Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030268.1

Orthogroup ID

OG0006881

Physical Location & Seq

Genomic Coordinates Reverse (-)

228 .. 2429

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggatcccaatttcgaggaccagagcaaacttccggagcttaaattagatgccaagcaatctcaagggtttttgtcattcttcaaaaccctcccccatgacacaagagctattcgattgtttgatcgtcgggactactatactgctcatggtgaaaatgctactttcattgcaaagacctattatcgtaccaccactgctctgcgacaactgggtagtggatctgatggcctatccagtgtgagtgttagtaagaacatgtttgaaacaattgcccgtgatcttctactggaaagaacagaccatactcttgagatttatgagggtagtggctcaagttggagacttgtgaaaagtggaacgcctggaaatcttggaagtttcgaagatgtattatttgcgaacaatgagatgcaggatacccccgtggttgttgcactattacctaacttccgtgaaaatggttgtacagtggggttaggatatgttgatctaactaaacgagctcttgggttagctgaatttcttgatgatagccacttcacaaatttggaatcagctttagttgcacttggttgcaaggaatgccttctgcctgtagagagtgggaaaaccggtgaaatcagagcattacatgatgcattgactcgatgtggtgtgatgttaactgagagaaaaaagagtgaatttaagatgagggatttggttcaggatctcagtcggcttgtcaaaggaactattgaaccagttcgagatttagtttctggatttgagtttgcacctggtgcattgggggcattgctctcttatgcagaactacttgctgatgagagcaattatggaaactataacatccaaagatataatcttgataactatatgaggttggattctgctgctatgagggcacttaatatcctggaaagcaaaactgatgcaaacaaaaatttcagtttgtttggtcttctgaatagaacctgtactgctggaatgggtaaacgattactgcacatgtggctaaaacagcctttattagatgtacaggaaatcaattccaggttagatttggtacaaacatttgtggaggatcctgcgcttcgccaagatctgaggcagcatctgaaacgaatctcagacattgaacgactggtgcacagtcttgagaagaaaagagctggtttgcagcatgttgtaaaactttatcaggtagaacttattacagatttattattttgtcagattctttgcattggtgttgttggtttaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

423

Amino Acids

47.51

Weight (kDa)

6.05

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18524
fragaria_vesca	FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700
malus_domestica	MD06G1211200.v1.1 MD14G1221900.v1.1
prunus_persica	Prupe.5G217300_v2.0.a1 Prupe.5G217300_v2.0.a1
pyrus_communis	pycom06g18850 pycom14g18350
rosa_chinensis	RchiOBHm_Chr7g0184631
rosa_laevigata	RLG00000004964
rosa_multiflora	Rmu_co8151106.1_g000001 Rmu_co8372741.1_g000001 Rmu_sc0009731.1_g000001 Rmu_sc0030268.1_g000001 Rmu_ssc0000289.1_g000029
rosa_roxburghii	Rroxscaffold_3G00269470
rosa_samantha	Rh7AG078900 Rh7BG068400 Rh7CG069200 Rh7DG068500
rosa_wichuraiana	Rw7G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	34
AclWI	GGATC	5 cut(s)	12, 229, 720, 1082, 1095
AcsI	RAATTY	4 cut(s)	521, 547, 686, 946
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	5 cut(s)	190, 469, 982, 1041, 1071
AflIII	ACRYGT	2 cut(s)	258, 1011
AgeI	ACCGGT	1 cut(s)	614
AgsI	TTSAA	4 cut(s)	85, 266, 743, 1142
AjnI	CCWGG	4 cut(s)	364, 781, 918, 1055
AluBI	AGCT	6 cut(s)	40, 110, 506, 518, 560, 1175
AluI	AGCT	6 cut(s)	40, 110, 506, 518, 560, 1175
Alw21I	GWGCWC	2 cut(s)	508, 1155
Alw26I	GTCTC	1 cut(s)	337
Alw44I	GTGCAC	1 cut(s)	1151
AlwI	GGATC	5 cut(s)	12, 229, 720, 1082, 1095
AlwNI	CAGNNNCTG	1 cut(s)	1120
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	1151
ApeKI	GCWGC	3 cut(s)	896, 1114, 1183
ApoI	RAATTY	4 cut(s)	521, 547, 686, 946
AsiGI	ACCGGT	1 cut(s)	614
Asp700I	GAANNNNTTC	2 cut(s)	588, 747
AspLEI	GCGC	1 cut(s)	1096
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	164, 629
AsuII	TTCGAA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	2 cut(s)	910, 1155
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BamHI	GGATCC	2 cut(s)	4, 1087
BanII	GRGCYC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	956
Bbv12I	GWGCWC	2 cut(s)	508, 1155
BbvI	GCAGC	3 cut(s)	883, 1126, 1195
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	4 cut(s)	366, 783, 920, 1057
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	3 cut(s)	897, 1115, 1184
BlsI	GCNGC	3 cut(s)	898, 1116, 1185
Bme1390I	CCNGG	4 cut(s)	366, 783, 920, 1057
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	6, 1089
BmrFI	CCNGG	4 cut(s)	366, 783, 920, 1057
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	5 cut(s)	40, 402, 628, 925, 1126
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	4 cut(s)	48, 319, 332, 1181
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	2 cut(s)	34, 614
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	5 cut(s)	216, 237, 294, 746, 1152
Bse3DI	GCAATG	2 cut(s)	168, 797
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	4 cut(s)	366, 783, 920, 1057
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	852
BseMI	GCAATG	2 cut(s)	168, 797
BseMII	CTCAG	4 cut(s)	660, 730, 1100, 1146
BseNI	ACTGG	5 cut(s)	216, 237, 294, 746, 1152
BseSI	GKGCMC	2 cut(s)	910, 1155
BseXI	GCAGC	3 cut(s)	883, 1126, 1195
BsgI	GTGCAG	1 cut(s)	992
BshFI	GGCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	614
BsiHKAI	GWGCWC	2 cut(s)	508, 1155
BsiSI	CCGG	2 cut(s)	35, 615
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	508, 910, 1155
Bsp13I	TCCGGA	1 cut(s)	34
Bsp1407I	TGTACA	2 cut(s)	467, 1039
Bsp143I	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	661, 729, 1101, 1145
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	6, 1089
BspPI	GGATC	5 cut(s)	12, 229, 720, 1082, 1095
BspT104I	TTCGAA	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	168, 797
BsrFI	RCCGGY	1 cut(s)	614
BsrGI	TGTACA	2 cut(s)	467, 1039
BsrI	ACTGG	5 cut(s)	216, 237, 294, 746, 1152
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
Bst2UI	CCWGG	4 cut(s)	366, 783, 920, 1057
Bst4CI	ACNGT	2 cut(s)	472, 1157
BstAPI	GCANNNNNTGC	2 cut(s)	585, 785
BstAUI	TGTACA	2 cut(s)	467, 1039
BstBI	TTCGAA	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	669, 716, 1109, 1132
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	1096
BstKTI	GATC	8 cut(s)	7, 127, 224, 283, 493, 715, 1090, 1108
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
BstMWI	GCNNNNNNNGC	7 cut(s)	566, 585, 785, 794, 905, 1015, 1024
BstNI	CCWGG	4 cut(s)	366, 783, 920, 1057
BstNSI	RCATGY	3 cut(s)	262, 1015, 1190
BstSCI	CCNGG	4 cut(s)	364, 781, 918, 1055
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	2 cut(s)	910, 1155
BstV1I	GCAGC	3 cut(s)	883, 1126, 1195
BstV2I	GAAGAC	1 cut(s)	956
BstX2I	RGATCY	5 cut(s)	4, 221, 712, 1087, 1105
BstYI	RGATCY	5 cut(s)	4, 221, 712, 1087, 1105
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	852
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 244, 477
CaiI	CAGNNNCTG	1 cut(s)	1120
CfoI	GCGC	1 cut(s)	1096
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	5 cut(s)	189, 468, 981, 1040, 1070
CspAI	ACCGGT	1 cut(s)	614
CviAII	CATG	6 cut(s)	98, 149, 259, 635, 1012, 1187
CviQI	GTAC	5 cut(s)	189, 468, 981, 1040, 1070
DdeI	CTNAG	4 cut(s)	669, 716, 1109, 1132
DpnI	GATC	8 cut(s)	6, 126, 223, 282, 492, 714, 1089, 1107
DpnII	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
DraIII	CACNNNGTG	1 cut(s)	785
Ecl136II	GAGCTC	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	506
EcoRII	CCWGG	4 cut(s)	364, 781, 918, 1055
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	6 cut(s)	101, 152, 262, 638, 1015, 1190
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	6 cut(s)	97, 148, 258, 634, 1011, 1186
Fnu4HI	GCNGC	3 cut(s)	897, 1115, 1184
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	3 cut(s)	897, 1115, 1184
GlaI	GCGC	1 cut(s)	1095
GluI	GCNGC	3 cut(s)	897, 1115, 1184
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	35, 615
HhaI	GCGC	1 cut(s)	1096
Hin1II	CATG	6 cut(s)	101, 152, 262, 638, 1015, 1190
Hin6I	GCGC	1 cut(s)	1094
HinP1I	GCGC	1 cut(s)	1094
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	5 cut(s)	554, 646, 890, 1128, 1240
HpaI	GTTAAC	1 cut(s)	666
HpaII	CCGG	2 cut(s)	35, 615
HphI	GGTGA	2 cut(s)	164, 629
Hpy166II	GTNNAC	3 cut(s)	666, 998, 1153
Hpy188I	TCNGA	7 cut(s)	226, 626, 969, 1110, 1122, 1135, 1239
Hpy188III	TCNNGA	9 cut(s)	35, 131, 311, 527, 710, 752, 765, 869, 1160
Hpy8I	GTNNAC	3 cut(s)	666, 998, 1153
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	2 cut(s)	472, 1157
HpyF10VI	GCNNNNNNNGC	7 cut(s)	566, 585, 785, 794, 905, 1015, 1024
HpyF3I	CTNAG	4 cut(s)	669, 716, 1109, 1132
Hsp92II	CATG	6 cut(s)	101, 152, 262, 638, 1015, 1190
HspAI	GCGC	1 cut(s)	1094
Kpn2I	TCCGGA	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	666
Kzo9I	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	3 cut(s)	883, 1126, 1195
LweI	GCATC	5 cut(s)	40, 402, 628, 925, 1126
MabI	ACCWGGT	1 cut(s)	781
MalI	GATC	8 cut(s)	6, 126, 223, 282, 492, 714, 1089, 1107
MboI	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
MboII	GAAGA	5 cut(s)	73, 275, 398, 956, 1177
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	5 cut(s)	4, 221, 712, 1087, 1105
MhlI	GDGCHC	3 cut(s)	508, 910, 1155
MluCI	AATT	9 cut(s)	10, 44, 270, 521, 547, 686, 835, 946, 1051
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	2 cut(s)	320, 867
MnlI	CCTC	8 cut(s)	10, 101, 316, 690, 876, 897, 1078, 1104
Mph1103I	ATGCAT	1 cut(s)	643
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	588, 747
MseI	TTAA	5 cut(s)	42, 665, 690, 912, 1265
MspI	CCGG	2 cut(s)	35, 615
MspR9I	CCNGG	4 cut(s)	366, 783, 920, 1057
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	4 cut(s)	366, 783, 920, 1057
MwoI	GCNNNNNNNGC	7 cut(s)	566, 585, 785, 794, 905, 1015, 1024
NdeII	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
NlaIII	CATG	6 cut(s)	101, 152, 262, 638, 1015, 1190
NlaIV	GGNNCC	2 cut(s)	6, 1089
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	3 cut(s)	262, 1015, 1190
NspV	TTCGAA	1 cut(s)	384
PciI	ACATGT	2 cut(s)	258, 1011
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	2 cut(s)	588, 747
PfeI	GAWTC	4 cut(s)	554, 890, 1128, 1240
PfoI	TCCNGGA	1 cut(s)	918
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	898, 1116, 1185
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PscI	ACATGT	2 cut(s)	258, 1011
Psp124BI	GAGCTC	1 cut(s)	508
Psp6I	CCWGG	4 cut(s)	364, 781, 918, 1055
PspGI	CCWGG	4 cut(s)	364, 781, 918, 1055
PspN4I	GGNNCC	2 cut(s)	6, 1089
PspPI	GGNCC	1 cut(s)	19
PsrI	GAACNNNNNNTAC	2 cut(s)	289, 321
PstNI	CAGNNNCTG	1 cut(s)	1120
PsuI	RGATCY	5 cut(s)	4, 221, 712, 1087, 1105
RsaI	GTAC	5 cut(s)	190, 469, 982, 1041, 1071
RsaNI	GTAC	5 cut(s)	189, 468, 981, 1040, 1070
SacI	GAGCTC	1 cut(s)	508
SaqAI	TTAA	5 cut(s)	42, 665, 690, 912, 1265
SatI	GCNGC	3 cut(s)	897, 1115, 1184
Sau3AI	GATC	8 cut(s)	4, 124, 221, 280, 490, 712, 1087, 1105
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	4 cut(s)	366, 783, 920, 1057
SduI	GDGCHC	3 cut(s)	508, 910, 1155
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	5 cut(s)	40, 402, 628, 925, 1126
SfcI	CTRYAG	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	4 cut(s)	63, 311, 334, 1160
SmoI	CTYRAG	4 cut(s)	63, 311, 334, 1160
Sse9I	AATT	9 cut(s)	10, 44, 270, 521, 547, 686, 835, 946, 1051
SstI	GAGCTC	1 cut(s)	508
StyD4I	CCNGG	4 cut(s)	364, 781, 918, 1055
TaaI	ACNGT	2 cut(s)	472, 1157
TaqI	TCGA	5 cut(s)	15, 115, 384, 649, 751
TasI	AATT	9 cut(s)	10, 44, 270, 521, 547, 686, 835, 946, 1051
TatI	WGTACW	3 cut(s)	467, 980, 1039
TfiI	GAWTC	4 cut(s)	554, 890, 1128, 1240
Tru1I	TTAA	5 cut(s)	42, 665, 690, 912, 1265
Tru9I	TTAA	5 cut(s)	42, 665, 690, 912, 1265
TscAI	CASTG	3 cut(s)	202, 244, 477
TseI	GCWGC	3 cut(s)	896, 1114, 1183
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	202, 244, 477
VneI	GTGCAC	1 cut(s)	1151
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	4 cut(s)	521, 547, 686, 946
XceI	RCATGY	3 cut(s)	262, 1015, 1190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1063
XmnI	GAANNNNTTC	2 cut(s)	588, 747
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.