Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

20618078 .. 20619864

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACGATCGATGATGCTATGCTAAATCTGATAGAGATCAATTCAGCTCGTCAGGACTCTTTCAATAGATCGGTTCTAGTACAAAAGGATGCACGCCTGTTGCGTGATGTACAAATACTGGCTTATTTCAGGCAGTGCTTTTCAAGTAGCCTAAACATTACTACAATCAAAGAACTTGCTAATGCTCTGGCCTCTCAACCTCCTTATGAAGTTCCAATATCTAGCATCAAGATTAGACATCTCCATTGTCAGGTCCCAAGTGCTGAGAGCTTCTACAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAGCTCTGAAGGATCGAAAGATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATTGACACATTCAAAGGCTTGCTATATGTGATAACACCTGTTCCAAGAGGCACTCTGGAGAAGGTCAATCTTTTCCTGCAAGGTTATATCCAAATTCCTACTGTGTTGTTGCAGGTAACTGAACCCCTTCCATGTAATACATGTTTCAGAACAATTGTTTGCTTCTTCATAGTCTCTCACATGCATTCAAGTTTGGATTCTTTGCCCCTTTCCAAATACAATATGATCTTAGAGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

203

Amino Acids

22.55

Weight (kDa)

6.89

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOL9_C	PF25467	65 - 155	3.4e-32	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	81, 111
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	64, 144, 283, 379, 555
AluBI	AGCT	3 cut(s)	47, 270, 312
AluI	AGCT	3 cut(s)	47, 270, 312
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	77, 222
BfmI	CTRYAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	3 cut(s)	4, 79, 234
BpmI	CTGGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	6, 36, 68, 320, 591
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	5 cut(s)	6, 36, 68, 320, 591
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	278, 469
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	94, 386
BstDEI	CTNAG	2 cut(s)	264, 595
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	5 cut(s)	9, 39, 71, 323, 594
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	5 cut(s)	6, 36, 68, 320, 591
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	510, 550
BstSFI	CTRYAG	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	94, 386
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	80, 110
CviAII	CATG	3 cut(s)	498, 507, 547
CviJI	RGCY	8 cut(s)	47, 122, 150, 191, 270, 300, 312, 384
CviKI_1	RGCY	8 cut(s)	47, 122, 150, 191, 270, 300, 312, 384
CviQI	GTAC	2 cut(s)	80, 110
DdeI	CTNAG	2 cut(s)	264, 595
DpnI	GATC	5 cut(s)	8, 38, 70, 322, 593
DpnII	GATC	5 cut(s)	6, 36, 68, 320, 591
Eco130I	CCWWGG	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	501, 510, 550
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	497, 506, 546
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	2 cut(s)	77, 222
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	501, 510, 550
HinfI	GANTC	2 cut(s)	56, 563
Hpy188I	TCNGA	3 cut(s)	30, 316, 515
Hpy188III	TCNNGA	3 cut(s)	53, 229, 422
HpyAV	CCTTC	4 cut(s)	311, 421, 503, 595
HpyCH4III	ACNGT	2 cut(s)	278, 469
HpyCH4V	TGCA	4 cut(s)	92, 445, 478, 550
HpyF3I	CTNAG	2 cut(s)	264, 595
Hsp92II	CATG	3 cut(s)	501, 510, 550
Kzo9I	GATC	5 cut(s)	6, 36, 68, 320, 591
LweI	GCATC	3 cut(s)	4, 79, 234
MaeI	CTAG	2 cut(s)	77, 222
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	5 cut(s)	8, 38, 70, 322, 593
MboI	GATC	5 cut(s)	6, 36, 68, 320, 591
MboII	GAAGA	1 cut(s)	523
MfeI	CAATTG	1 cut(s)	519
MluCI	AATT	4 cut(s)	40, 354, 459, 519
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	202, 210, 356, 407
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	492
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	550
NdeII	GATC	5 cut(s)	6, 36, 68, 320, 591
NlaIII	CATG	3 cut(s)	501, 510, 550
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	2 cut(s)	510, 550
PciI	ACATGT	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	563
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	253
PspPPI	RGGWCCY	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	81, 111
RsaNI	GTAC	2 cut(s)	80, 110
Sau3AI	GATC	5 cut(s)	6, 36, 68, 320, 591
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	4, 79, 234
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	4 cut(s)	40, 354, 459, 519
SspMI	CTAG	2 cut(s)	77, 222
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	278, 469
TaqI	TCGA	2 cut(s)	9, 323
TasI	AATT	4 cut(s)	40, 354, 459, 519
TatI	WGTACW	2 cut(s)	79, 109
TfiI	GAWTC	1 cut(s)	563
TscAI	CASTG	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	222, 523
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	2 cut(s)	510, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	77, 222
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.