RchiOBHm_Chr7g0184631

Component of the post-replicative DNA mismatch repair system (MMR)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006881
Physical Location & Seq
Forward (+)
5121996 .. 5128945
6950 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16472

Sequence Viewer

Length: 2874 bp
ATGGATCCCAATTTCGAGGACCAGAGCAAGCTTCCGGAGCTTAAATTAGATGCCAAGCAATCTCAAGGGTTTTTGTCATTCTTCAAAACCCTCCCCCATGACACAAGAGCTATTCGATTGTTTGATCGTCGGGACTACTATACTGCGCATGGTGAAAATGCTACTTTCATTGCAAAGACCTATTATCGTACCACCACCGCTCTGCGACAACTGGGTAGTGGATCTGATGGCCTATCCAGTGTGAGTGTTAGTAAGAACATGTTTGAAACAATTGCCCGTGATCTTCTACTGGAAAGAACAGACCATACTCTTGAGATTTATGAGGGTAGTGGCTCAAGTTGGAGACTTGTGAAAAGTGGAACGCCTGGAAATCTTGGAAGTTTTGAAGATGTATTATTTGCGAACAATGAGATGCAGGATACCCCCGTGGTTGTTGCACTATTACCTAACTTCCGTGAAAATGGTTGTACAGTGGGGTTAGGATATGTTGATCTAACTAAACGAGCACTTGGGTTAGCTGAATTTCTTGATGATAGCCACTTCACAAATTTGGAATCAGCTTTAGTTGCACTTGGTTGCAAGGAATGCCTTCTGCCTGTAGAGAGTGGGAAAACCGGTGAAATCAGAGCATTGCATGATGCATTGACTCGATGTGGTGTGATGTTAACTGAGAGAAAAAAGAGTGAATTTAAGATGAGGGATTTGGTTCAGGATCTCAGTCGGCTTGTCAAAGGAACTATTGAACCAGTTCGAGATTTAGTTTCTGGATTTGAGTTTGCACCTGGTGCATTGGGGGCATTGCTCTCTTATGCAGAACTACTTGCTGATGAGAGCAATTATGGAAACTATAACATCCAAAGATATAATCTTGATAACTATATGAGGTTGGATTCTGCTGCTATGAGGGCACTTAATATCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTTCTGAATAGAACCTGTACTGCTGGAATGGGTAAACGATTACTGCACATGTGGCTAAAACAGCCTTTATTAGATGTACAGGAAATCAATTCCAGGTTAGATTTGGTACAAACATTTGTGGAGGATCCTGCGCTTCGCCAAGATCTGAGGCAGCATCTGAAACGAATCTCAGACATTGAACGACTGGTGCACAGTCTTGAGAAGAAAAGAGCTGGTTTGCAGCATGTTGTAAAACTTTATCAGTCATGTATAAGGCTTCCATACATCAAAAGCGCCCTAGAGCGGTATGATGGAGAGTTTTCCTCGCTGATCAAGGAAAAATATTCGGATCCCCTTGCATTATGGACTGATGATGGCCACTTAAATAAGTTTCTTGCTCTAGTGGAAGCTGCTGTTGACCTTGATCAACTGGAGAATGGAGAGTACATGATAGCGTCTAGTTATGATCCTGCTCTTTCTGCACTAAAGAATGAGCAAGAGTCGCTTGCTCAGCAGATACACAATTTGCATAAACAAACTGCTAAGGATCTTGATCTCTCTATAGATAAGGCCTTGAAGTTAGATAAAGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAAAAGCTCACAACACAATTCATTGTCCTGGAAACCCGAAAAGATGGAGTGAAATTCACTAATACTAAGCTTAAAAAGTTAGGGGATCAATATCAGAGAATACTTGAAGAGTATAAAAATTGTCAGAAAGAACTGGTGAACCGAGTTGTTCACACTGCATCCTCTTTCTCAGAGGTGTTTTGTAATGTAGCTGGCTTGCTTTCTGAATTGGATGTGTTACTTAGTTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCTTATACTAGGCCACTCATCACTCCATCGTTTGTATTTATTCATAAAATGATTATTGACTTATTGGCTATAATAGGATGTGGGGATATTATACTAGAAGGGAGTAGACATCCTTGTGTGGAGGCTCAGGACTGGGTTAATTTTATACCCAATGATTGTAAACTTGTAAGAGGAAAGAGTTGGTTCCAAATCATTACAGGGCCTAATATGGGTGGAAAATCCACGTTTATCCGGCAGGTTGGTGTGATTATTCTAATGGCACAAGTTGGTTCTTTTGTTCCTTGTGAGAAGGCTACCATTTCTATTCGTGATTGCATTTTTGCTCGAGTGGGTGCTGGTGATTGCCAACTACGTGGTGTTTCTACCTTTATGCAAGAAATGCTTGAGACTGCATCTATACTGAAAGGATCTACAGATAAGTCACTGATAATCATCGACGAGTTAGGCCGAGGGACATCAACTTATGATGGATTCGGTTTGGCTTGGGCCATTTGCGAGCACCTTGTTGAAGTGATTAATGCACCCACTTTGTTTGCAACTCACTTTCATGAATTGACCGCATTAGCTCAAGAAAATGCTGTTCATGAGCCTAATATGAAGCAAATTGTTGGTGTTGCGAACTATCATGTTAGTGCACATATTGACTCATCAAGCCGCAAGTTGACTATGCTGTACAAGGTTGAGCCAGGGGCATGTGATCAAAGTTTCGGTATCCAGGTTGCAGAATTTGCAAACTTTCCTGAAAGTGTTGTTGCCCTTGCTAGAGAAAAGGCTGCTGAATTGGAGGATTTCACTCCTACTGCCGTCATTCCAAATGATGCTAGAGAAGAGGTTGGATCCAAGCGCAAGAGAGAGTATGATTCTGATGACATGTCTAGAGGAGCAGCTCGTGCACGCAAGTTTTTGAAGGAGTTCTCTGAAATGCCATTAGATACAATGGATGTACAGCAGGCTTTGCAAATAGTTAACAAGATGAAGGATGACTTGCAAACGGAGGCAGTAAACAGCCAATGGCTACAACAGTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

957

Amino Acids

107.33

Weight (kDa)

5.9

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_I PF01624 23 - 128 1.3e-16 MutS domain I
MutS_II PF05188 152 - 282 7.6e-15 MutS domain II
MutS_III PF05192 299 - 606 1.1e-39 MutS domain III
MutS_IV PF05190 469 - 565 2.3e-19 MutS family domain IV
MutS_V PF00488 677 - 876 9.2e-79 MutS domain V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 2068
AccBSI CCGCTC 2 cut(s) 200, 1246
AccI GTMKAC 1 cut(s) 1948
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 4 cut(s) 198, 1246, 2400, 2497
AcoI YGGCCR 1 cut(s) 1318
AcsI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2567
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 8 cut(s) 190, 469, 982, 1041, 1071, 1388, 2516, 2787
AfiI CCNNNNNNNGG 2 cut(s) 1245, 2051
AflIII ACRYGT 4 cut(s) 258, 1011, 1546, 2712
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 9 cut(s) 85, 266, 386, 743, 1142, 1519, 1694, 2351, 2749
AjnI CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
Alw21I GWGCWC 5 cut(s) 508, 1155, 2343, 2479, 2737
Alw26I GTCTC 2 cut(s) 337, 2222
Alw44I GTGCAC 3 cut(s) 1151, 2475, 2733
AlwNI CAGNNNCTG 1 cut(s) 1120
Ama87I CYCGRG 1 cut(s) 2166
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 7 cut(s) 229, 1318, 1512, 1853, 2042, 2287, 2328
ApaLI GTGCAC 3 cut(s) 1151, 2475, 2733
ApeKI GCWGC 6 cut(s) 896, 1114, 1183, 1352, 2615, 2726
ApoI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2567
AseI ATTAAT 1 cut(s) 2358
AsiGI ACCGGT 1 cut(s) 614
Asp700I GAANNNNTTC 3 cut(s) 588, 747, 2753
AspLEI GCGC 4 cut(s) 148, 1096, 1238, 2688
AspS9I GGNCC 3 cut(s) 19, 2042, 2328
AsuHPI GGTGA 4 cut(s) 164, 629, 1735, 2192
AvaI CYCGRG 1 cut(s) 2166
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 4 cut(s) 910, 1155, 2479, 2737
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BalI TGGCCA 1 cut(s) 1320
BamHI GGATCC 4 cut(s) 4, 1087, 1291, 2678
BauI CACGAG 1 cut(s) 2730
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 5 cut(s) 508, 1155, 2343, 2479, 2737
BbvI GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2602, 2738
BccI CCATC 6 cut(s) 221, 1247, 1310, 1625, 1876, 2303
BceAI ACGGC 1 cut(s) 2630
BciT130I CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
BciVI GTATCC 2 cut(s) 412, 2564
BclI TGATCA 3 cut(s) 1272, 1366, 2539
BcoDI GTCTC 2 cut(s) 337, 2222
BfmI CTRYAG 3 cut(s) 597, 1503, 2253
BfoI RGCGCY 1 cut(s) 1239
BfuAI ACCTGC 1 cut(s) 2068
BfuI GTATCC 2 cut(s) 412, 2564
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2497, 2616, 2727
BlpI GCTNAGC 1 cut(s) 1452
BlsI GCNGC 7 cut(s) 898, 1116, 1185, 1354, 2498, 2617, 2728
Bme1390I CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 2166
BmgT120I GGNCC 3 cut(s) 19, 2042, 2328
BmiI GGNNCC 5 cut(s) 6, 1089, 1293, 2027, 2680
BmrFI CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
BmrI ACTGGG 2 cut(s) 221, 1984
BmsI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2243, 2650
BmuI ACTGGG 2 cut(s) 221, 1984
BpiI GAAGAC 1 cut(s) 956
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 1394
Bpu10I CCTNAGC 2 cut(s) 1485, 1968
Bpu1102I GCTNAGC 1 cut(s) 1452
BpuEI CTTGAG 6 cut(s) 48, 319, 332, 1181, 2246, 2394
BsaAI YACGTR 1 cut(s) 2195
BsaBI GATNNNNATC 3 cut(s) 1494, 1677, 2273
BsaJI CCNNGG 3 cut(s) 426, 2290, 2528
BsaWI WCCGGW 2 cut(s) 34, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 1245, 2051
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 8 cut(s) 216, 237, 294, 746, 1152, 1377, 1725, 1979
Bse3DI GCAATG 3 cut(s) 168, 629, 797
Bse8I GATNNNNATC 3 cut(s) 1494, 1677, 2273
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
BseDI CCNNGG 3 cut(s) 426, 2290, 2528
BseGI GGATG 7 cut(s) 852, 1745, 1804, 1925, 1951, 2788, 2827
BseJI GATNNNNATC 3 cut(s) 1494, 1677, 2273
BseLI CCNNNNNNNGG 2 cut(s) 1245, 2051
BseMI GCAATG 3 cut(s) 168, 629, 797
BseMII CTCAG 7 cut(s) 660, 730, 1100, 1146, 1466, 1770, 1982
BseNI ACTGG 8 cut(s) 216, 237, 294, 746, 1152, 1377, 1725, 1979
BseRI GAGGAG 1 cut(s) 2736
BseSI GKGCMC 4 cut(s) 910, 1155, 2479, 2737
BseXI GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2602, 2738
BsgI GTGCAG 2 cut(s) 992, 1407
BshFI GGCC 7 cut(s) 231, 1320, 1514, 1855, 2044, 2289, 2330
BshTI ACCGGT 1 cut(s) 614
BsiHKAI GWGCWC 5 cut(s) 508, 1155, 2343, 2479, 2737
BsiHKCI CYCGRG 1 cut(s) 2166
BsiSI CCGG 3 cut(s) 35, 615, 2074
BslFI GGGAC 2 cut(s) 146, 2308
BslI CCNNNNNNNGG 2 cut(s) 1245, 2051
BsmAI GTCTC 2 cut(s) 337, 2222
BsmFI GGGAC 2 cut(s) 146, 2308
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 7 cut(s) 231, 1320, 1514, 1855, 2044, 2289, 2330
BsoBI CYCGRG 1 cut(s) 2166
Bsp1286I GDGCHC 6 cut(s) 508, 910, 1155, 2343, 2479, 2737
Bsp13I TCCGGA 1 cut(s) 34
Bsp1407I TGTACA 4 cut(s) 467, 1039, 2514, 2785
Bsp1720I GCTNAGC 1 cut(s) 1452
BspACI CCGC 4 cut(s) 198, 1246, 2400, 2497
BspANI GGCC 7 cut(s) 231, 1320, 1514, 1855, 2044, 2289, 2330
BspCNI CTCAG 7 cut(s) 661, 729, 1101, 1145, 1465, 1769, 1981
BspEI TCCGGA 1 cut(s) 34
BspHI TCATGA 2 cut(s) 2389, 2425
BspLI GGNNCC 5 cut(s) 6, 1089, 1293, 2027, 2680
BspMI ACCTGC 1 cut(s) 2068
BspQI GCTCTTC 1 cut(s) 1566
BsrBI CCGCTC 2 cut(s) 200, 1246
BsrDI GCAATG 3 cut(s) 168, 629, 797
BsrFI RCCGGY 1 cut(s) 614
BsrGI TGTACA 4 cut(s) 467, 1039, 2514, 2785
BsrI ACTGG 8 cut(s) 216, 237, 294, 746, 1152, 1377, 1725, 1979
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 426, 2290, 2528
BssSI CACGAG 1 cut(s) 2730
Bst2BI CACGAG 1 cut(s) 2730
Bst2UI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
Bst4CI ACNGT 3 cut(s) 472, 1157, 2865
Bst6I CTCTTC 3 cut(s) 1566, 1689, 2664
BstAPI GCANNNNNTGC 6 cut(s) 585, 785, 2221, 2570, 2732, 2797
BstAUI TGTACA 4 cut(s) 467, 1039, 2514, 2785
BstBAI YACGTR 1 cut(s) 2195
BstC8I GCNNGC 7 cut(s) 29, 1449, 1780, 1784, 2339, 2737, 2793
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 7 cut(s) 852, 1745, 1804, 1925, 1951, 2788, 2827
BstH2I RGCGCY 1 cut(s) 1239
BstHHI GCGC 4 cut(s) 148, 1096, 1238, 2688
BstMAI GTCTC 2 cut(s) 337, 2222
BstNI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
BstNSI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2538, 2716
BstSCI CCNGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
BstSFI CTRYAG 3 cut(s) 597, 1503, 2253
BstSLI GKGCMC 4 cut(s) 910, 1155, 2479, 2737
BstV1I GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2602, 2738
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 9 cut(s) 4, 221, 712, 1087, 1105, 1291, 1489, 2249, 2678
BstXI CCANNNNNNTGG 1 cut(s) 2195
BstYI RGATCY 9 cut(s) 4, 221, 712, 1087, 1105, 1291, 1489, 2249, 2678
BsuI GTATCC 2 cut(s) 412, 2564
BsuRI GGCC 7 cut(s) 231, 1320, 1514, 1855, 2044, 2289, 2330
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 7 cut(s) 852, 1745, 1804, 1925, 1951, 2788, 2827
BtsI GCAGTG 1 cut(s) 1740
BtsIMutI CAGTG 4 cut(s) 244, 477, 1740, 2264
BveI ACCTGC 1 cut(s) 2068
Cac8I GCNNGC 7 cut(s) 29, 1449, 1780, 1784, 2339, 2737, 2793
CaiI CAGNNNCTG 1 cut(s) 1120
CciI TCATGA 2 cut(s) 2389, 2425
CfoI GCGC 4 cut(s) 148, 1096, 1238, 2688
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 3 cut(s) 19, 2042, 2328
CseI GACGC 1 cut(s) 1386
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2515, 2786
CspAI ACCGGT 1 cut(s) 614
CspCI CAANNNNNGTGG 2 cut(s) 2356, 2391
CviQI GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2515, 2786
DraIII CACNNNGTG 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 1318
Eam1104I CTCTTC 3 cut(s) 1566, 1689, 2664
EarI CTCTTC 3 cut(s) 1566, 1689, 2664
Eco147I AGGCCT 1 cut(s) 1514
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 2166
EcoO109I RGGNCCY 1 cut(s) 2042
EcoRII CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
EcoT22I ATGCAT 1 cut(s) 643
FalI AAGNNNNNCTT 6 cut(s) 1431, 1463, 2208, 2240, 2810, 2842
FaqI GGGAC 2 cut(s) 146, 2308
FbaI TGATCA 3 cut(s) 1272, 1366, 2539
FblI GTMKAC 1 cut(s) 1948
Fnu4HI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2497, 2616, 2727
FokI GGATG 7 cut(s) 839, 1732, 1811, 1932, 1938, 2795, 2834
Fsp4HI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2497, 2616, 2727
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 4 cut(s) 147, 1095, 1237, 2687
GluI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2497, 2616, 2727
GsuI CTGGAG 1 cut(s) 1394
HaeII RGCGCY 1 cut(s) 1239
HaeIII GGCC 7 cut(s) 231, 1320, 1514, 1855, 2044, 2289, 2330
HapII CCGG 3 cut(s) 35, 615, 2074
HgaI GACGC 1 cut(s) 1386
HhaI GCGC 4 cut(s) 148, 1096, 1238, 2688
Hin6I GCGC 4 cut(s) 146, 1094, 1236, 2686
HinP1I GCGC 4 cut(s) 146, 1094, 1236, 2686
HincII GTYRAC 4 cut(s) 666, 1360, 2505, 2809
HindII GTYRAC 4 cut(s) 666, 1360, 2505, 2809
HindIII AAGCTT 2 cut(s) 29, 1655
HinfI GANTC 9 cut(s) 554, 646, 890, 1128, 1442, 1557, 2313, 2486, 2702
HpaI GTTAAC 2 cut(s) 666, 2809
HpaII CCGG 3 cut(s) 35, 615, 2074
HphI GGTGA 4 cut(s) 164, 629, 1735, 2192
Hpy99I CGWCG 2 cut(s) 132, 2282
HpyAV CCTTC 6 cut(s) 599, 1561, 1934, 2125, 2743, 2812
HpyCH4III ACNGT 3 cut(s) 472, 1157, 2865
HpyCH4IV ACGT 2 cut(s) 2066, 2194
HpySE526I ACGT 2 cut(s) 2066, 2194
HspAI GCGC 4 cut(s) 146, 1094, 1236, 2686
Kpn2I TCCGGA 1 cut(s) 34
Ksp22I TGATCA 3 cut(s) 1272, 1366, 2539
KspAI GTTAAC 2 cut(s) 666, 2809
LguI GCTCTTC 1 cut(s) 1566
LmnI GCTCC 2 cut(s) 37, 2723
Lsp1109I GCAGC 6 cut(s) 883, 1126, 1195, 1339, 2602, 2738
LweI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2243, 2650
MabI ACCWGGT 1 cut(s) 781
MaeII ACGT 2 cut(s) 2066, 2194
MaeIII GTNAC 2 cut(s) 1803, 2262
MbiI CCGCTC 2 cut(s) 200, 1246
MboII GAAGA 8 cut(s) 73, 275, 398, 956, 1177, 1583, 1706, 2681
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 9 cut(s) 4, 221, 712, 1087, 1105, 1291, 1489, 2249, 2678
MhlI GDGCHC 6 cut(s) 508, 910, 1155, 2343, 2479, 2737
MlsI TGGCCA 1 cut(s) 1320
MluNI TGGCCA 1 cut(s) 1320
MlyI GAGTC 3 cut(s) 640, 1451, 2480
MmeI TCCRAC 3 cut(s) 320, 867, 2656
Mox20I TGGCCA 1 cut(s) 1320
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 3 cut(s) 588, 747, 2753
MscI TGGCCA 1 cut(s) 1320
MseI TTAA 9 cut(s) 42, 665, 690, 912, 1325, 1659, 1980, 2358, 2808
MslI CAYNNNNRTG 3 cut(s) 1956, 2388, 2472
Msp20I TGGCCA 1 cut(s) 1320
MspI CCGG 3 cut(s) 35, 615, 2074
MspR9I CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
NlaIV GGNNCC 5 cut(s) 6, 1089, 1293, 2027, 2680
NmeAIII GCCGAG 1 cut(s) 2315
NmuCI GTSAC 1 cut(s) 2262
NsbI TGCGCA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2538, 2716
PaeR7I CTCGAG 1 cut(s) 2166
PagI TCATGA 2 cut(s) 2389, 2425
PceI AGGCCT 1 cut(s) 1514
PciI ACATGT 4 cut(s) 258, 1011, 1546, 2712
PciSI GCTCTTC 1 cut(s) 1566
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 3 cut(s) 588, 747, 2753
PfeI GAWTC 6 cut(s) 554, 890, 1128, 1557, 2313, 2702
PfoI TCCNGGA 2 cut(s) 918, 1614
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 7 cut(s) 898, 1116, 1185, 1354, 2498, 2617, 2728
PleI GAGTC 3 cut(s) 640, 1450, 2480
PpsI GAGTC 3 cut(s) 640, 1450, 2480
Ppu21I YACGTR 1 cut(s) 2195
PscI ACATGT 4 cut(s) 258, 1011, 1546, 2712
PshBI ATTAAT 1 cut(s) 2358
Psp6I CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
PspGI CCWGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
PspN4I GGNNCC 5 cut(s) 6, 1089, 1293, 2027, 2680
PspPI GGNCC 3 cut(s) 19, 2042, 2328
PspXI VCTCGAGB 1 cut(s) 2166
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 9 cut(s) 4, 221, 712, 1087, 1105, 1291, 1489, 2249, 2678
RsaI GTAC 8 cut(s) 190, 469, 982, 1041, 1071, 1388, 2516, 2787
RsaNI GTAC 8 cut(s) 189, 468, 981, 1040, 1070, 1387, 2515, 2786
RseI CAYNNNNRTG 3 cut(s) 1956, 2388, 2472
SapI GCTCTTC 1 cut(s) 1566
SaqAI TTAA 9 cut(s) 42, 665, 690, 912, 1325, 1659, 1980, 2358, 2808
SatI GCNGC 7 cut(s) 897, 1115, 1184, 1353, 2497, 2616, 2727
Sau96I GGNCC 3 cut(s) 19, 2042, 2328
SchI GAGTC 3 cut(s) 640, 1451, 2480
ScrFI CCNGG 7 cut(s) 366, 783, 920, 1057, 1616, 2529, 2558
SduI GDGCHC 6 cut(s) 508, 910, 1155, 2343, 2479, 2737
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 8 cut(s) 40, 402, 628, 925, 1126, 1754, 2243, 2650
SfcI CTRYAG 3 cut(s) 597, 1503, 2253
Sfr274I CTCGAG 1 cut(s) 2166
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 2166
SmiMI CAYNNNNRTG 3 cut(s) 1956, 2388, 2472
SmlI CTYRAG 7 cut(s) 63, 311, 334, 1160, 2166, 2225, 2409
SmoI CTYRAG 7 cut(s) 63, 311, 334, 1160, 2166, 2225, 2409
SseBI AGGCCT 1 cut(s) 1514
SsiI CCGC 4 cut(s) 198, 1246, 2400, 2497
SspI AATATT 1 cut(s) 1286
StuI AGGCCT 1 cut(s) 1514
StyD4I CCNGG 7 cut(s) 364, 781, 918, 1055, 1614, 2527, 2556
TaaI ACNGT 3 cut(s) 472, 1157, 2865
TaiI ACGT 2 cut(s) 2069, 2197
TaqI TCGA 6 cut(s) 15, 115, 649, 751, 2167, 2277
TatI WGTACW 6 cut(s) 467, 980, 1039, 1386, 2514, 2785
TauI GCSGC 1 cut(s) 2499
TfiI GAWTC 6 cut(s) 554, 890, 1128, 1557, 2313, 2702
Tru1I TTAA 9 cut(s) 42, 665, 690, 912, 1325, 1659, 1980, 2358, 2808
Tru9I TTAA 9 cut(s) 42, 665, 690, 912, 1325, 1659, 1980, 2358, 2808
TscAI CASTG 4 cut(s) 244, 477, 1747, 2271
TseFI GTSAC 1 cut(s) 2262
TseI GCWGC 6 cut(s) 896, 1114, 1183, 1352, 2615, 2726
Tsp45I GTSAC 1 cut(s) 2262
TspDTI ATGAA 8 cut(s) 157, 1597, 1874, 2378, 2406, 2414, 2453, 2831
TspGWI ACGGA 2 cut(s) 443, 2849
TspRI CASTG 4 cut(s) 244, 477, 1747, 2271
VneI GTGCAC 3 cut(s) 1151, 2475, 2733
VpaK11BI GGWCC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 2358
XapI RAATTY 6 cut(s) 521, 547, 686, 946, 1640, 2567
XbaI TCTAGA 1 cut(s) 2717
XceI RCATGY 6 cut(s) 262, 1015, 1190, 1550, 2538, 2716
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XhoI CTCGAG 1 cut(s) 2166
XmiI GTMKAC 1 cut(s) 1948
XmnI GAANNNNTTC 3 cut(s) 588, 747, 2753
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.