Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Reverse (-)

19860565 .. 19861364

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAGTTGCTGTCGAGAAGACACCTCTACTGTTGTCTCGAAGCTGGATGGCGAAGATGGACGGATTGTGTTGAAGGCTCAGGGCAGCTCCTTTGCACTGAACTAAGAAAGCTGGGAGCAACTGTTGAAGAGGGACCAGATTACTGCATAATCACACCGCCAGAAAAATTAAACGTGACAGCAATAGACACGTATGATGACCACCGAATGGCCATGGCTTTCTCTCTTGCTGCCTGTGGAGACGTTCCAGTTACTCTCAAGGATCCCGGTTGTACCAGAAAAACATTCCCCGATTACTTTGAAGTCCTCAGGAAGTTTACCAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

5.88

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	31 - 103	1.3e-22	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	210
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	74, 128, 302
AluBI	AGCT	3 cut(s)	44, 88, 112
AluI	AGCT	3 cut(s)	44, 88, 112
Alw26I	GTCTC	2 cut(s)	41, 234
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	85, 230
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	97, 217
BccI	CCATC	2 cut(s)	42, 51
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	41, 234
BisI	GCNGC	2 cut(s)	86, 231
BlsI	GCNGC	2 cut(s)	87, 232
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	135, 264
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	267
BsaAI	YACGTR	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	93, 322
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	97, 217
BseYI	CCCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	41, 234
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	92, 321
BspLI	GGNNCC	2 cut(s)	135, 264
BspPI	GGATC	2 cut(s)	257, 270
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	32, 124
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	79, 104, 308
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	2 cut(s)	41, 234
BstMBI	GATC	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	97, 217
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	44, 78, 88, 112, 212, 218
CviKI_1	RGCY	6 cut(s)	44, 78, 88, 112, 212, 218
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	3 cut(s)	79, 104, 308
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	149, 195, 215
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	86, 231
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	86, 231
GluI	GCNGC	2 cut(s)	86, 231
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	1 cut(s)	217
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188III	TCNNGA	3 cut(s)	15, 38, 310
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	32, 124
HpyCH4IV	ACGT	3 cut(s)	174, 191, 243
HpyCH4V	TGCA	2 cut(s)	96, 147
HpyF3I	CTNAG	3 cut(s)	79, 104, 308
HpySE526I	ACGT	3 cut(s)	174, 191, 243
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	93, 116
Lsp1109I	GCAGC	2 cut(s)	97, 217
MaeII	ACGT	3 cut(s)	174, 191, 243
MaeIII	GTNAC	2 cut(s)	175, 250
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	3 cut(s)	30, 66, 140
MflI	RGATCY	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	212
MnlI	CCTC	3 cut(s)	35, 124, 317
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	267
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	135, 264
NmuCI	GTSAC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	87, 232
Ppu21I	YACGTR	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	135, 264
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	86, 231
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	7 cut(s)	27, 46, 90, 114, 177, 194, 246
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	32, 124
TaiI	ACGT	3 cut(s)	177, 194, 246
TaqI	TCGA	2 cut(s)	14, 39
TasI	AATT	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	85, 230
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.