Rh7BG068400

Component of the post-replicative DNA mismatch repair system (MMR)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006881
Physical Location & Seq
Forward (+)
4547789 .. 4554375
6587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG068400.1

Sequence Viewer

Length: 2829 bp
ATGGATCCCAATTTCGAGGACCAGAGCAAGCTTCCGGAGCTTAAATTAGATGCCAAGCAATCTCAAGGGTTTTTGTCATTCTTCAAAACCCTCCCCCATGACACAAGAGCTATTCGATTGTTTGATCGTCGGGACTACTATACTGCTCATGGTGAAAATGCTACTTTCATTGCAAAGACCTATTATCGTACCACCACTGCTCTGCGACAACTGGGTAGCGGATCTGATGGCCTATCCAGTGTGAGTGTTAGTAAGAACATGTTTGAAACAATTGCCCGTGATCTTCTACTGGAAAGAACAGACCATACTCTTGAGATTTATGAGGGTAGTGGCTCAAGTTGGAGACTTGTGAAAAGTGGAACGCCTGGAAATCTTGGAAGTTTTGAAGATGTATTATTTGCGAACAATGAGATGCAGGATACCCCCGTGGTTGTTGCACTATTACCTAACTTCCGTGAAAATGGTTGTACAGTGGGGTTAGGATATGTTGATCTAACTAAACGAGCACTTGGGTTAGCTGAATTTCTTGATGATAGCCACTTCACAAATTTGGAATCAGCTTTAGTTGCACTTGGTTGCAAGGAATGCCTTCTGCCCGTAGAGAGTGGGAAAACCGGTGAAATCAGAGCGTTACATGATGCATTGACTCGATGTGGTGTGATGTTAACTGAGAGAAAAAAGAGTGAATTTAAGATGAGGGATTTGGTTCAGGATCTCAGTCGGCTTGTCAAAGGAACTATTGAACCAGTTCGAGATTTAGTTTCTGGATTTGAGTTTGCACCTGGTGCATTGGGGGCATTGCTCTCTTATGCAGAACTACTTGCTGATGAGAGCAATTATGGAAACTATAACATCCAAAGATATAATCTTGATAACTATATGAGGTTGGATTCTGCTGCTATGAGGGCACTTAATATCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTTCTGAATAGAACCTGTACTGCTGGAATGGGTAAACGATTACTGCACATGTGGCTAAAACAGCCTTTGTTAGAAGTACAGGAAATCAATTCCAGGTTAGATTTGGTACAGACATTTGTGGAGGATCCTGCGCTTCGCCAAGATTTGAGGCAGCATCTGAAACGAATCTCAGACATTGAACGACTGGTGCACAATCTTGAGAAGAAAAGAGCTGGTTTGCAGCATGTTGTAAAACTTTATCAGTCATGTATAAGGCTTCCATACATCAAAAGCGCCCTAGAGCGGTATGATGGAGAGTTTTCCTTGCTGATCAAGGAAAAGTATTCGGATCCCTTTGCATTATGGACTGATGATGGCCACTTAAATAAGTTTCTTGCTCTAGTGGAAGCTGCTGTTGACCTTGATCAACTCGAGAATGGAGAGTACATGATAGCGTCTAGTTATGATCCTGCTCTTTCTGCACTAAAGAATGAGCAAGAGTCGCTGGCTCAGCAGATACACAATTTGCATAAACAAACTGCTAAGGATCTTGATCTCTCTATAGATAAGGCCTTAAAGTTAGATAAAGGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAAAAGCTCACAACACAATTCATTGTCCTGGAAACCCGAAAAGATGGAGTGAAATTCACTAATACTAAGCTTAAAAAGTTAGGGGATCAATATCAGAGAATACTTGAAGAGTATAAAAATTGTCAGAAAGAACTGGTGAACCGAGTTGTTCACACTGCATCCACTTTCTCAGAGGTGTTCTGTAATGTAGCTGGCTTGCTTTCTGAATTGGACGTGTTACTTAGTTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCTTATACTAGGCCACTCATCACTCCATCGGATGTGGGGGATATTATACTAGAAGGGAGTAGACATCCTTGTGTGGAGGCTCAGGACTGGGTTAATTTTATACCCAATGATTGTAAACTTGTAAGAGGAAAGAGTTGGTTCCAAATCATTACAGGGCCTAATATGGGTGGAAAATCCACGTTTATCCGGCAGGTTGGTGTGATTATTCTAATGGCACAAGTTGGTTCTTTTGTTCCTTGTGAGAAGGCTACCATTTCTATTCGTGATTGCATTTTTGCTCGAGTGGGTGCTGGTGATTGCCAACTACGTGGTGTTTCTACCTTTATGCAAGAAATGCTTGAGACTGCATCTATACTGAAAGGATCTACAGATAAGTCACTGATAATCATCGACGAGTTAGGCCGAGGGACATCAACTTATGATGGATTTGGTTTGGCTTGGGCCATTTGCGAGCACCTTGTTGAAGTGATTAATGCACCTACTTTGTTTGCAACCCACTTTCATGAATTGACCGCATTAGCTCAAGAAAATGCTGTTCATGAGCCTAATATGAAGCAAATTGTTGGTGTTGCGAACTATCATGTTAGTGCACATATTGACTCATCAAGCCGCAAGTTGACTATGCTGTACAAGGTTGAGCCAGGGGCATGTGATCAAAGTTTCGGTATCCAGGTTGCAGAATTTGCAAACTTTCCTGAAAGTGTTGTCGCCCTTGCTAGAGAAAAGGCTGCTGAATTGGAGGATTTCACTCCTACTGCCGTCATTCCAAATGATGCTAGAGAAGAGGTTGGATCCAAGCGCAAGAGAGAGTATGATTCTGATGACATGTCCAGAGGAGCAGCTCGTGCGCGCAAGTTTTTGAAGGAGTTCTCTGAAATGCCATTAGATACAATGGATGTACAGCAGGCTTTGCAAATAGTTAACAAAATGAAGGATGACTTGCAAACGGAGGCAGTAAACAGCCAATGGCTACAACAGTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

942

Amino Acids

105.73

Weight (kDa)

5.82

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_I PF01624 23 - 128 1.3e-16 MutS domain I
MutS_II PF05188 152 - 282 7.4e-15 MutS domain II
MutS_III PF05192 299 - 606 6e-39 MutS domain III
MutS_IV PF05190 469 - 565 2.3e-19 MutS family domain IV
MutS_V PF00488 662 - 861 9e-79 MutS domain V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2023
AccBSI CCGCTC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 1903
AccII CGCG 1 cut(s) 2692
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 4 cut(s) 219, 1246, 2355, 2452
AcoI YGGCCR 1 cut(s) 1318
AcsI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2522
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 8 cut(s) 190, 469, 982, 1041, 1071, 1388, 2471, 2742
AfiI CCNNNNNNNGG 2 cut(s) 1245, 2006
AflIII ACRYGT 5 cut(s) 258, 1011, 1546, 1800, 2667
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 8 cut(s) 85, 266, 386, 743, 1142, 1694, 2306, 2704
AjiI CACGTC 1 cut(s) 1801
AjnI CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
Alw21I GWGCWC 4 cut(s) 508, 1155, 2298, 2434
Alw26I GTCTC 2 cut(s) 337, 2177
Alw44I GTGCAC 2 cut(s) 1151, 2430
AlwNI CAGNNNCTG 1 cut(s) 1120
Ama87I CYCGRG 2 cut(s) 1373, 2121
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 7 cut(s) 229, 1318, 1512, 1853, 1997, 2242, 2283
ApaLI GTGCAC 2 cut(s) 1151, 2430
ApeKI GCWGC 6 cut(s) 896, 1114, 1183, 1352, 2570, 2681
ApoI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2522
AseI ATTAAT 1 cut(s) 2313
AsiGI ACCGGT 1 cut(s) 614
Asp700I GAANNNNTTC 3 cut(s) 588, 747, 2708
AspLEI GCGC 5 cut(s) 1096, 1238, 2643, 2692, 2694
AspS9I GGNCC 3 cut(s) 19, 1997, 2283
AsuHPI GGTGA 4 cut(s) 164, 629, 1735, 2147
AvaI CYCGRG 2 cut(s) 1373, 2121
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 3 cut(s) 910, 1155, 2434
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BalI TGGCCA 1 cut(s) 1320
BamHI GGATCC 4 cut(s) 4, 1087, 1291, 2633
BauI CACGAG 1 cut(s) 2685
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 4 cut(s) 508, 1155, 2298, 2434
BbvI GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2557, 2693
BccI CCATC 6 cut(s) 221, 1247, 1310, 1625, 1876, 2258
BceAI ACGGC 1 cut(s) 2585
BciT130I CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
BciVI GTATCC 2 cut(s) 412, 2519
BclI TGATCA 3 cut(s) 1272, 1366, 2494
BcoDI GTCTC 2 cut(s) 337, 2177
BfaI CTAG 9 cut(s) 1241, 1343, 1401, 1830, 1851, 1892, 2559, 2619, 2827
BfmI CTRYAG 2 cut(s) 1503, 2208
BfoI RGCGCY 1 cut(s) 1239
BfuAI ACCTGC 1 cut(s) 2023
BfuI GTATCC 2 cut(s) 412, 2519
BisI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2452, 2571, 2682
BlpI GCTNAGC 1 cut(s) 1452
BlsI GCNGC 7 cut(s) 898, 1116, 1185, 1354, 2453, 2572, 2683
Bme1390I CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 2 cut(s) 1373, 2121
BmgBI CACGTC 1 cut(s) 1801
BmgT120I GGNCC 3 cut(s) 19, 1997, 2283
BmiI GGNNCC 5 cut(s) 6, 1089, 1293, 1982, 2635
BmrFI CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
BmrI ACTGGG 2 cut(s) 221, 1939
BmsI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2198, 2605
BmuI ACTGGG 2 cut(s) 221, 1939
BpiI GAAGAC 1 cut(s) 956
Bpu10I CCTNAGC 2 cut(s) 1485, 1923
Bpu1102I GCTNAGC 1 cut(s) 1452
BpuEI CTTGAG 6 cut(s) 48, 319, 332, 1181, 2201, 2349
BsaAI YACGTR 1 cut(s) 2150
BsaBI GATNNNNATC 3 cut(s) 1494, 1677, 2228
BsaJI CCNNGG 3 cut(s) 426, 2245, 2483
BsaWI WCCGGW 2 cut(s) 34, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 1245, 2006
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 7 cut(s) 216, 237, 294, 746, 1152, 1725, 1934
Bse3DI GCAATG 2 cut(s) 168, 797
Bse8I GATNNNNATC 3 cut(s) 1494, 1677, 2228
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
BseDI CCNNGG 3 cut(s) 426, 2245, 2483
BseGI GGATG 6 cut(s) 852, 1745, 1879, 1906, 2743, 2782
BseJI GATNNNNATC 3 cut(s) 1494, 1677, 2228
BseLI CCNNNNNNNGG 2 cut(s) 1245, 2006
BseMI GCAATG 2 cut(s) 168, 797
BseMII CTCAG 6 cut(s) 660, 730, 1146, 1466, 1770, 1937
BseNI ACTGG 7 cut(s) 216, 237, 294, 746, 1152, 1725, 1934
BsePI GCGCGC 1 cut(s) 2690
BseRI GAGGAG 1 cut(s) 2691
BseSI GKGCMC 3 cut(s) 910, 1155, 2434
BseXI GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2557, 2693
BsgI GTGCAG 2 cut(s) 992, 1407
Bsh1236I CGCG 1 cut(s) 2692
BshFI GGCC 7 cut(s) 231, 1320, 1514, 1855, 1999, 2244, 2285
BshTI ACCGGT 1 cut(s) 614
BsiHKAI GWGCWC 4 cut(s) 508, 1155, 2298, 2434
BsiHKCI CYCGRG 2 cut(s) 1373, 2121
BsiSI CCGG 3 cut(s) 35, 615, 2029
BslFI GGGAC 2 cut(s) 146, 2263
BslI CCNNNNNNNGG 2 cut(s) 1245, 2006
BsmAI GTCTC 2 cut(s) 337, 2177
BsmFI GGGAC 2 cut(s) 146, 2263
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 7 cut(s) 231, 1320, 1514, 1855, 1999, 2244, 2285
BsoBI CYCGRG 2 cut(s) 1373, 2121
Bsp1286I GDGCHC 5 cut(s) 508, 910, 1155, 2298, 2434
Bsp13I TCCGGA 1 cut(s) 34
Bsp1407I TGTACA 3 cut(s) 467, 2469, 2740
Bsp1720I GCTNAGC 1 cut(s) 1452
BspACI CCGC 4 cut(s) 219, 1246, 2355, 2452
BspANI GGCC 7 cut(s) 231, 1320, 1514, 1855, 1999, 2244, 2285
BspCNI CTCAG 6 cut(s) 661, 729, 1145, 1465, 1769, 1936
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 1 cut(s) 2692
BspHI TCATGA 2 cut(s) 2344, 2380
BspLI GGNNCC 5 cut(s) 6, 1089, 1293, 1982, 2635
BspMI ACCTGC 1 cut(s) 2023
BspQI GCTCTTC 1 cut(s) 1566
BsrBI CCGCTC 1 cut(s) 1246
BsrDI GCAATG 2 cut(s) 168, 797
BsrFI RCCGGY 1 cut(s) 614
BsrGI TGTACA 3 cut(s) 467, 2469, 2740
BsrI ACTGG 7 cut(s) 216, 237, 294, 746, 1152, 1725, 1934
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 426, 2245, 2483
BssHII GCGCGC 1 cut(s) 2690
BssSI CACGAG 1 cut(s) 2685
Bst2BI CACGAG 1 cut(s) 2685
Bst2UI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
Bst4CI ACNGT 2 cut(s) 472, 2820
Bst6I CTCTTC 3 cut(s) 1566, 1689, 2619
BstAPI GCANNNNNTGC 6 cut(s) 585, 785, 2176, 2525, 2687, 2752
BstAUI TGTACA 3 cut(s) 467, 2469, 2740
BstBAI YACGTR 1 cut(s) 2150
BstC8I GCNNGC 7 cut(s) 29, 1449, 1780, 1784, 2294, 2692, 2748
BstDEI CTNAG 9 cut(s) 669, 716, 1132, 1452, 1485, 1653, 1756, 1808, 1923
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 6 cut(s) 852, 1745, 1879, 1906, 2743, 2782
BstFNI CGCG 1 cut(s) 2692
BstH2I RGCGCY 1 cut(s) 1239
BstHHI GCGC 5 cut(s) 1096, 1238, 2643, 2692, 2694
BstMAI GTCTC 2 cut(s) 337, 2177
BstNI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
BstNSI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2493, 2671
BstSCI CCNGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
BstSFI CTRYAG 2 cut(s) 1503, 2208
BstSLI GKGCMC 3 cut(s) 910, 1155, 2434
BstUI CGCG 1 cut(s) 2692
BstV1I GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2557, 2693
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 8 cut(s) 4, 221, 712, 1087, 1291, 1489, 2204, 2633
BstXI CCANNNNNNTGG 1 cut(s) 2150
BstYI RGATCY 8 cut(s) 4, 221, 712, 1087, 1291, 1489, 2204, 2633
BsuI GTATCC 2 cut(s) 412, 2519
BsuRI GGCC 7 cut(s) 231, 1320, 1514, 1855, 1999, 2244, 2285
BtgI CCRYGG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 1801
BtsCI GGATG 6 cut(s) 852, 1745, 1879, 1906, 2743, 2782
BtsI GCAGTG 2 cut(s) 195, 1740
BtsIMutI CAGTG 5 cut(s) 195, 244, 477, 1740, 2219
BveI ACCTGC 1 cut(s) 2023
Cac8I GCNNGC 7 cut(s) 29, 1449, 1780, 1784, 2294, 2692, 2748
CaiI CAGNNNCTG 1 cut(s) 1120
CciI TCATGA 2 cut(s) 2344, 2380
CfoI GCGC 5 cut(s) 1096, 1238, 2643, 2692, 2694
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 3 cut(s) 19, 1997, 2283
CseI GACGC 1 cut(s) 1386
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2470, 2741
CspAI ACCGGT 1 cut(s) 614
CviQI GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2470, 2741
DdeI CTNAG 9 cut(s) 669, 716, 1132, 1452, 1485, 1653, 1756, 1808, 1923
DraIII CACNNNGTG 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 1318
Eam1104I CTCTTC 3 cut(s) 1566, 1689, 2619
EarI CTCTTC 3 cut(s) 1566, 1689, 2619
Eco147I AGGCCT 1 cut(s) 1514
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 2 cut(s) 1373, 2121
EcoO109I RGGNCCY 1 cut(s) 1997
EcoRII CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
EcoT22I ATGCAT 1 cut(s) 643
FalI AAGNNNNNCTT 4 cut(s) 2163, 2195, 2765, 2797
FaqI GGGAC 2 cut(s) 146, 2263
FbaI TGATCA 3 cut(s) 1272, 1366, 2494
FblI GTMKAC 1 cut(s) 1903
Fnu4HI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2452, 2571, 2682
FokI GGATG 6 cut(s) 839, 1732, 1886, 1893, 2750, 2789
Fsp4HI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2452, 2571, 2682
FspBI CTAG 9 cut(s) 1241, 1343, 1401, 1830, 1851, 1892, 2559, 2619, 2827
GlaI GCGC 5 cut(s) 1095, 1237, 2642, 2691, 2693
GluI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2452, 2571, 2682
HaeII RGCGCY 1 cut(s) 1239
HaeIII GGCC 7 cut(s) 231, 1320, 1514, 1855, 1999, 2244, 2285
HapII CCGG 3 cut(s) 35, 615, 2029
HgaI GACGC 1 cut(s) 1386
HhaI GCGC 5 cut(s) 1096, 1238, 2643, 2692, 2694
Hin6I GCGC 5 cut(s) 1094, 1236, 2641, 2690, 2692
HinP1I GCGC 5 cut(s) 1094, 1236, 2641, 2690, 2692
HincII GTYRAC 4 cut(s) 666, 1360, 2460, 2764
HindII GTYRAC 4 cut(s) 666, 1360, 2460, 2764
HindIII AAGCTT 2 cut(s) 29, 1655
HinfI GANTC 8 cut(s) 554, 646, 890, 1128, 1442, 1557, 2441, 2657
HpaI GTTAAC 2 cut(s) 666, 2764
HpaII CCGG 3 cut(s) 35, 615, 2029
HphI GGTGA 4 cut(s) 164, 629, 1735, 2147
Hpy99I CGWCG 2 cut(s) 132, 2237
HpyAV CCTTC 6 cut(s) 599, 1561, 1889, 2080, 2698, 2767
HpyCH4III ACNGT 2 cut(s) 472, 2820
HpyCH4IV ACGT 3 cut(s) 1800, 2021, 2149
HpyF3I CTNAG 9 cut(s) 669, 716, 1132, 1452, 1485, 1653, 1756, 1808, 1923
HpySE526I ACGT 3 cut(s) 1800, 2021, 2149
HspAI GCGC 5 cut(s) 1094, 1236, 2641, 2690, 2692
Kpn2I TCCGGA 1 cut(s) 34
Ksp22I TGATCA 3 cut(s) 1272, 1366, 2494
KspAI GTTAAC 2 cut(s) 666, 2764
LguI GCTCTTC 1 cut(s) 1566
LmnI GCTCC 2 cut(s) 37, 2678
Lsp1109I GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2557, 2693
LweI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2198, 2605
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 9 cut(s) 1241, 1343, 1401, 1830, 1851, 1892, 2559, 2619, 2827
MaeII ACGT 3 cut(s) 1800, 2021, 2149
MaeIII GTNAC 3 cut(s) 630, 1803, 2217
MbiI CCGCTC 1 cut(s) 1246
MboII GAAGA 8 cut(s) 73, 275, 398, 956, 1177, 1583, 1706, 2636
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 8 cut(s) 4, 221, 712, 1087, 1291, 1489, 2204, 2633
MhlI GDGCHC 5 cut(s) 508, 910, 1155, 2298, 2434
MlsI TGGCCA 1 cut(s) 1320
MluNI TGGCCA 1 cut(s) 1320
MlyI GAGTC 3 cut(s) 640, 1451, 2435
MmeI TCCRAC 3 cut(s) 320, 867, 2611
Mox20I TGGCCA 1 cut(s) 1320
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 3 cut(s) 588, 747, 2708
MscI TGGCCA 1 cut(s) 1320
MslI CAYNNNNRTG 3 cut(s) 1911, 2343, 2427
Msp20I TGGCCA 1 cut(s) 1320
MspI CCGG 3 cut(s) 35, 615, 2029
MspR9I CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
MvnI CGCG 1 cut(s) 2692
NlaIV GGNNCC 5 cut(s) 6, 1089, 1293, 1982, 2635
NmeAIII GCCGAG 1 cut(s) 2270
NmuCI GTSAC 1 cut(s) 2217
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2493, 2671
PaeR7I CTCGAG 2 cut(s) 1373, 2121
PagI TCATGA 2 cut(s) 2344, 2380
PauI GCGCGC 1 cut(s) 2690
PceI AGGCCT 1 cut(s) 1514
PciI ACATGT 4 cut(s) 258, 1011, 1546, 2667
PciSI GCTCTTC 1 cut(s) 1566
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 3 cut(s) 588, 747, 2708
PfeI GAWTC 5 cut(s) 554, 890, 1128, 1557, 2657
PfoI TCCNGGA 2 cut(s) 918, 1614
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 7 cut(s) 898, 1116, 1185, 1354, 2453, 2572, 2683
PleI GAGTC 3 cut(s) 640, 1450, 2435
PpsI GAGTC 3 cut(s) 640, 1450, 2435
Ppu21I YACGTR 1 cut(s) 2150
PscI ACATGT 4 cut(s) 258, 1011, 1546, 2667
PshBI ATTAAT 1 cut(s) 2313
Psp6I CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
PspGI CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
PspN4I GGNNCC 5 cut(s) 6, 1089, 1293, 1982, 2635
PspPI GGNCC 3 cut(s) 19, 1997, 2283
PspXI VCTCGAGB 1 cut(s) 2121
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 8 cut(s) 4, 221, 712, 1087, 1291, 1489, 2204, 2633
PteI GCGCGC 1 cut(s) 2690
RsaI GTAC 8 cut(s) 190, 469, 982, 1041, 1071, 1388, 2471, 2742
RsaNI GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2470, 2741
RseI CAYNNNNRTG 3 cut(s) 1911, 2343, 2427
SapI GCTCTTC 1 cut(s) 1566
SatI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2452, 2571, 2682
Sau96I GGNCC 3 cut(s) 19, 1997, 2283
SchI GAGTC 3 cut(s) 640, 1451, 2435
ScrFI CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2484, 2513
SduI GDGCHC 5 cut(s) 508, 910, 1155, 2298, 2434
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2198, 2605
SfcI CTRYAG 2 cut(s) 1503, 2208
Sfr274I CTCGAG 2 cut(s) 1373, 2121
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 2 cut(s) 1373, 2121
SmiMI CAYNNNNRTG 3 cut(s) 1911, 2343, 2427
SmlI CTYRAG 8 cut(s) 63, 311, 334, 1160, 1373, 2121, 2180, 2364
SmoI CTYRAG 8 cut(s) 63, 311, 334, 1160, 1373, 2121, 2180, 2364
SseBI AGGCCT 1 cut(s) 1514
SsiI CCGC 4 cut(s) 219, 1246, 2355, 2452
SspMI CTAG 9 cut(s) 1241, 1343, 1401, 1830, 1851, 1892, 2559, 2619, 2827
StuI AGGCCT 1 cut(s) 1514
StyD4I CCNGG 7 cut(s) 364, 781, 918, 1055, 1614, 2482, 2511
TaaI ACNGT 2 cut(s) 472, 2820
TaiI ACGT 3 cut(s) 1803, 2024, 2152
TaqI TCGA 7 cut(s) 15, 115, 649, 751, 1374, 2122, 2232
TatI WGTACW 6 cut(s) 467, 980, 1039, 1386, 2469, 2740
TauI GCSGC 1 cut(s) 2454
TfiI GAWTC 5 cut(s) 554, 890, 1128, 1557, 2657
TscAI CASTG 5 cut(s) 202, 244, 477, 1747, 2226
TseFI GTSAC 1 cut(s) 2217
TseI GCWGC 6 cut(s) 896, 1114, 1183, 1352, 2570, 2681
Tsp45I GTSAC 1 cut(s) 2217
TspDTI ATGAA 7 cut(s) 157, 1597, 2333, 2361, 2369, 2408, 2786
TspGWI ACGGA 2 cut(s) 443, 2804
TspRI CASTG 5 cut(s) 202, 244, 477, 1747, 2226
VneI GTGCAC 2 cut(s) 1151, 2430
VpaK11BI GGWCC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 2313
XapI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2522
XceI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2493, 2671
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XhoI CTCGAG 2 cut(s) 1373, 2121
XmiI GTMKAC 1 cut(s) 1903
XmnI GAANNNNTTC 3 cut(s) 588, 747, 2708
XspI CTAG 9 cut(s) 1241, 1343, 1401, 1830, 1851, 1892, 2559, 2619, 2827
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.