Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004512

Physical Location & Seq

Genomic Coordinates Reverse (-)

23169678 .. 23175151

Gene Structure 5474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAGGAAGATTCCAGGGAAGAGATTCGTAAACAGTCTGATAAGTCAGTTGTAGTTGAGCATAAAGGGAAGGAGAAGGAAACCCCGGATCCAGAAGAAGAACATGATGACATGGAATTAGATAAGAAGAGGCACTTGAATGTTGTTTTTATTGGCCATGTTGATGCTGGAAAGTCCACAACAGGAGGCCAAATACTTTTTCTTAGTGGCCAGGTTGATGATCGTACAATCCAAAAATATGAAAAAGAAGCAAAGGACAAAAGTAGGGAAAGCTGGTATATGGCGTATATTATGGACACCAATGAAGAAGAGAGAGTTAAGGGTAAAACAGTTGAAGTTGGGCGGGCCCACTTTGAAACCGAGACATCAAGATTCACAATTTTGGATGCACCCGGCCACAAAAGTTATGTTCCAAATATGATCAGTGGTGCATCTCAAGCTGATGTAGGAGTACTGGTAATTTCTGCTCGTAAAGGAGAATTTGAAACCGGGTATGAGAGGGGTGGGCAGACCCGTGAACACGTTCAACTTGCTAAGACATTGGGTGTGTCCAAGATGCTTGTTGTTGTAAATAAAATGGATGAGCCCACTGTGAACTGGTCAAAAGAAAGGTACGATGAAATTGTGTCAAAGATGGTACCATTCCTTAAAGCATCAGGCTACAATGTGAAAAAAGATGTGCAATTCCTACCTATATCTGGCCTGATTGGAACAAATATGAAAACCAGATTGGATAAAAGTGTATGTTCGTGGTGGGATGGTCCCTGCCTTTTCGAAGCCCTTGATTCTATTGAAGTTCCTCTACGAGATCCTAAAGGTCCATTCAGGATGCCTATCATAGACAAATTCAAGGACATGGGAACAGTTGTTATGGGCAAAGTGGAATCTGGGTCCGTGCGTGAAGGGGATTCATTGTTTATCATGCCAAACAAGGTCCCAGTGAAGGCTGTTGCTATATACATTGATGAAGATAGGGTGAAACGTGCCGGCCCAGGTGAAAATCTACGGGTTAGATTATCAGGCATTGATGATGAGGATATATTGTCAGGCTTTGTTGTGTCGAGTGTTGCAAAGCCAATACCTGCCGTTACAGAATTTTTCGCCCAGTTGCAGATTCTTGAACTGCTTGACAATGCAATTTTGACGGCTGGTTATAAAGCTGTCCTGCATATTCACTCAATTGTTGAAGAATGTGAGATTATTGAGCTTGTCAGTCAAATTGATCCGAAGACGAAGAAACCTATGAAAAAGCATATACGTTTTGTCAAGAATGGTGCCATTGTTGTGTGCAAAATTCAGGTCAGCAACACGATATGCATTGAGAAGTTTGCGGACTTTCCACAACTAGGGAGGTTTACTCTTCGTACTGAAGGAAAGACTATTGCAGTTGGAAAAGTGATTGACCAACCATCAAATTACCGCAACAATTCAAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002184 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006464 GO:0006479 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0008213 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0018444 GO:0019538 GO:0022411 GO:0032259 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043412 GO:0043414 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

480

Amino Acids

53.67

Weight (kDa)

6.15

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	43 - 245	4e-49	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	287 - 353	2.9e-09	Elongation factor Tu domain 2
GTP_EFTU_D3	PF03143	360 - 467	5.7e-22	Elongation factor Tu C-terminal domain
GTP-eEF1A_C	PF22594	366 - 466	1.5e-30	GTP-eEF1A C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18070 AT1G18070 AT1G18070
fragaria_vesca	FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000
malus_domestica	MD06G1224200.v1.1 MD14G1233200.v1.1
prunus_persica	Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1
pyrus_communis	pycom06g19950
rosa_chinensis	RchiOBHm_Chr7g0178871
rosa_laevigata	RLG00000005398
rosa_multiflora	Rmu_sc0000888.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274490
rosa_rugosa	Rorug06G0420300 Rorug06G0420300 Rorug06G0420400 Rorug06G0420500 Rorug06G0420500 Rorug06G0420500
rosa_samantha	Rh7AG019800 Rh7BG019300 Rh7CG019900 Rh7DG019800
rosa_wichuraiana	Rw7G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
Acc36I	ACCTGC	1 cut(s)	1090
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	2 cut(s)	637, 1274
AciI	CCGC	3 cut(s)	343, 1331, 1420
AclWI	GGATC	4 cut(s)	83, 96, 803, 1217
AcoI	YGGCCR	3 cut(s)	154, 208, 394
AcsI	RAATTY	4 cut(s)	479, 845, 1094, 1293
AcuI	CTGAAG	1 cut(s)	1389
AfaI	GTAC	5 cut(s)	226, 453, 614, 639, 1366
AfiI	CCNNNNNNNGG	3 cut(s)	698, 943, 1346
AflIII	ACRYGT	1 cut(s)	520
AjnI	CCWGG	3 cut(s)	14, 210, 991
AjuI	GAANNNNNNNTTGG	4 cut(s)	183, 215, 713, 745
AluBI	AGCT	4 cut(s)	273, 440, 1160, 1207
AluI	AGCT	4 cut(s)	273, 440, 1160, 1207
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	4 cut(s)	83, 96, 803, 1217
AoxI	GGCC	7 cut(s)	154, 187, 208, 345, 394, 700, 988
ApaI	GGGCCC	1 cut(s)	349
ApoI	RAATTY	4 cut(s)	479, 845, 1094, 1293
ArsI	GACNNNNNNTTYG	2 cut(s)	1284, 1316
Asp700I	GAANNNNTTC	2 cut(s)	24, 522
Asp718I	GGTACC	1 cut(s)	637
AspS9I	GGNCC	7 cut(s)	345, 346, 761, 818, 891, 934, 989
AsuC2I	CCSGG	3 cut(s)	86, 393, 490
AsuHPI	GGTGA	2 cut(s)	988, 1007
AsuII	TTCGAA	1 cut(s)	774
AvaII	GGWCC	4 cut(s)	761, 818, 891, 934
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	2 cut(s)	156, 210
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	2 cut(s)	637, 1274
BanII	GRGCYC	2 cut(s)	349, 588
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BbsI	GAAGAC	1 cut(s)	1235
BccI	CCATC	3 cut(s)	628, 752, 1417
BceAI	ACGGC	2 cut(s)	1070, 1161
BciT130I	CCWGG	3 cut(s)	16, 212, 993
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	3 cut(s)	86, 393, 490
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	1346
BfuAI	ACCTGC	1 cut(s)	1090
BmcAI	AGTACT	1 cut(s)	453
Bme1390I	CCNGG	6 cut(s)	16, 86, 212, 393, 490, 993
Bme18I	GGWCC	4 cut(s)	761, 818, 891, 934
BmgT120I	GGNCC	7 cut(s)	345, 346, 761, 818, 891, 934, 989
BmiI	GGNNCC	7 cut(s)	90, 347, 639, 763, 892, 936, 1276
BmrFI	CCNGG	6 cut(s)	16, 86, 212, 393, 490, 993
BmrI	ACTGGG	2 cut(s)	932, 1099
BmsI	GCATC	6 cut(s)	154, 376, 440, 546, 662, 819
BmuI	ACTGGG	2 cut(s)	932, 1099
BpiI	GAAGAC	1 cut(s)	1235
BplI	GAGNNNNNCTC	2 cut(s)	1342, 1374
Bpu14I	TTCGAA	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	3 cut(s)	86, 393, 490
BsaBI	GATNNNNATC	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	15, 84, 991
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	698, 943, 1346
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	4 cut(s)	459, 602, 938, 1105
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	16, 212, 993
BseDI	CCNNGG	3 cut(s)	15, 84, 991
BseGI	GGATG	4 cut(s)	391, 586, 763, 834
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	3 cut(s)	698, 943, 1346
BseNI	ACTGG	4 cut(s)	459, 602, 938, 1105
BseSI	GKGCMC	1 cut(s)	349
BshFI	GGCC	7 cut(s)	156, 189, 210, 347, 396, 702, 990
BshNI	GGYRCC	2 cut(s)	637, 1274
BsiSI	CCGG	4 cut(s)	86, 393, 489, 987
BslFI	GGGAC	2 cut(s)	747, 920
BslI	CCNNNNNNNGG	3 cut(s)	698, 943, 1346
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	747, 920
BsnI	GGCC	7 cut(s)	156, 189, 210, 347, 396, 702, 990
Bsp119I	TTCGAA	1 cut(s)	774
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	349, 588
Bsp143I	GATC	5 cut(s)	88, 220, 420, 808, 1222
BspACI	CCGC	3 cut(s)	343, 1331, 1420
BspANI	GGCC	7 cut(s)	156, 189, 210, 347, 396, 702, 990
BspLI	GGNNCC	7 cut(s)	90, 347, 639, 763, 892, 936, 1276
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	4 cut(s)	83, 96, 803, 1217
BspT104I	TTCGAA	1 cut(s)	774
BspT107I	GGYRCC	2 cut(s)	637, 1274
BsrFI	RCCGGY	1 cut(s)	986
BsrI	ACTGG	4 cut(s)	459, 602, 938, 1105
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	3 cut(s)	15, 84, 991
BssMI	GATC	5 cut(s)	88, 220, 420, 808, 1222
Bst2UI	CCWGG	3 cut(s)	16, 212, 993
Bst4CI	ACNGT	4 cut(s)	36, 331, 592, 865
Bst6I	CTCTTC	4 cut(s)	15, 122, 303, 1365
BstBI	TTCGAA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	345, 988
BstDEI	CTNAG	2 cut(s)	203, 534
BstF5I	GGATG	4 cut(s)	391, 586, 763, 834
BstKTI	GATC	5 cut(s)	91, 223, 423, 811, 1225
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	5 cut(s)	88, 220, 420, 808, 1222
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	3 cut(s)	16, 212, 993
BstSCI	CCNGG	6 cut(s)	14, 84, 210, 391, 488, 991
BstSLI	GKGCMC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	1235
BstX2I	RGATCY	2 cut(s)	88, 808
BstYI	RGATCY	2 cut(s)	88, 808
BsuRI	GGCC	7 cut(s)	156, 189, 210, 347, 396, 702, 990
BtsCI	GGATG	4 cut(s)	391, 586, 763, 834
BtsIMutI	CAGTG	3 cut(s)	430, 588, 945
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	2 cut(s)	345, 988
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	7 cut(s)	345, 346, 761, 818, 891, 934, 989
Csp6I	GTAC	5 cut(s)	225, 452, 613, 638, 1365
CviAII	CATG	5 cut(s)	104, 112, 158, 856, 922
CviQI	GTAC	5 cut(s)	225, 452, 613, 638, 1365
DdeI	CTNAG	2 cut(s)	203, 534
DpnI	GATC	5 cut(s)	90, 222, 422, 810, 1224
DpnII	GATC	5 cut(s)	88, 220, 420, 808, 1222
EaeI	YGGCCR	3 cut(s)	154, 208, 394
Eam1104I	CTCTTC	4 cut(s)	15, 122, 303, 1365
EarI	CTCTTC	4 cut(s)	15, 122, 303, 1365
Eco24I	GRGCYC	2 cut(s)	349, 588
Eco47I	GGWCC	4 cut(s)	761, 818, 891, 934
Eco57I	CTGAAG	1 cut(s)	1389
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRII	CCWGG	3 cut(s)	14, 210, 991
EcoT22I	ATGCAT	1 cut(s)	1319
EcoT38I	GRGCYC	2 cut(s)	349, 588
FaeI	CATG	5 cut(s)	107, 115, 161, 859, 925
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	747, 920
FatI	CATG	5 cut(s)	103, 111, 157, 855, 921
FauI	CCCGC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	420
FokI	GGATG	4 cut(s)	398, 593, 770, 841
FriOI	GRGCYC	2 cut(s)	349, 588
FspBI	CTAG	1 cut(s)	1346
HaeIII	GGCC	7 cut(s)	156, 189, 210, 347, 396, 702, 990
HapII	CCGG	4 cut(s)	86, 393, 489, 987
Hin1II	CATG	5 cut(s)	107, 115, 161, 859, 925
HinfI	GANTC	7 cut(s)	11, 25, 372, 785, 884, 908, 1114
HpaII	CCGG	4 cut(s)	86, 393, 489, 987
HphI	GGTGA	2 cut(s)	988, 1007
Hpy166II	GTNNAC	5 cut(s)	32, 177, 518, 595, 1356
Hpy188I	TCNGA	2 cut(s)	40, 1227
Hpy188III	TCNNGA	5 cut(s)	92, 369, 826, 1118, 1267
Hpy8I	GTNNAC	5 cut(s)	32, 177, 518, 595, 1356
HpyAV	CCTTC	5 cut(s)	64, 70, 896, 937, 1364
HpyCH4III	ACNGT	4 cut(s)	36, 331, 592, 865
HpyCH4IV	ACGT	3 cut(s)	522, 982, 1258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	203, 534
HpySE526I	ACGT	3 cut(s)	522, 982, 1258
Hsp92II	CATG	5 cut(s)	107, 115, 161, 859, 925
KpnI	GGTACC	1 cut(s)	641
KroI	GCCGGC	1 cut(s)	986
KroNI	GCCGGC	1 cut(s)	988
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	5 cut(s)	88, 220, 420, 808, 1222
LweI	GCATC	6 cut(s)	154, 376, 440, 546, 662, 819
MaeI	CTAG	1 cut(s)	1346
MaeII	ACGT	3 cut(s)	522, 982, 1258
MaeIII	GTNAC	1 cut(s)	1087
MalI	GATC	5 cut(s)	90, 222, 422, 810, 1224
MboI	GATC	5 cut(s)	88, 220, 420, 808, 1222
MfeI	CAATTG	1 cut(s)	1179
MflI	RGATCY	2 cut(s)	88, 808
MhlI	GDGCHC	2 cut(s)	349, 588
MlsI	TGGCCA	2 cut(s)	156, 210
MluNI	TGGCCA	2 cut(s)	156, 210
MmeI	TCCRAC	1 cut(s)	1369
MnlI	CCTC	6 cut(s)	123, 179, 492, 810, 1027, 1344
Mox20I	TGGCCA	2 cut(s)	156, 210
Mph1103I	ATGCAT	1 cut(s)	1319
MroNI	GCCGGC	1 cut(s)	986
MroXI	GAANNNNTTC	2 cut(s)	24, 522
MscI	TGGCCA	2 cut(s)	156, 210
MseI	TTAA	3 cut(s)	318, 648, 1438
MslI	CAYNNNNRTG	3 cut(s)	138, 162, 1283
Msp20I	TGGCCA	2 cut(s)	156, 210
MspI	CCGG	4 cut(s)	86, 393, 489, 987
MspR9I	CCNGG	6 cut(s)	16, 86, 212, 393, 490, 993
MunI	CAATTG	1 cut(s)	1179
MvaI	CCWGG	3 cut(s)	16, 212, 993
MwoI	GCNNNNNNNGC	1 cut(s)	437
NaeI	GCCGGC	1 cut(s)	988
NciI	CCSGG	3 cut(s)	86, 393, 490
NdeII	GATC	5 cut(s)	88, 220, 420, 808, 1222
NgoMIV	GCCGGC	1 cut(s)	986
NlaIII	CATG	5 cut(s)	107, 115, 161, 859, 925
NlaIV	GGNNCC	7 cut(s)	90, 347, 639, 763, 892, 936, 1276
NsiI	ATGCAT	1 cut(s)	1319
NspV	TTCGAA	1 cut(s)	774
PdiI	GCCGGC	1 cut(s)	988
PdmI	GAANNNNTTC	2 cut(s)	24, 522
PfeI	GAWTC	7 cut(s)	11, 25, 372, 785, 884, 908, 1114
PpuMI	RGGWCCY	1 cut(s)	934
PsiI	TTATAA	1 cut(s)	1155
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	3 cut(s)	14, 210, 991
PspGI	CCWGG	3 cut(s)	14, 210, 991
PspN4I	GGNNCC	7 cut(s)	90, 347, 639, 763, 892, 936, 1276
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	7 cut(s)	345, 346, 761, 818, 891, 934, 989
PspPPI	RGGWCCY	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	88, 808
RsaI	GTAC	5 cut(s)	226, 453, 614, 639, 1366
RsaNI	GTAC	5 cut(s)	225, 452, 613, 638, 1365
RseI	CAYNNNNRTG	3 cut(s)	138, 162, 1283
SaqAI	TTAA	3 cut(s)	318, 648, 1438
Sau3AI	GATC	5 cut(s)	88, 220, 420, 808, 1222
Sau96I	GGNCC	7 cut(s)	345, 346, 761, 818, 891, 934, 989
ScaI	AGTACT	1 cut(s)	453
ScrFI	CCNGG	6 cut(s)	16, 86, 212, 393, 490, 993
SduI	GDGCHC	2 cut(s)	349, 588
SfaNI	GCATC	6 cut(s)	154, 376, 440, 546, 662, 819
SfuI	TTCGAA	1 cut(s)	774
SinI	GGWCC	4 cut(s)	761, 818, 891, 934
SmiMI	CAYNNNNRTG	3 cut(s)	138, 162, 1283
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SsiI	CCGC	3 cut(s)	343, 1331, 1420
SspMI	CTAG	1 cut(s)	1346
StyD4I	CCNGG	6 cut(s)	14, 84, 210, 391, 488, 991
TaaI	ACNGT	4 cut(s)	36, 331, 592, 865
TaiI	ACGT	3 cut(s)	525, 985, 1261
TaqI	TCGA	2 cut(s)	774, 1061
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	7 cut(s)	11, 25, 372, 785, 884, 908, 1114
Tru1I	TTAA	3 cut(s)	318, 648, 1438
Tru9I	TTAA	3 cut(s)	318, 648, 1438
TscAI	CASTG	3 cut(s)	430, 595, 945
TspDTI	ATGAA	7 cut(s)	255, 318, 633, 734, 900, 981, 1259
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	3 cut(s)	430, 595, 945
VpaK11BI	GGWCC	4 cut(s)	761, 818, 891, 934
XapI	RAATTY	4 cut(s)	479, 845, 1094, 1293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmnI	GAANNNNTTC	2 cut(s)	24, 522
XspI	CTAG	1 cut(s)	1346
ZrmI	AGTACT	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.