pycom06g17810

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013826
Physical Location & Seq
Forward (+)
21748421 .. 21750301
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGAAAATCCTCCTTATGTTTGTTCCAGAAATTTGGGTTTGTGAAACATGTAGTTATGGAGGTACAGCCGCTAAAAAATCTGTCAGAAAGGAACTCTCTCACAAGGCTTCAGGATCAAACACCTTTGAGATGGTTCGCTCTGAAATGTCGCCATCTATACGCTCCAGAAGGCTTACTGAAGAGACCGGCAGCTCAGGTCCCCTTAGAAAGCAAATGTCACCAGGAACTGGCAGAGTAAAGTTTATTCCTATTGAAGCTATTAGAATGTCGTCATCTGGAGCACAAAGAGTGGAGCTTTCTTCACCGCGTAAATTGCACTCAAGCTCTGGCCGAGTAGATGCCAGGGAGACAATGTCCAGAAGGACTACCACTGAGTTTAAATCAGCCCCGAAAAAATCCTCTTCGGAGAAGGTGAAGGAAACTTACAAAAGGGTACCTGCTGGACGTGTCAAGCTTTTCGGACATGGCAGTGAAGGAATCAGTTCAACCACTCAGGCACAAGAGTCTAAATCATGCACTGAATTAAAATATAAAGCAATTCCTATCGAGTACAAGAATCAAGTTCTTAGAAAGAAAGAGTCACTGGATACTCCGTGCATCAACGATCCAGGAGGTAATTTACGTGCTGATGCTAGACCGAAGAACTCTGACCTTCAAGGATGTGATCCGCTGAACATTTTGCCCAAACCCGAGATAAATCTGCCAACTCACCCAGTTTTAGATGCTACTTGGTGCGGAAGCCTAGAGATCCTTGAGACGGTTTCTTGTGGTCAATTTTATGATGGATTCCGAGCTCATATCCCGGAAAAAGTTCATCCAAAAGCTTTAGAGTGTTCAAGGCTCATGCCTACCGTGCTCCAATGCACGTTGCTCCCTTGTTGCGACTCTTGGGCAGAAATCTTTCAGAATTACAGTCCTACCGTAAATGATATGGCGCTGTTTTTCTCCCCTGGCGATTTCGAGAGGTCTAAACAGCAGTACTTTAGCCTATTGGAACTTCTAGAGACGCGAGATATGGCGCTGCGGACTAACATAAATGGCGTCAGTCTATTGATTTTCTCTTCTAAAAGGCTAGATAAGGACTCTTATGGATCGGACATGGAATCCTTCCTCTGGGGAGCATATTACCCTGCAAAAGGCCGTCTGGCAGCTCCGCCCCTTCTGAACTACGACTCCCAAGCAAATGCGGCAAATGTTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

44.63

Weight (kDa)

8.99

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 244 - 375 7.6e-39 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 227
AccII CGCG 2 cut(s) 307, 1009
AciI CCGC 7 cut(s) 69, 305, 668, 735, 1024, 1154, 1187
AclWI GGATC 5 cut(s) 121, 599, 659, 742, 1099
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 93, 198
AcyI GRCGYC 1 cut(s) 1041
AfaI GTAC 4 cut(s) 64, 435, 551, 980
AfiI CCNNNNNNNGG 4 cut(s) 227, 757, 1113, 1136
AflIII ACRYGT 2 cut(s) 47, 445
AgsI TTSAA 4 cut(s) 254, 486, 656, 837
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 4 cut(s) 220, 341, 607, 949
AloI GAACNNNNNNTCC 2 cut(s) 1157, 1189
AluBI AGCT 8 cut(s) 192, 257, 295, 324, 454, 794, 824, 1151
AluI AGCT 8 cut(s) 192, 257, 295, 324, 454, 794, 824, 1151
Alw21I GWGCWC 3 cut(s) 283, 796, 858
Alw26I GTCTC 4 cut(s) 176, 341, 749, 998
AlwI GGATC 5 cut(s) 121, 599, 659, 742, 1099
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 2 cut(s) 328, 1138
ApeKI GCWGC 3 cut(s) 189, 1021, 1148
ApoI RAATTY 1 cut(s) 30
Asp700I GAANNNNTTC 3 cut(s) 481, 810, 900
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 2 cut(s) 937, 1021
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 4 cut(s) 210, 294, 424, 701
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
Bbv12I GWGCWC 3 cut(s) 283, 796, 858
BbvI GCAGC 3 cut(s) 201, 1008, 1160
BccI CCATC 3 cut(s) 124, 160, 776
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 4 cut(s) 222, 343, 609, 951
BciVI GTATCC 1 cut(s) 580
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 4 cut(s) 176, 341, 749, 998
BfaI CTAG 4 cut(s) 633, 743, 1001, 1073
BfoI RGCGCY 2 cut(s) 938, 1022
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 580
BisI GCNGC 5 cut(s) 69, 190, 1022, 1149, 1188
BlsI GCNGC 5 cut(s) 70, 191, 1023, 1150, 1189
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 5 cut(s) 222, 343, 609, 803, 951
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 199, 435
BmrFI CCNGG 5 cut(s) 222, 343, 609, 803, 951
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 4 cut(s) 328, 606, 619, 712
BmuI ACTGGG 1 cut(s) 707
BpmI CTGGAG 2 cut(s) 148, 297
Bpu10I CCTNAGC 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 304, 773
BpuMI CCSGG 1 cut(s) 803
BsaAI YACGTR 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 1041
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 342, 949
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 1157, 1187
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 757, 1113, 1136
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 232, 588, 713
BseBI CCWGG 4 cut(s) 222, 343, 609, 951
BseDI CCNNGG 2 cut(s) 342, 949
BseGI GGATG 2 cut(s) 665, 814
BseLI CCNNNNNNNGG 4 cut(s) 227, 757, 1113, 1136
BseMII CTCAG 3 cut(s) 207, 363, 506
BseNI ACTGG 3 cut(s) 232, 588, 713
BseXI GCAGC 3 cut(s) 201, 1008, 1160
Bsh1236I CGCG 2 cut(s) 307, 1009
BshFI GGCC 2 cut(s) 330, 1140
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 3 cut(s) 283, 796, 858
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 186, 803
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 4 cut(s) 227, 757, 1113, 1136
BsmAI GTCTC 4 cut(s) 176, 341, 749, 998
BsmBI CGTCTC 2 cut(s) 749, 998
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 330, 1140
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 3 cut(s) 283, 796, 858
Bsp143I GATC 5 cut(s) 113, 604, 664, 747, 1091
BspACI CCGC 7 cut(s) 69, 305, 668, 735, 1024, 1154, 1187
BspANI GGCC 2 cut(s) 330, 1140
BspCNI CTCAG 3 cut(s) 206, 364, 505
BspFNI CGCG 2 cut(s) 307, 1009
BspLI GGNNCC 2 cut(s) 199, 435
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 5 cut(s) 121, 599, 659, 742, 1099
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 3 cut(s) 232, 588, 713
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 342, 949
BssMI GATC 5 cut(s) 113, 604, 664, 747, 1091
BssNI GRCGYC 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 222, 343, 609, 951
Bst4CI ACNGT 4 cut(s) 760, 853, 914, 922
Bst6I CTCTTC 3 cut(s) 174, 406, 1066
BstACI GRCGYC 1 cut(s) 1041
BstBAI YACGTR 1 cut(s) 623
BstDEI CTNAG 5 cut(s) 193, 203, 372, 492, 566
BstENI CCTNNNNNAGG 1 cut(s) 1134
BstF5I GGATG 2 cut(s) 665, 814
BstFNI CGCG 2 cut(s) 307, 1009
BstH2I RGCGCY 2 cut(s) 938, 1022
BstHHI GCGC 2 cut(s) 937, 1021
BstKTI GATC 5 cut(s) 116, 607, 667, 750, 1094
BstMAI GTCTC 4 cut(s) 176, 341, 749, 998
BstMBI GATC 5 cut(s) 113, 604, 664, 747, 1091
BstMWI GCNNNNNNNGC 3 cut(s) 313, 853, 1187
BstNI CCWGG 4 cut(s) 222, 343, 609, 951
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 220, 341, 607, 801, 949
BstUI CGCG 2 cut(s) 307, 1009
BstV1I GCAGC 3 cut(s) 201, 1008, 1160
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 747
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 2 cut(s) 330, 1140
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 2 cut(s) 665, 814
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 4 cut(s) 369, 475, 516, 581
BveI ACCTGC 1 cut(s) 445
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 937, 1021
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 2 cut(s) 1015, 1030
Csp6I GTAC 4 cut(s) 63, 434, 550, 979
CviAII CATG 5 cut(s) 48, 464, 513, 844, 1099
CviQI GTAC 4 cut(s) 63, 434, 550, 979
DdeI CTNAG 5 cut(s) 193, 203, 372, 492, 566
DpnI GATC 5 cut(s) 115, 606, 666, 749, 1093
DpnII GATC 5 cut(s) 113, 604, 664, 747, 1091
DraI TTTAAA 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 174, 406, 1066
EarI CTCTTC 3 cut(s) 174, 406, 1066
EciI GGCGGA 1 cut(s) 1143
Ecl136II GAGCTC 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 2 cut(s) 93, 198
Eco88I CYCGRG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 1134
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 4 cut(s) 220, 341, 607, 949
EcoT38I GRGCYC 1 cut(s) 796
Esp3I CGTCTC 2 cut(s) 749, 998
FaeI CATG 5 cut(s) 51, 467, 516, 847, 1102
FaqI GGGAC 1 cut(s) 183
FatI CATG 5 cut(s) 47, 463, 512, 843, 1098
Fnu4HI GCNGC 5 cut(s) 69, 190, 1022, 1149, 1188
FokI GGATG 2 cut(s) 672, 801
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 5 cut(s) 69, 190, 1022, 1149, 1188
FspBI CTAG 4 cut(s) 633, 743, 1001, 1073
GlaI GCGC 2 cut(s) 936, 1020
GluI GCNGC 5 cut(s) 69, 190, 1022, 1149, 1188
GsuI CTGGAG 2 cut(s) 148, 297
HaeII RGCGCY 2 cut(s) 938, 1022
HaeIII GGCC 2 cut(s) 330, 1140
HapII CCGG 2 cut(s) 186, 803
HgaI GACGC 2 cut(s) 1015, 1030
HhaI GCGC 2 cut(s) 937, 1021
Hin1I GRCGYC 1 cut(s) 1041
Hin1II CATG 5 cut(s) 51, 467, 516, 847, 1102
Hin6I GCGC 2 cut(s) 935, 1019
HinP1I GCGC 2 cut(s) 935, 1019
HindIII AAGCTT 2 cut(s) 452, 822
HinfI GANTC 9 cut(s) 477, 503, 556, 578, 786, 884, 1082, 1103, 1172
HpaII CCGG 2 cut(s) 186, 803
HphI GGTGA 4 cut(s) 210, 294, 424, 701
Hpy188I TCNGA 9 cut(s) 86, 142, 406, 461, 649, 791, 906, 1096, 1164
Hpy188III TCNNGA 7 cut(s) 26, 111, 165, 276, 357, 961, 1001
HpyAV CCTTC 8 cut(s) 162, 354, 403, 409, 467, 662, 1117, 1169
HpyCH4III ACNGT 4 cut(s) 760, 853, 914, 922
HpyCH4IV ACGT 3 cut(s) 445, 622, 866
HpyCH4V TGCA 5 cut(s) 316, 516, 597, 864, 1133
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 853, 1187
HpyF3I CTNAG 5 cut(s) 193, 203, 372, 492, 566
HpySE526I ACGT 3 cut(s) 445, 622, 866
Hsp92I GRCGYC 1 cut(s) 1041
Hsp92II CATG 5 cut(s) 51, 467, 516, 847, 1102
HspAI GCGC 2 cut(s) 935, 1019
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 5 cut(s) 113, 604, 664, 747, 1091
LmnI GCTCC 7 cut(s) 167, 278, 292, 861, 876, 1118, 1156
Lsp1109I GCAGC 3 cut(s) 201, 1008, 1160
LweI GCATC 4 cut(s) 328, 606, 619, 712
MaeI CTAG 4 cut(s) 633, 743, 1001, 1073
MaeII ACGT 3 cut(s) 445, 622, 866
MaeIII GTNAC 2 cut(s) 216, 579
MalI GATC 5 cut(s) 115, 606, 666, 749, 1093
MboI GATC 5 cut(s) 113, 604, 664, 747, 1091
MboII GAAGA 5 cut(s) 191, 291, 393, 652, 1053
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 3 cut(s) 283, 796, 858
MluCI AATT 7 cut(s) 30, 311, 521, 537, 616, 773, 907
MlyI GAGTC 5 cut(s) 512, 587, 878, 1076, 1166
MnlI CCTC 6 cut(s) 20, 53, 409, 605, 957, 1121
MroXI GAANNNNTTC 3 cut(s) 481, 810, 900
MseI TTAA 2 cut(s) 378, 524
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 2 cut(s) 186, 803
MspR9I CCNGG 5 cut(s) 222, 343, 609, 803, 951
MvaI CCWGG 4 cut(s) 222, 343, 609, 951
MvnI CGCG 2 cut(s) 307, 1009
MwoI GCNNNNNNNGC 3 cut(s) 313, 853, 1187
NciI CCSGG 1 cut(s) 803
NdeII GATC 5 cut(s) 113, 604, 664, 747, 1091
NlaIII CATG 5 cut(s) 51, 467, 516, 847, 1102
NlaIV GGNNCC 2 cut(s) 199, 435
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 216, 579
NspI RCATGY 1 cut(s) 51
PciI ACATGT 1 cut(s) 47
PdmI GAANNNNTTC 3 cut(s) 481, 810, 900
PfeI GAWTC 4 cut(s) 477, 556, 786, 1103
PflFI GACNNNGTC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 227
PfoI TCCNGGA 2 cut(s) 607, 801
PkrI GCNGC 5 cut(s) 70, 191, 1023, 1150, 1189
PleI GAGTC 5 cut(s) 511, 586, 878, 1076, 1166
PpsI GAGTC 5 cut(s) 511, 586, 878, 1076, 1166
Ppu21I YACGTR 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 197
PscI ACATGT 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 796
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 4 cut(s) 220, 341, 607, 949
PspGI CCWGG 4 cut(s) 220, 341, 607, 949
PspN4I GGNNCC 2 cut(s) 199, 435
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 747
PsyI GACNNNGTC 1 cut(s) 352
RsaI GTAC 4 cut(s) 64, 435, 551, 980
RsaNI GTAC 4 cut(s) 63, 434, 550, 979
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 796
SaqAI TTAA 2 cut(s) 378, 524
SatI GCNGC 5 cut(s) 69, 190, 1022, 1149, 1188
Sau3AI GATC 5 cut(s) 113, 604, 664, 747, 1091
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 5 cut(s) 512, 587, 878, 1076, 1166
ScrFI CCNGG 5 cut(s) 222, 343, 609, 803, 951
SduI GDGCHC 3 cut(s) 283, 796, 858
SfaNI GCATC 4 cut(s) 328, 606, 619, 712
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 319, 752
SmoI CTYRAG 2 cut(s) 319, 752
Sse9I AATT 7 cut(s) 30, 311, 521, 537, 616, 773, 907
SsiI CCGC 7 cut(s) 69, 305, 668, 735, 1024, 1154, 1187
SspMI CTAG 4 cut(s) 633, 743, 1001, 1073
SstI GAGCTC 1 cut(s) 796
StyD4I CCNGG 5 cut(s) 220, 341, 607, 801, 949
TaaI ACNGT 4 cut(s) 760, 853, 914, 922
TaiI ACGT 3 cut(s) 448, 625, 869
TaqI TCGA 2 cut(s) 546, 960
TaqII GACCGA 1 cut(s) 652
TasI AATT 7 cut(s) 30, 311, 521, 537, 616, 773, 907
TatI WGTACW 2 cut(s) 549, 978
TauI GCSGC 2 cut(s) 71, 1190
TfiI GAWTC 4 cut(s) 477, 556, 786, 1103
Tru1I TTAA 2 cut(s) 378, 524
Tru9I TTAA 2 cut(s) 378, 524
TscAI CASTG 4 cut(s) 376, 475, 523, 588
TseFI GTSAC 2 cut(s) 216, 579
TseI GCWGC 3 cut(s) 189, 1021, 1148
Tsp45I GTSAC 2 cut(s) 216, 579
TspDTI ATGAA 2 cut(s) 17, 803
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 4 cut(s) 376, 475, 523, 588
Tth111I GACNNNGTC 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 1134
XapI RAATTY 1 cut(s) 30
XbaI TCTAGA 1 cut(s) 1000
XceI RCATGY 1 cut(s) 51
XmnI GAANNNNTTC 3 cut(s) 481, 810, 900
XspI CTAG 4 cut(s) 633, 743, 1001, 1073
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.