 394
Kzo9I	GATC	2 cut(s)	294, 384
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	9 cut(s)	69, 96, 126, 184, 230, 257, 328, 337, 358
Lsp1109I	GCAGC	7 cut(s)	24, 57, 115, 150, 231, 249, 305
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	310, 505
MalI	GATC	2 cut(s)	296, 386
MboI	GATC	2 cut(s)	294, 384
MboII	GAAGA	2 cut(s)	37, 379
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	251, 515
MlyI	GAGTC	2 cut(s)	24, 60
MnlI	CCTC	7 cut(s)	181, 350, 380, 407, 425, 446, 511
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	84, 245
MvaI	CCWGG	2 cut(s)	84, 245
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	29, 79, 315, 357, 366
NdeII	GATC	2 cut(s)	294, 384
NlaIII	CATG	2 cut(s)	301, 307
NlaIV	GGNNCC	3 cut(s)	192, 249, 250
NmuCI	GTSAC	2 cut(s)	310, 505
NspI	RCATGY	1 cut(s)	307
PagI	TCATGA	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	353
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 414
PfeI	GAWTC	2 cut(s)	116, 202
PkrI	GCNGC	9 cut(s)	39, 72, 130, 165, 221, 264, 320, 350, 449
PleI	GAGTC	2 cut(s)	23, 59
PmaCI	CACGTG	1 cut(s)	510
PmlI	CACGTG	1 cut(s)	510
PpsI	GAGTC	2 cut(s)	23, 59
Ppu21I	YACGTR	1 cut(s)	510
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	82, 243
PspCI	CACGTG	1 cut(s)	510
PspGI	CCWGG	2 cut(s)	82, 243
PspN4I	GGNNCC	3 cut(s)	192, 249, 250
PspOMI	GGGCCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	247, 248
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	302
SatI	GCNGC	9 cut(s)	38, 71, 129, 164, 220, 263, 319, 349, 448
Sau3AI	GATC	2 cut(s)	294, 384
Sau96I	GGNCC	2 cut(s)	247, 248
SchI	GAGTC	2 cut(s)	24, 60
ScrFI	CCNGG	2 cut(s)	84, 245
SduI	GDGCHC	2 cut(s)	251, 515
SetI	ASST	8 cut(s)	130, 165, 342, 347, 362, 485, 492, 512
SfaNI	GCATC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	302
SsiI	CCGC	8 cut(s)	23, 157, 260, 348, 363, 367, 400, 447
StyD4I	CCNGG	2 cut(s)	82, 243
TaaI	ACNGT	2 cut(s)	289, 454
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	291
TaqII	GACCGA	2 cut(s)	108, 493
TauI	GCSGC	2 cut(s)	351, 450
TfiI	GAWTC	2 cut(s)	116, 202
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	310, 505
TseI	GCWGC	7 cut(s)	37, 70, 128, 163, 219, 262, 318
Tsp45I	GTSAC	2 cut(s)	310, 505
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.