Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372741.1

Orthogroup ID

OG0006881

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1028

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

aaatatgtactatttcaggactactatactgctcatggtgaaaatgctactttcattgcaaagacctattatcgtaccaccactgctctgcgacaactgggtagtggatctgatggcctatccagtgtgagtgttagtaagaacatgtttgaaacaattgcccgtgatcttctactggaaagaacagaccatactcttgagatttatgagggtagtggctcaagttggagacttgtgaaaagtggaacgcctggaaatcttggaagtttcgaagatgtattatttgcgaacaatgagatgcaggatacccccgtggttgttgcactattacctaacttccgtgaaaatggttgtacagtggggttaggatatgttgatctaactaaacgagcacttgggttagctgaatttcttgatgatagccacttcacaaatttggaatcagctttagttgcacttggttgcaaggaatgccttctgcctgtagagagtgggaaaaccggtgaaatcagagcattacatgatgcattgactcgatgtggtgtgatgttaactgagagaaaaaagagtgaatttaagatgagggatttggttcaggatctcagtcggcttgtcaaaggaactattgaaccagttcgagatttagtttctggatttgagtttgcacctggtgcattgggggcattgctctcttatgcagaactacttgctgatgagagcaattatggaaactataacatccaaagatataatcttgataactatatgaggttggattctgctgctatgagggcacttaatatcctggaaagcaaaactgatgcaaacaaaaatttcagtttgtttggtcttctgaatagaacctgtactgctggaatgggatcctgcgcttcgccaagatctgaggcagcatctgaaacgaatctcagacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

311

Amino Acids

34.21

Weight (kDa)

5.39

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18524
fragaria_vesca	FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700
malus_domestica	MD06G1211200.v1.1 MD14G1221900.v1.1
prunus_persica	Prupe.5G217300_v2.0.a1 Prupe.5G217300_v2.0.a1
pyrus_communis	pycom06g18850 pycom14g18350
rosa_chinensis	RchiOBHm_Chr7g0184631
rosa_laevigata	RLG00000004964
rosa_multiflora	Rmu_co8151106.1_g000001 Rmu_co8372741.1_g000001 Rmu_sc0009731.1_g000001 Rmu_sc0030268.1_g000001 Rmu_ssc0000289.1_g000029
rosa_roxburghii	Rroxscaffold_3G00269470
rosa_samantha	Rh7AG078900 Rh7BG068400 Rh7CG069200 Rh7DG068500
rosa_wichuraiana	Rw7G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	115, 606, 876, 889
AcsI	RAATTY	4 cut(s)	407, 433, 572, 832
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	4 cut(s)	9, 76, 355, 868
AflIII	ACRYGT	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	152, 629
AjnI	CCWGG	3 cut(s)	250, 667, 804
AluBI	AGCT	2 cut(s)	404, 446
AluI	AGCT	2 cut(s)	404, 446
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	4 cut(s)	115, 606, 876, 889
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	782, 908
ApoI	RAATTY	4 cut(s)	407, 433, 572, 832
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	2 cut(s)	474, 633
AspLEI	GCGC	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	50, 515
AsuII	TTCGAA	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BamHI	GGATCC	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	769, 920
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	3 cut(s)	252, 669, 806
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	298
BglII	AGATCT	1 cut(s)	899
BisI	GCNGC	2 cut(s)	783, 909
BlsI	GCNGC	2 cut(s)	784, 910
Bme1390I	CCNGG	3 cut(s)	252, 669, 806
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	3 cut(s)	252, 669, 806
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	288, 514, 811, 920
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	842
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	205, 218
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	4 cut(s)	102, 123, 180, 632
Bse3DI	GCAATG	2 cut(s)	54, 683
BseBI	CCWGG	3 cut(s)	252, 669, 806
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	738
BseMI	GCAATG	2 cut(s)	54, 683
BseMII	CTCAG	3 cut(s)	546, 616, 894
BseNI	ACTGG	4 cut(s)	102, 123, 180, 632
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	769, 920
BshFI	GGCC	1 cut(s)	117
BshTI	ACCGGT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	394, 796
Bsp1407I	TGTACA	1 cut(s)	353
Bsp143I	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	547, 615, 895
BspLI	GGNNCC	1 cut(s)	883
BspPI	GGATC	4 cut(s)	115, 606, 876, 889
BspT104I	TTCGAA	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	54, 683
BsrFI	RCCGGY	1 cut(s)	500
BsrGI	TGTACA	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	102, 123, 180, 632
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
Bst2UI	CCWGG	3 cut(s)	252, 669, 806
Bst4CI	ACNGT	1 cut(s)	358
BstAPI	GCANNNNNTGC	2 cut(s)	471, 671
BstAUI	TGTACA	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	555, 602, 903, 926
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	890
BstKTI	GATC	6 cut(s)	110, 169, 379, 601, 884, 902
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 471, 671, 680, 791
BstNI	CCWGG	3 cut(s)	252, 669, 806
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	250, 667, 804
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	769, 920
BstV2I	GAAGAC	1 cut(s)	842
BstX2I	RGATCY	4 cut(s)	107, 598, 881, 899
BstYI	RGATCY	4 cut(s)	107, 598, 881, 899
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	738
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	81, 130, 363
CaiI	CAGNNNCTG	1 cut(s)	914
CfoI	GCGC	1 cut(s)	890
Cfr10I	RCCGGY	1 cut(s)	500
CsiI	ACCWGGT	1 cut(s)	667
Csp6I	GTAC	4 cut(s)	8, 75, 354, 867
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	3 cut(s)	35, 145, 521
CviJI	RGCY	6 cut(s)	117, 219, 404, 423, 446, 610
CviKI_1	RGCY	6 cut(s)	117, 219, 404, 423, 446, 610
CviQI	GTAC	4 cut(s)	8, 75, 354, 867
DdeI	CTNAG	4 cut(s)	555, 602, 903, 926
DpnI	GATC	6 cut(s)	109, 168, 378, 600, 883, 901
DpnII	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
DraIII	CACNNNGTG	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	250, 667, 804
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	3 cut(s)	38, 148, 524
FatI	CATG	3 cut(s)	34, 144, 520
Fnu4HI	GCNGC	2 cut(s)	783, 909
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	2 cut(s)	783, 909
GlaI	GCGC	1 cut(s)	889
GluI	GCNGC	2 cut(s)	783, 909
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	890
Hin1II	CATG	3 cut(s)	38, 148, 524
Hin6I	GCGC	1 cut(s)	888
HinP1I	GCGC	1 cut(s)	888
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	4 cut(s)	440, 532, 776, 922
HpaI	GTTAAC	1 cut(s)	552
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	50, 515
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	6 cut(s)	112, 512, 855, 904, 916, 929
Hpy188III	TCNNGA	7 cut(s)	17, 197, 413, 596, 638, 651, 755
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 471, 671, 680, 791
HpyF3I	CTNAG	4 cut(s)	555, 602, 903, 926
Hsp92II	CATG	3 cut(s)	38, 148, 524
HspAI	GCGC	1 cut(s)	888
KspAI	GTTAAC	1 cut(s)	552
Kzo9I	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
Lsp1109I	GCAGC	2 cut(s)	769, 920
LweI	GCATC	4 cut(s)	288, 514, 811, 920
MabI	ACCWGGT	1 cut(s)	667
MalI	GATC	6 cut(s)	109, 168, 378, 600, 883, 901
MboI	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
MboII	GAAGA	3 cut(s)	161, 284, 842
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	4 cut(s)	107, 598, 881, 899
MhlI	GDGCHC	2 cut(s)	394, 796
MluCI	AATT	6 cut(s)	156, 407, 433, 572, 721, 832
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	206, 753
MnlI	CCTC	5 cut(s)	202, 576, 762, 783, 898
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	2 cut(s)	474, 633
MseI	TTAA	3 cut(s)	551, 576, 798
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	252, 669, 806
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	3 cut(s)	252, 669, 806
MwoI	GCNNNNNNNGC	5 cut(s)	452, 471, 671, 680, 791
NdeII	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
NlaIII	CATG	3 cut(s)	38, 148, 524
NlaIV	GGNNCC	1 cut(s)	883
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	270
PciI	ACATGT	1 cut(s)	144
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	2 cut(s)	474, 633
PfeI	GAWTC	3 cut(s)	440, 776, 922
PfoI	TCCNGGA	1 cut(s)	804
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	784, 910
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PscI	ACATGT	1 cut(s)	144
Psp6I	CCWGG	3 cut(s)	250, 667, 804
PspGI	CCWGG	3 cut(s)	250, 667, 804
PspN4I	GGNNCC	1 cut(s)	883
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	4 cut(s)	107, 598, 881, 899
RsaI	GTAC	4 cut(s)	9, 76, 355, 868
RsaNI	GTAC	4 cut(s)	8, 75, 354, 867
SaqAI	TTAA	3 cut(s)	551, 576, 798
SatI	GCNGC	2 cut(s)	783, 909
Sau3AI	GATC	6 cut(s)	107, 166, 376, 598, 881, 899
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	3 cut(s)	252, 669, 806
SduI	GDGCHC	2 cut(s)	394, 796
SetI	ASST	7 cut(s)	68, 334, 406, 448, 670, 773, 866
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	4 cut(s)	288, 514, 811, 920
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	197, 220
SmoI	CTYRAG	2 cut(s)	197, 220
Sse9I	AATT	6 cut(s)	156, 407, 433, 572, 721, 832
StyD4I	CCNGG	3 cut(s)	250, 667, 804
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	270, 535, 637
TasI	AATT	6 cut(s)	156, 407, 433, 572, 721, 832
TatI	WGTACW	3 cut(s)	7, 353, 866
TfiI	GAWTC	3 cut(s)	440, 776, 922
Tru1I	TTAA	3 cut(s)	551, 576, 798
Tru9I	TTAA	3 cut(s)	551, 576, 798
TscAI	CASTG	3 cut(s)	88, 130, 363
TseI	GCWGC	2 cut(s)	782, 908
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	88, 130, 363
XapI	RAATTY	4 cut(s)	407, 433, 572, 832
XceI	RCATGY	1 cut(s)	148
XmnI	GAANNNNTTC	2 cut(s)	474, 633
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.