Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009731.1

Orthogroup ID

OG0006881

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1351

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009731.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgcagtcatgtataaggcttccatacatcaaaagcgccctagagcggtatgatggagagttttcctcgctgatcaaggaaaaatattcggatccccttgcattatggactgatgatggccacttaaataagtttcttgctctagtggaagctgctgttgaccttgatcaactggagaatggagagtacatgatagcgtctagttatgatcctgctctttctgcactaaagaatgagcaagagtcgcttgctcagcagatacacaatttgcataaacaaactgctaaggatcttgatctctctatagataaggccttaaagttagataaaggcacacaatttggacatgtttttagaatcacaaagaaggaagagccaaaaataaggaaaaagctcacaacacaattcattgtcctggaaacccgaaaagatggagtgaaattcactaatactaagcttaaaaagttaggggatcaatatcagagaatacttgaagagtataaaaattgtcagaaagaactggtgaaccgagttgttcacactgcatccactttctcagaggtgttctgtaatgtagctggcttgctttctgaattggacgtgttacttagttttgctgatttggcttctagttgtcctactccttatactaggccactcatcactccatcggatgtgggggatattatactagaagggagtagacatccttgtgtggaggctcaggactgggttaattttatacccaatgattgtaaacttgtaagaggaaagagttggttccaaatcattacagggcctaatatgggtggaaaatccacgtttatccggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

278

Amino Acids

31.47

Weight (kDa)

6.61

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18524
fragaria_vesca	FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700
malus_domestica	MD06G1211200.v1.1 MD14G1221900.v1.1
prunus_persica	Prupe.5G217300_v2.0.a1 Prupe.5G217300_v2.0.a1
pyrus_communis	pycom06g18850 pycom14g18350
rosa_chinensis	RchiOBHm_Chr7g0184631
rosa_laevigata	RLG00000004964
rosa_multiflora	Rmu_co8151106.1_g000001 Rmu_co8372741.1_g000001 Rmu_sc0009731.1_g000001 Rmu_sc0030268.1_g000001 Rmu_ssc0000289.1_g000029
rosa_roxburghii	Rroxscaffold_3G00269470
rosa_samantha	Rh7AG078900 Rh7BG068400 Rh7CG069200 Rh7DG068500
rosa_wichuraiana	Rw7G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	703
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	5 cut(s)	86, 99, 203, 297, 480
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	45, 806
AflIII	ACRYGT	2 cut(s)	346, 600
AgsI	TTSAA	1 cut(s)	494
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	152, 394, 457, 578
AluI	AGCT	4 cut(s)	152, 394, 457, 578
AlwI	GGATC	5 cut(s)	86, 99, 203, 297, 480
AoxI	GGCC	4 cut(s)	118, 312, 653, 797
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	4 cut(s)	47, 110, 425, 676
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	2 cut(s)	72, 166
BfaI	CTAG	6 cut(s)	41, 143, 201, 630, 651, 692
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	797
BmiI	GGNNCC	2 cut(s)	93, 782
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	2 cut(s)	285, 723
Bpu1102I	GCTNAGC	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	294, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 806
Bse1I	ACTGG	3 cut(s)	177, 525, 734
Bse8I	GATNNNNATC	2 cut(s)	294, 477
BseBI	CCWGG	1 cut(s)	416
BseGI	GGATG	3 cut(s)	545, 679, 706
BseJI	GATNNNNATC	2 cut(s)	294, 477
BseLI	CCNNNNNNNGG	2 cut(s)	45, 806
BseMII	CTCAG	3 cut(s)	266, 570, 737
BseNI	ACTGG	3 cut(s)	177, 525, 734
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	120, 314, 655, 799
BsiSI	CCGG	1 cut(s)	829
BslI	CCNNNNNNNGG	2 cut(s)	45, 806
BsnI	GGCC	4 cut(s)	120, 314, 655, 799
Bsp143I	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	4 cut(s)	120, 314, 655, 799
BspCNI	CTCAG	3 cut(s)	265, 569, 736
BspLI	GGNNCC	2 cut(s)	93, 782
BspPI	GGATC	5 cut(s)	86, 99, 203, 297, 480
BspQI	GCTCTTC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	177, 525, 734
BssMI	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
Bst2UI	CCWGG	1 cut(s)	416
Bst6I	CTCTTC	2 cut(s)	366, 489
BstC8I	GCNNGC	3 cut(s)	249, 580, 584
BstDEI	CTNAG	6 cut(s)	252, 285, 453, 556, 608, 723
BstF5I	GGATG	3 cut(s)	545, 679, 706
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	7 cut(s)	75, 94, 169, 211, 292, 298, 475
BstMBI	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 244, 253, 623
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	91, 289
BstYI	RGATCY	2 cut(s)	91, 289
BsuRI	GGCC	4 cut(s)	120, 314, 655, 799
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	545, 679, 706
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	249, 580, 584
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	797
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	9, 190, 347
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	6 cut(s)	252, 285, 453, 556, 608, 723
DpnI	GATC	7 cut(s)	74, 93, 168, 210, 291, 297, 474
DpnII	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	366, 489
EarI	CTCTTC	2 cut(s)	366, 489
Eco147I	AGGCCT	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	12, 193, 350
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	3 cut(s)	8, 189, 346
FbaI	TGATCA	2 cut(s)	72, 166
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	3 cut(s)	532, 686, 693
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	6 cut(s)	41, 143, 201, 630, 651, 692
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	120, 314, 655, 799
HapII	CCGG	1 cut(s)	829
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	12, 193, 350
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	2 cut(s)	242, 357
HpaII	CCGG	1 cut(s)	829
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	5 cut(s)	160, 526, 538, 704, 758
Hpy188I	TCNGA	6 cut(s)	91, 483, 513, 559, 592, 673
Hpy188III	TCNNGA	2 cut(s)	293, 725
Hpy8I	GTNNAC	5 cut(s)	160, 526, 538, 704, 758
HpyAV	CCTTC	2 cut(s)	361, 689
HpyCH4IV	ACGT	2 cut(s)	600, 821
HpyCH4V	TGCA	5 cut(s)	4, 101, 224, 271, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 244, 253, 623
HpyF3I	CTNAG	6 cut(s)	252, 285, 453, 556, 608, 723
HpySE526I	ACGT	2 cut(s)	600, 821
Hsp92II	CATG	3 cut(s)	12, 193, 350
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	2 cut(s)	72, 166
Kzo9I	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	9 cut(s)	158, 225, 401, 428, 506, 564, 710, 715, 780
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	6 cut(s)	41, 143, 201, 630, 651, 692
MaeII	ACGT	2 cut(s)	600, 821
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	7 cut(s)	74, 93, 168, 210, 291, 297, 474
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
MboII	GAAGA	2 cut(s)	383, 506
MflI	RGATCY	2 cut(s)	91, 289
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	7 cut(s)	265, 338, 404, 440, 505, 593, 736
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	76, 553, 712, 761
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	4 cut(s)	125, 317, 459, 735
MslI	CAYNNNNRTG	1 cut(s)	711
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	1 cut(s)	829
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	221, 244, 253, 623
NdeII	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
NlaIII	CATG	3 cut(s)	12, 193, 350
NlaIV	GGNNCC	2 cut(s)	93, 782
NspI	RCATGY	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	314
PciI	ACATGT	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	357
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	93, 782
PspPI	GGNCC	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	91, 289
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	125, 317, 459, 735
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	7 cut(s)	72, 91, 166, 208, 289, 295, 472
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	8 cut(s)	154, 165, 396, 459, 564, 580, 603, 824
SfaNI	GCATC	1 cut(s)	554
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	711
Sse9I	AATT	7 cut(s)	265, 338, 404, 440, 505, 593, 736
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	46
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	6 cut(s)	41, 143, 201, 630, 651, 692
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	414
TaiI	ACGT	2 cut(s)	603, 824
TasI	AATT	7 cut(s)	265, 338, 404, 440, 505, 593, 736
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	4 cut(s)	125, 317, 459, 735
Tru9I	TTAA	4 cut(s)	125, 317, 459, 735
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	6 cut(s)	41, 143, 201, 630, 651, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.