Component of the post-replicative DNA mismatch repair system (MMR)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18524 |
| fragaria_vesca | FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 |
| malus_domestica | MD06G1211200.v1.1 MD14G1221900.v1.1 |
| prunus_persica | Prupe.5G217300_v2.0.a1 Prupe.5G217300_v2.0.a1 |
| pyrus_communis | pycom06g18850 pycom14g18350 |
| rosa_chinensis | RchiOBHm_Chr7g0184631 |
| rosa_laevigata | RLG00000004964 |
| rosa_multiflora | Rmu_co8151106.1_g000001 Rmu_co8372741.1_g000001 Rmu_sc0009731.1_g000001 Rmu_sc0030268.1_g000001 Rmu_ssc0000289.1_g000029 |
| rosa_roxburghii | Rroxscaffold_3G00269470 |
| rosa_samantha | Rh7AG078900 Rh7BG068400 Rh7CG069200 Rh7DG068500 |
| rosa_wichuraiana | Rw7G005640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1351 |
| AccI | GTMKAC | 1 cut(s) | 2110 |
| AccII | CGCG | 3 cut(s) | 40, 60, 154 |
| AciI | CCGC | 6 cut(s) | 58, 60, 79, 426, 1351, 2659 |
| AclI | AACGTT | 1 cut(s) | 2228 |
| AclWI | GGATC | 5 cut(s) | 436, 927, 1289, 1302, 1887 |
| AcoI | YGGCCR | 1 cut(s) | 204 |
| AcsI | RAATTY | 7 cut(s) | 728, 893, 1153, 1335, 1672, 1847, 2143 |
| AcuI | CTGAAG | 1 cut(s) | 1655 |
| AcvI | CACGTG | 1 cut(s) | 485 |
| AdeI | CACNNNGTG | 1 cut(s) | 992 |
| AfaI | GTAC | 7 cut(s) | 397, 714, 1189, 1278, 1595, 1741, 2678 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1488, 2084, 2213 |
| AflIII | ACRYGT | 3 cut(s) | 482, 709, 1218 |
| AjnI | CCWGG | 5 cut(s) | 571, 988, 1125, 1821, 2689 |
| Alw21I | GWGCWC | 5 cut(s) | 249, 1662, 2505, 2641, 2862 |
| Alw26I | GTCTC | 4 cut(s) | 75, 467, 2384, 2930 |
| Alw44I | GTGCAC | 1 cut(s) | 2637 |
| AlwI | GGATC | 5 cut(s) | 436, 927, 1289, 1302, 1887 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1327, 2959 |
| Ama87I | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| AoxI | GGCC | 7 cut(s) | 6, 61, 204, 436, 2060, 2449, 2490 |
| ApaLI | GTGCAC | 1 cut(s) | 2637 |
| ApeKI | GCWGC | 7 cut(s) | 1103, 1321, 1390, 1559, 2777, 2888, 3002 |
| ApoI | RAATTY | 7 cut(s) | 728, 893, 1153, 1335, 1672, 1847, 2143 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 795, 954 |
| AspLEI | GCGC | 4 cut(s) | 42, 154, 646, 2899 |
| AspS9I | GGNCC | 4 cut(s) | 62, 226, 2204, 2490 |
| AsuC2I | CCSGG | 1 cut(s) | 2453 |
| AsuHPI | GGTGA | 5 cut(s) | 371, 568, 2152, 2354, 2882 |
| AsuNHI | GCTAGC | 1 cut(s) | 2297 |
| AvaI | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| AvaII | GGWCC | 2 cut(s) | 226, 2204 |
| BaeGI | GKGCMC | 3 cut(s) | 1117, 1447, 2641 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 379, 412, 618, 651 |
| BamHI | GGATCC | 1 cut(s) | 1294 |
| BanII | GRGCYC | 1 cut(s) | 249 |
| BbrPI | CACGTG | 1 cut(s) | 485 |
| BbsI | GAAGAC | 1 cut(s) | 893 |
| Bbv12I | GWGCWC | 5 cut(s) | 249, 1662, 2505, 2641, 2862 |
| BbvI | GCAGC | 7 cut(s) | 1090, 1333, 1402, 1546, 2764, 2875, 3014 |
| BccI | CCATC | 5 cut(s) | 1454, 1832, 2254, 2465, 2935 |
| BceAI | ACGGC | 1 cut(s) | 428 |
| BciT130I | CCWGG | 5 cut(s) | 573, 990, 1127, 1823, 2691 |
| BciVI | GTATCC | 1 cut(s) | 619 |
| BclI | TGATCA | 2 cut(s) | 1573, 2701 |
| BcnI | CCSGG | 1 cut(s) | 2453 |
| BcoDI | GTCTC | 4 cut(s) | 75, 467, 2384, 2930 |
| BfmI | CTRYAG | 4 cut(s) | 1980, 2415, 2805, 2826 |
| BfuI | GTATCC | 1 cut(s) | 619 |
| Bme1390I | CCNGG | 6 cut(s) | 573, 990, 1127, 1823, 2453, 2691 |
| Bme18I | GGWCC | 2 cut(s) | 226, 2204 |
| BmeT110I | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| BmgT120I | GGNCC | 4 cut(s) | 62, 226, 2204, 2490 |
| BmiI | GGNNCC | 8 cut(s) | 18, 64, 943, 1296, 1500, 2189, 2206, 3020 |
| BmrFI | CCNGG | 6 cut(s) | 573, 990, 1127, 1823, 2453, 2691 |
| BmrI | ACTGGG | 3 cut(s) | 626, 860, 2146 |
| BmtI | GCTAGC | 1 cut(s) | 2301 |
| BmuI | ACTGGG | 3 cut(s) | 626, 860, 2146 |
| BpiI | GAAGAC | 1 cut(s) | 893 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2780, 2812, 2849, 2881 |
| BpmI | CTGGAG | 3 cut(s) | 2807, 2930, 3005 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2130 |
| BpuEI | CTTGAG | 8 cut(s) | 233, 255, 526, 539, 1388, 1526, 1601, 2408 |
| BpuMI | CCSGG | 1 cut(s) | 2453 |
| BsaAI | YACGTR | 2 cut(s) | 485, 2357 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1701, 1884 |
| BsaJI | CCNNGG | 6 cut(s) | 58, 207, 580, 1482, 2452, 2690 |
| BsaWI | WCCGGW | 1 cut(s) | 2077 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1488, 2084, 2213 |
| Bse1I | ACTGG | 8 cut(s) | 444, 501, 632, 855, 953, 2063, 2141, 2790 |
| Bse3DI | GCAATG | 3 cut(s) | 836, 1004, 1542 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1701, 1884 |
| BseBI | CCWGG | 5 cut(s) | 573, 990, 1127, 1823, 2691 |
| BseDI | CCNNGG | 6 cut(s) | 58, 207, 580, 1482, 2452, 2690 |
| BseGI | GGATG | 8 cut(s) | 217, 1249, 1843, 2011, 2086, 2113, 2989, 3004 |
| BseJI | GATNNNNATC | 2 cut(s) | 1701, 1884 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1488, 2084, 2213 |
| BseMI | GCAATG | 3 cut(s) | 836, 1004, 1542 |
| BseMII | CTCAG | 4 cut(s) | 867, 1956, 2144, 2307 |
| BseNI | ACTGG | 8 cut(s) | 444, 501, 632, 855, 953, 2063, 2141, 2790 |
| BseRI | GAGGAG | 2 cut(s) | 171, 2927 |
| BseSI | GKGCMC | 3 cut(s) | 1117, 1447, 2641 |
| BseXI | GCAGC | 7 cut(s) | 1090, 1333, 1402, 1546, 2764, 2875, 3014 |
| BseYI | CCCAGC | 2 cut(s) | 1618, 1985 |
| BsgI | GTGCAG | 3 cut(s) | 1199, 1284, 1614 |
| Bsh1236I | CGCG | 3 cut(s) | 40, 60, 154 |
| BshFI | GGCC | 7 cut(s) | 8, 63, 206, 438, 2062, 2451, 2492 |
| BsiHKAI | GWGCWC | 5 cut(s) | 249, 1662, 2505, 2641, 2862 |
| BsiHKCI | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| BsiSI | CCGG | 2 cut(s) | 2078, 2452 |
| BslFI | GGGAC | 3 cut(s) | 353, 2190, 2470 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1488, 2084, 2213 |
| BsmAI | GTCTC | 4 cut(s) | 75, 467, 2384, 2930 |
| BsmBI | CGTCTC | 2 cut(s) | 75, 2930 |
| BsmFI | GGGAC | 3 cut(s) | 353, 2190, 2470 |
| BsmI | GAATGC | 2 cut(s) | 797, 1059 |
| BsnI | GGCC | 7 cut(s) | 8, 63, 206, 438, 2062, 2451, 2492 |
| BsoBI | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| Bsp1286I | GDGCHC | 7 cut(s) | 249, 1117, 1447, 1662, 2505, 2641, 2862 |
| Bsp1407I | TGTACA | 1 cut(s) | 2676 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 6 cut(s) | 58, 60, 79, 426, 1351, 2659 |
| BspANI | GGCC | 7 cut(s) | 8, 63, 206, 438, 2062, 2451, 2492 |
| BspCNI | CTCAG | 4 cut(s) | 868, 1957, 2143, 2306 |
| BspFNI | CGCG | 3 cut(s) | 40, 60, 154 |
| BspHI | TCATGA | 2 cut(s) | 2551, 2572 |
| BspLI | GGNNCC | 8 cut(s) | 18, 64, 943, 1296, 1500, 2189, 2206, 3020 |
| BspOI | GCTAGC | 1 cut(s) | 2301 |
| BspPI | GGATC | 5 cut(s) | 436, 927, 1289, 1302, 1887 |
| BspQI | GCTCTTC | 2 cut(s) | 1635, 1773 |
| BsrBI | CCGCTC | 1 cut(s) | 1351 |
| BsrDI | GCAATG | 3 cut(s) | 836, 1004, 1542 |
| BsrGI | TGTACA | 1 cut(s) | 2676 |
| BsrI | ACTGG | 8 cut(s) | 444, 501, 632, 855, 953, 2063, 2141, 2790 |
| BssECI | CCNNGG | 6 cut(s) | 58, 207, 580, 1482, 2452, 2690 |
| BssT1I | CCWWGG | 3 cut(s) | 207, 580, 1482 |
| Bst2UI | CCWGG | 5 cut(s) | 573, 990, 1127, 1823, 2691 |
| Bst4CI | ACNGT | 5 cut(s) | 395, 679, 1467, 1626, 2809 |
| Bst6I | CTCTTC | 5 cut(s) | 1477, 1635, 1773, 1896, 2826 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 792, 992, 1628, 2383, 2732, 2959 |
| BstAUI | TGTACA | 1 cut(s) | 2676 |
| BstBAI | YACGTR | 2 cut(s) | 485, 2357 |
| BstC8I | GCNNGC | 4 cut(s) | 58, 236, 2299, 2955 |
| BstDEI | CTNAG | 7 cut(s) | 876, 923, 1711, 1965, 2015, 2130, 2293 |
| BstDSI | CCRYGG | 2 cut(s) | 58, 207 |
| BstF5I | GGATG | 8 cut(s) | 217, 1249, 1843, 2011, 2086, 2113, 2989, 3004 |
| BstFNI | CGCG | 3 cut(s) | 40, 60, 154 |
| BstHHI | GCGC | 4 cut(s) | 42, 154, 646, 2899 |
| BstMAI | GTCTC | 4 cut(s) | 75, 467, 2384, 2930 |
| BstNI | CCWGG | 5 cut(s) | 573, 990, 1127, 1823, 2691 |
| BstNSI | RCATGY | 2 cut(s) | 1222, 1757 |
| BstSCI | CCNGG | 6 cut(s) | 571, 988, 1125, 1821, 2451, 2689 |
| BstSFI | CTRYAG | 4 cut(s) | 1980, 2415, 2805, 2826 |
| BstSLI | GKGCMC | 3 cut(s) | 1117, 1447, 2641 |
| BstUI | CGCG | 3 cut(s) | 40, 60, 154 |
| BstV1I | GCAGC | 7 cut(s) | 1090, 1333, 1402, 1546, 2764, 2875, 3014 |
| BstV2I | GAAGAC | 1 cut(s) | 893 |
| BstX2I | RGATCY | 3 cut(s) | 428, 919, 1294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2357 |
| BstYI | RGATCY | 3 cut(s) | 428, 919, 1294 |
| BsuI | GTATCC | 1 cut(s) | 619 |
| BsuRI | GGCC | 7 cut(s) | 8, 63, 206, 438, 2062, 2451, 2492 |
| BtgI | CCRYGG | 2 cut(s) | 58, 207 |
| BtgZI | GCGATG | 1 cut(s) | 361 |
| BtsCI | GGATG | 8 cut(s) | 217, 1249, 1843, 2011, 2086, 2113, 2989, 3004 |
| BtsI | GCAGTG | 1 cut(s) | 402 |
| BtsIMutI | CAGTG | 7 cut(s) | 402, 451, 639, 848, 1475, 1622, 1631 |
| Cac8I | GCNNGC | 4 cut(s) | 58, 236, 2299, 2955 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1327, 2959 |
| CciI | TCATGA | 2 cut(s) | 2551, 2572 |
| CfoI | GCGC | 4 cut(s) | 42, 154, 646, 2899 |
| Cfr13I | GGNCC | 4 cut(s) | 62, 226, 2204, 2490 |
| Cfr42I | CCGCGG | 1 cut(s) | 61 |
| CsiI | ACCWGGT | 1 cut(s) | 988 |
| Csp6I | GTAC | 7 cut(s) | 396, 713, 1188, 1277, 1594, 1740, 2677 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 11, 46, 2197, 2232 |
| CviQI | GTAC | 7 cut(s) | 396, 713, 1188, 1277, 1594, 1740, 2677 |
| DdeI | CTNAG | 7 cut(s) | 876, 923, 1711, 1965, 2015, 2130, 2293 |
| DraI | TTTAAA | 1 cut(s) | 1725 |
| DraIII | CACNNNGTG | 1 cut(s) | 992 |
| EaeI | YGGCCR | 1 cut(s) | 204 |
| Eam1104I | CTCTTC | 5 cut(s) | 1477, 1635, 1773, 1896, 2826 |
| EarI | CTCTTC | 5 cut(s) | 1477, 1635, 1773, 1896, 2826 |
| Ecl136II | GAGCTC | 1 cut(s) | 247 |
| Eco130I | CCWWGG | 3 cut(s) | 207, 580, 1482 |
| Eco24I | GRGCYC | 1 cut(s) | 249 |
| Eco32I | GATATC | 1 cut(s) | 1602 |
| Eco47I | GGWCC | 2 cut(s) | 226, 2204 |
| Eco53kI | GAGCTC | 1 cut(s) | 247 |
| Eco57I | CTGAAG | 1 cut(s) | 1655 |
| Eco72I | CACGTG | 1 cut(s) | 485 |
| Eco88I | CYCGRG | 5 cut(s) | 242, 1261, 2328, 2766, 2892 |
| EcoICRI | GAGCTC | 1 cut(s) | 247 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2204 |
| EcoRII | CCWGG | 5 cut(s) | 571, 988, 1125, 1821, 2689 |
| EcoRV | GATATC | 1 cut(s) | 1602 |
| EcoT14I | CCWWGG | 3 cut(s) | 207, 580, 1482 |
| EcoT38I | GRGCYC | 1 cut(s) | 249 |
| ErhI | CCWWGG | 3 cut(s) | 207, 580, 1482 |
| Esp3I | CGTCTC | 2 cut(s) | 75, 2930 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2370, 2402 |
| FaqI | GGGAC | 3 cut(s) | 353, 2190, 2470 |
| FauI | CCCGC | 2 cut(s) | 65, 86 |
| FbaI | TGATCA | 2 cut(s) | 1573, 2701 |
| FblI | GTMKAC | 1 cut(s) | 2110 |
| FokI | GGATG | 8 cut(s) | 224, 1256, 1850, 2018, 2093, 2100, 2996, 3011 |
| FriOI | GRGCYC | 1 cut(s) | 249 |
| GlaI | GCGC | 4 cut(s) | 41, 153, 645, 2898 |
| GsaI | CCCAGC | 2 cut(s) | 1622, 1989 |
| GsuI | CTGGAG | 3 cut(s) | 2807, 2930, 3005 |
| HaeIII | GGCC | 7 cut(s) | 8, 63, 206, 438, 2062, 2451, 2492 |
| HapII | CCGG | 2 cut(s) | 2078, 2452 |
| HhaI | GCGC | 4 cut(s) | 42, 154, 646, 2899 |
| Hin6I | GCGC | 4 cut(s) | 40, 152, 644, 2897 |
| HinP1I | GCGC | 4 cut(s) | 40, 152, 644, 2897 |
| HincII | GTYRAC | 4 cut(s) | 873, 1567, 1933, 2667 |
| HindII | GTYRAC | 4 cut(s) | 873, 1567, 1933, 2667 |
| HindIII | AAGCTT | 2 cut(s) | 236, 1862 |
| HpaI | GTTAAC | 2 cut(s) | 873, 1933 |
| HpaII | CCGG | 2 cut(s) | 2078, 2452 |
| HphI | GGTGA | 5 cut(s) | 371, 568, 2152, 2354, 2882 |
| Hpy166II | GTNNAC | 9 cut(s) | 713, 873, 1567, 1742, 1933, 2111, 2165, 2639, 2667 |
| Hpy8I | GTNNAC | 9 cut(s) | 713, 873, 1567, 1742, 1933, 2111, 2165, 2639, 2667 |
| Hpy99I | CGWCG | 1 cut(s) | 339 |
| HpyAV | CCTTC | 8 cut(s) | 19, 806, 1630, 1768, 2078, 2096, 2974, 2989 |
| HpyCH4III | ACNGT | 5 cut(s) | 395, 679, 1467, 1626, 2809 |
| HpyCH4IV | ACGT | 4 cut(s) | 484, 709, 2228, 2356 |
| HpyF3I | CTNAG | 7 cut(s) | 876, 923, 1711, 1965, 2015, 2130, 2293 |
| HpySE526I | ACGT | 4 cut(s) | 484, 709, 2228, 2356 |
| HspAI | GCGC | 4 cut(s) | 40, 152, 644, 2897 |
| Ksp22I | TGATCA | 2 cut(s) | 1573, 2701 |
| KspAI | GTTAAC | 2 cut(s) | 873, 1933 |
| KspI | CCGCGG | 1 cut(s) | 61 |
| LguI | GCTCTTC | 2 cut(s) | 1635, 1773 |
| LmnI | GCTCC | 7 cut(s) | 158, 947, 1657, 2336, 2411, 2885, 3024 |
| Lsp1109I | GCAGC | 7 cut(s) | 1090, 1333, 1402, 1546, 2764, 2875, 3014 |
| MabI | ACCWGGT | 1 cut(s) | 988 |
| MaeII | ACGT | 4 cut(s) | 484, 709, 2228, 2356 |
| MaeIII | GTNAC | 5 cut(s) | 743, 2288, 2342, 2424, 2809 |
| MbiI | CCGCTC | 1 cut(s) | 1351 |
| MflI | RGATCY | 3 cut(s) | 428, 919, 1294 |
| MhlI | GDGCHC | 7 cut(s) | 249, 1117, 1447, 1662, 2505, 2641, 2862 |
| MlyI | GAGTC | 4 cut(s) | 1658, 2285, 2642, 2858 |
| MmeI | TCCRAC | 4 cut(s) | 155, 527, 1635, 2260 |
| MroXI | GAANNNNTTC | 2 cut(s) | 795, 954 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2118, 2550, 2577, 2597, 2634 |
| MspA1I | CMGCKG | 1 cut(s) | 60 |
| MspI | CCGG | 2 cut(s) | 2078, 2452 |
| MspR9I | CCNGG | 6 cut(s) | 573, 990, 1127, 1823, 2453, 2691 |
| Mva1269I | GAATGC | 2 cut(s) | 797, 1059 |
| MvaI | CCWGG | 5 cut(s) | 573, 990, 1127, 1823, 2691 |
| MvnI | CGCG | 3 cut(s) | 40, 60, 154 |
| NciI | CCSGG | 1 cut(s) | 2453 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NheI | GCTAGC | 1 cut(s) | 2297 |
| NlaIV | GGNNCC | 8 cut(s) | 18, 64, 943, 1296, 1500, 2189, 2206, 3020 |
| NmuCI | GTSAC | 5 cut(s) | 743, 2288, 2342, 2424, 2809 |
| NspI | RCATGY | 2 cut(s) | 1222, 1757 |
| PaeR7I | CTCGAG | 2 cut(s) | 1261, 2766 |
| PagI | TCATGA | 2 cut(s) | 2551, 2572 |
| PciI | ACATGT | 1 cut(s) | 1218 |
| PciSI | GCTCTTC | 2 cut(s) | 1635, 1773 |
| PctI | GAATGC | 2 cut(s) | 797, 1059 |
| PdmI | GAANNNNTTC | 2 cut(s) | 795, 954 |
| PfeI | GAWTC | 6 cut(s) | 200, 308, 761, 1097, 1764, 2475 |
| PfoI | TCCNGGA | 2 cut(s) | 1125, 1821 |
| PleI | GAGTC | 4 cut(s) | 1657, 2285, 2642, 2858 |
| PmaCI | CACGTG | 1 cut(s) | 485 |
| PmlI | CACGTG | 1 cut(s) | 485 |
| PpsI | GAGTC | 4 cut(s) | 1657, 2285, 2642, 2858 |
| Ppu21I | YACGTR | 2 cut(s) | 485, 2357 |
| PpuMI | RGGWCCY | 1 cut(s) | 2204 |
| PscI | ACATGT | 1 cut(s) | 1218 |
| Psp124BI | GAGCTC | 1 cut(s) | 249 |
| Psp1406I | AACGTT | 1 cut(s) | 2228 |
| Psp5II | RGGWCCY | 1 cut(s) | 2204 |
| Psp6I | CCWGG | 5 cut(s) | 571, 988, 1125, 1821, 2689 |
| PspCI | CACGTG | 1 cut(s) | 485 |
| PspFI | CCCAGC | 2 cut(s) | 1618, 1985 |
| PspGI | CCWGG | 5 cut(s) | 571, 988, 1125, 1821, 2689 |
| PspN4I | GGNNCC | 8 cut(s) | 18, 64, 943, 1296, 1500, 2189, 2206, 3020 |
| PspPI | GGNCC | 4 cut(s) | 62, 226, 2204, 2490 |
| PspPPI | RGGWCCY | 1 cut(s) | 2204 |
| PspXI | VCTCGAGB | 1 cut(s) | 1261 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1327, 2959 |
| PsuI | RGATCY | 3 cut(s) | 428, 919, 1294 |
| RsaI | GTAC | 7 cut(s) | 397, 714, 1189, 1278, 1595, 1741, 2678 |
| RsaNI | GTAC | 7 cut(s) | 396, 713, 1188, 1277, 1594, 1740, 2677 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2118, 2550, 2577, 2597, 2634 |
| SacI | GAGCTC | 1 cut(s) | 249 |
| SacII | CCGCGG | 1 cut(s) | 61 |
| SapI | GCTCTTC | 2 cut(s) | 1635, 1773 |
| Sau96I | GGNCC | 4 cut(s) | 62, 226, 2204, 2490 |
| SchI | GAGTC | 4 cut(s) | 1658, 2285, 2642, 2858 |
| ScrFI | CCNGG | 6 cut(s) | 573, 990, 1127, 1823, 2453, 2691 |
| SduI | GDGCHC | 7 cut(s) | 249, 1117, 1447, 1662, 2505, 2641, 2862 |
| SexAI | ACCWGGT | 1 cut(s) | 988 |
| SfcI | CTRYAG | 4 cut(s) | 1980, 2415, 2805, 2826 |
| Sfr274I | CTCGAG | 2 cut(s) | 1261, 2766 |
| Sfr303I | CCGCGG | 1 cut(s) | 61 |
| SgrBI | CCGCGG | 1 cut(s) | 61 |
| SinI | GGWCC | 2 cut(s) | 226, 2204 |
| SlaI | CTCGAG | 2 cut(s) | 1261, 2766 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2118, 2550, 2577, 2597, 2634 |
| SsiI | CCGC | 6 cut(s) | 58, 60, 79, 426, 1351, 2659 |
| SspI | AATATT | 1 cut(s) | 2254 |
| SstI | GAGCTC | 1 cut(s) | 249 |
| StyD4I | CCNGG | 6 cut(s) | 571, 988, 1125, 1821, 2451, 2689 |
| StyI | CCWWGG | 3 cut(s) | 207, 580, 1482 |
| TaaI | ACNGT | 5 cut(s) | 395, 679, 1467, 1626, 2809 |
| TaiI | ACGT | 4 cut(s) | 487, 712, 2231, 2359 |
| TaqI | TCGA | 6 cut(s) | 322, 958, 1262, 1347, 1701, 2767 |
| TatI | WGTACW | 4 cut(s) | 712, 1187, 1593, 2676 |
| TauI | GCSGC | 3 cut(s) | 63, 1354, 2661 |
| TfiI | GAWTC | 6 cut(s) | 200, 308, 761, 1097, 1764, 2475 |
| TscAI | CASTG | 7 cut(s) | 409, 451, 639, 855, 1482, 1629, 1638 |
| TseFI | GTSAC | 5 cut(s) | 743, 2288, 2342, 2424, 2809 |
| TseI | GCWGC | 7 cut(s) | 1103, 1321, 1390, 1559, 2777, 2888, 3002 |
| Tsp45I | GTSAC | 5 cut(s) | 743, 2288, 2342, 2424, 2809 |
| TspGWI | ACGGA | 1 cut(s) | 1807 |
| TspRI | CASTG | 7 cut(s) | 409, 451, 639, 855, 1482, 1629, 1638 |
| VneI | GTGCAC | 1 cut(s) | 2637 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 2204 |
| XapI | RAATTY | 7 cut(s) | 728, 893, 1153, 1335, 1672, 1847, 2143 |
| XbaI | TCTAGA | 1 cut(s) | 805 |
| XceI | RCATGY | 2 cut(s) | 1222, 1757 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 27 |
| XhoI | CTCGAG | 2 cut(s) | 1261, 2766 |
| XmiI | GTMKAC | 1 cut(s) | 2110 |
| XmnI | GAANNNNTTC | 2 cut(s) | 795, 954 |