Rmu_co8151106.1_g000001

Component of the post-replicative DNA mismatch repair system (MMR)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8151106.1
OG0006881
Physical Location & Seq
Forward (+)
1 .. 651
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8151106.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
gtttggcttgggccatttgcgagcacctcgttgaagtgattaatgcacccactttgtttgcaactcactttcatgaattgaccgcattagctcaagaaaatgctgttcatgagcctaatatgaagcaaattgttggtgttgcgaactatcatgttagtgcacatattgactcatcaagccgcaagttgactatgctgtacaaggttgagccaggggcatgtgatcaaagtttcggtatccaggttgcagaatttgcaaactttcctgaaagtgttgttgcccttgctagagaaaaggctgctgaattggaggatttcactcctactgccgtcattccaaatgatgctagagaagaggtacttcaaacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

122

Amino Acids

13.41

Weight (kDa)

4.84

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 180
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 2 cut(s) 199, 359
AgsI TTSAA 2 cut(s) 34, 364
AjnI CCWGG 2 cut(s) 210, 239
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 2 cut(s) 26, 162
Alw44I GTGCAC 1 cut(s) 158
AoxI GGCC 1 cut(s) 11
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 250
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 26, 162
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 212, 241
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 1 cut(s) 222
BfaI CTAG 2 cut(s) 287, 347
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 2 cut(s) 180, 299
BlsI GCNGC 2 cut(s) 181, 300
Bme1390I CCNGG 2 cut(s) 212, 241
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 212, 241
BmsI GCATC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 211
BseBI CCWGG 2 cut(s) 212, 241
BseDI CCNNGG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 26, 162
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 26, 162
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 2 cut(s) 83, 180
BspANI GGCC 1 cut(s) 13
BspHI TCATGA 2 cut(s) 72, 108
BsrGI TGTACA 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 212, 241
Bst6I CTCTTC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 2 cut(s) 212, 241
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 210, 239
BstSLI GKGCMC 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 285
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 2 cut(s) 72, 108
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 198, 358
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 4 cut(s) 73, 109, 151, 218
CviJI RGCY 7 cut(s) 7, 13, 91, 114, 179, 210, 298
CviKI_1 RGCY 7 cut(s) 7, 13, 91, 114, 179, 210, 298
CviQI GTAC 2 cut(s) 198, 358
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 210, 239
FaeI CATG 4 cut(s) 76, 112, 154, 221
FaiI YATR 7 cut(s) 74, 110, 121, 152, 164, 193, 219
FalI AAGNNNNNCTT 1 cut(s) 344
FatI CATG 4 cut(s) 72, 108, 150, 217
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 180, 299
Fsp4HI GCNGC 2 cut(s) 180, 299
FspBI CTAG 2 cut(s) 287, 347
GluI GCNGC 2 cut(s) 180, 299
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 4 cut(s) 76, 112, 154, 221
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 160, 188
Hpy188III TCNNGA 4 cut(s) 73, 94, 109, 265
Hpy8I GTNNAC 2 cut(s) 160, 188
HpyCH4V TGCA 5 cut(s) 46, 61, 160, 247, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
Hsp92II CATG 4 cut(s) 76, 112, 154, 221
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 197, 224, 226, 253, 278
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 333
MaeI CTAG 2 cut(s) 287, 347
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 26, 162
MluCI AATT 4 cut(s) 76, 128, 250, 304
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 3 cut(s) 37, 303, 348
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 71, 155
MspR9I CCNGG 2 cut(s) 212, 241
MvaI CCWGG 2 cut(s) 212, 241
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 1 cut(s) 222
NlaIII CATG 4 cut(s) 76, 112, 154, 221
NspI RCATGY 1 cut(s) 221
PagI TCATGA 2 cut(s) 72, 108
PkrI GCNGC 2 cut(s) 181, 300
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 210, 239
PspGI CCWGG 2 cut(s) 210, 239
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 2 cut(s) 199, 359
RsaNI GTAC 2 cut(s) 198, 358
RseI CAYNNNNRTG 2 cut(s) 71, 155
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 180, 299
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 212, 241
SduI GDGCHC 2 cut(s) 26, 162
SetI ASST 5 cut(s) 29, 93, 206, 245, 359
SfaNI GCATC 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 71, 155
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 76, 128, 250, 304
SsiI CCGC 2 cut(s) 83, 180
SspMI CTAG 2 cut(s) 287, 347
StyD4I CCNGG 2 cut(s) 210, 239
TasI AATT 4 cut(s) 76, 128, 250, 304
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 61, 89, 97, 136
VneI GTGCAC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 221
XspI CTAG 2 cut(s) 287, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.