pycom06g21200

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
23913206 .. 23915149
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21200.6

Sequence Viewer

Length: 1314 bp
ATGGAGTACGGCAGCGGAGGCGGTGGCTCTGGTAGTGGAGACCACCACGACGAGGCATCCGGCTCTCAGAGAAGGAAGAAGCGCTACCACCGCCACACTACTCACCAGATTCAGAGGCTTGAAGGAATGTATAAGGAGTGCCCTCACCCAGATGAAAAGCAGAGGATGCAGTTGAGCAGAGAGTTGGGTTTGGCTCCTCGCCAGATCAAATTTTGGTTTCAAAACCGCAGGACCCAGATGAAGGCGCAAAACGAAAGAGCAGATAACTCCGCGCTTCGAGCAGAGAACGACAAGATCCGATGCGAGAACATTGCAATCAGAGAGGCCCTCAAGAATGTGATTTGCCCCTCTTGCGGTGTCCCTCCGCTCAACGAAGATTCCTACTTTGACGAACATAAATTGCGAATGGAGAATGCCCAATTGAAAGAAGAGTTAGATAGAGTGTCTAGTATTGCTGCAAAATACATTGGGAGGCCAATTTCCCAGCTCTCACCAGTTCAGCCTATTCATATTTCGTCTTTGGACTTATCAATGGCAAGTTTTGGGGGCCATGGGATGGCCGGACCTTCGCTTGATCTTGATCTTCTACCTGGGAGTGCTTCATCTTCCATGCCCAATTTACCTTACCAGCCTAATGGGTTTTCGGACATAGATAAGTCCCTCATGACTGACATTGCTGCAAATGCCATGGAAGAGTTGCTTAGTCTTTTGCAGACCAATGAACCCTTGTGGATGAAGTCTTCTACTGATGGGAGGGATGTTCTTAATCTCGAAACCTACGAGAGGAATTTTCCGAGGGCTAATAGTCATTTGAAAAACCCCAATGTTAGAATTGAAGCATCAAGAGATTCTGGTGTGGTTATCATGAATGGTTTAGCATTAGTAGACATGTTTATGGACCCGAACAAATTTGGAGAGCTATTTCCAACAATTGTCTCAATGGCAAGAACAATCGAAGTAATATCATCTGGAATGTTGGGAAGTCATAGTGGCTCTTTGCAGTTGATGTACAACGAGTTGCAAGTGCTTTCGCCATTGGTACCAACTCGGGAGTTCTACTTCCTTCGTTATTGTCAGCAAATCGAGCAAGGCCTGTGGATAATTGTTGATGTTTCTTACGATTTTCCACAAGATAACCAGTTTACAAGCCAGTGTCGATCTCATAGGCTTCCTTCCGGGTGCTTGATTCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGGTGGAACATGTGGAAATAGAAGACAAAGTTCCAACTCATCGGATTTATAGAGATCGATCCTGCTTGTGTTGGTTATTCACAGCGGATTAG

Protein Analysis

438

Amino Acids

49.5

Weight (kDa)

5.99

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1039
AccB1I GGYRCC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 367
AccI GTMKAC 1 cut(s) 885
AccII CGCG 1 cut(s) 272
AciI CCGC 8 cut(s) 15, 21, 91, 226, 270, 354, 365, 1307
AclWI GGATC 2 cut(s) 289, 1275
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 209, 787, 908
AfaI GTAC 3 cut(s) 8, 1010, 1041
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 52, 241, 353, 556, 783
AflIII ACRYGT 2 cut(s) 888, 1231
AgsI TTSAA 6 cut(s) 122, 221, 424, 814, 836, 1190
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 2 cut(s) 487, 919
AluI AGCT 2 cut(s) 487, 919
Alw26I GTCTC 2 cut(s) 33, 940
AlwI GGATC 2 cut(s) 289, 1275
Ama87I CYCGRG 1 cut(s) 1047
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 5 cut(s) 324, 473, 547, 558, 1090
ApeKI GCWGC 3 cut(s) 12, 455, 677
ApoI RAATTY 3 cut(s) 209, 787, 908
Asp718I GGTACC 1 cut(s) 1039
AspLEI GCGC 3 cut(s) 84, 247, 274
AspS9I GGNCC 5 cut(s) 231, 325, 547, 563, 898
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 3 cut(s) 95, 137, 483
AvaI CYCGRG 1 cut(s) 1047
AvaII GGWCC 3 cut(s) 231, 563, 898
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 1039
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BbsI GAAGAC 2 cut(s) 732, 1251
BbvI GCAGC 3 cut(s) 24, 442, 664
BccI CCATC 2 cut(s) 550, 743
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 2 cut(s) 33, 940
BfaI CTAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 3 cut(s) 13, 456, 678
BlsI GCNGC 3 cut(s) 14, 457, 679
Bme1390I CCNGG 2 cut(s) 591, 1177
Bme18I GGWCC 3 cut(s) 231, 563, 898
BmeT110I CYCGRG 1 cut(s) 1047
BmgT120I GGNCC 5 cut(s) 231, 325, 547, 563, 898
BmiI GGNNCC 5 cut(s) 195, 233, 548, 900, 1041
BmrFI CCNGG 2 cut(s) 591, 1177
BmsI GCATC 4 cut(s) 65, 156, 290, 848
BpiI GAAGAC 2 cut(s) 732, 1251
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 1177
Bsa29I ATCGAT 1 cut(s) 1279
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 550, 590, 687, 794, 1212
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 241, 353, 556, 783
Bse1I ACTGG 3 cut(s) 494, 1138, 1150
Bse3DI GCAATG 2 cut(s) 309, 672
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 1279
BseDI CCNNGG 5 cut(s) 550, 590, 687, 794, 1212
BseGI GGATG 5 cut(s) 56, 171, 561, 738, 763
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 5 cut(s) 52, 241, 353, 556, 783
BseMI GCAATG 2 cut(s) 309, 672
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 3 cut(s) 494, 1138, 1150
BseRI GAGGAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 3 cut(s) 24, 442, 664
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 5 cut(s) 326, 475, 549, 560, 1092
BshNI GGYRCC 1 cut(s) 1039
BshVI ATCGAT 1 cut(s) 1279
BsiHKCI CYCGRG 1 cut(s) 1047
BsiSI CCGG 3 cut(s) 60, 561, 1176
BslFI GGGAC 2 cut(s) 344, 643
BslI CCNNNNNNNGG 5 cut(s) 52, 241, 353, 556, 783
BsmAI GTCTC 2 cut(s) 33, 940
BsmFI GGGAC 2 cut(s) 344, 643
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 5 cut(s) 326, 475, 549, 560, 1092
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 1047
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
Bsp19I CCATGG 2 cut(s) 550, 687
BspACI CCGC 8 cut(s) 15, 21, 91, 226, 270, 354, 365, 1307
BspANI GGCC 5 cut(s) 326, 475, 549, 560, 1092
BspCNI CTCAG 1 cut(s) 79
BspDI ATCGAT 1 cut(s) 1279
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 2 cut(s) 663, 864
BspLI GGNNCC 5 cut(s) 195, 233, 548, 900, 1041
BspPI GGATC 2 cut(s) 289, 1275
BspT107I GGYRCC 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 2 cut(s) 309, 672
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 3 cut(s) 494, 1138, 1150
BssECI CCNNGG 5 cut(s) 550, 590, 687, 794, 1212
BssMI GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
BssT1I CCWWGG 3 cut(s) 550, 687, 1212
Bst2UI CCWGG 1 cut(s) 591
Bst6I CTCTTC 2 cut(s) 423, 687
BstAPI GCANNNNNTGC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 1008
BstDEI CTNAG 2 cut(s) 66, 701
BstDSI CCRYGG 2 cut(s) 550, 687
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 5 cut(s) 56, 171, 561, 738, 763
BstFNI CGCG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 3 cut(s) 84, 247, 274
BstKTI GATC 7 cut(s) 207, 297, 577, 583, 1160, 1279, 1283
BstMAI GTCTC 2 cut(s) 33, 940
BstMBI GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
BstMWI GCNNNNNNNGC 7 cut(s) 18, 90, 166, 278, 351, 683, 1084
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 3 cut(s) 892, 1198, 1235
BstSCI CCNGG 2 cut(s) 589, 1175
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 24, 442, 664
BstV2I GAAGAC 2 cut(s) 732, 1251
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 1279
BsuRI GGCC 5 cut(s) 326, 475, 549, 560, 1092
BsuTUI ATCGAT 1 cut(s) 1279
BtgI CCRYGG 2 cut(s) 550, 687
BtsCI GGATG 5 cut(s) 56, 171, 561, 738, 763
BtsIMutI CAGTG 1 cut(s) 1157
CciI TCATGA 2 cut(s) 663, 864
CfoI GCGC 3 cut(s) 84, 247, 274
Cfr13I GGNCC 5 cut(s) 231, 325, 547, 563, 898
ClaI ATCGAT 1 cut(s) 1279
Csp6I GTAC 3 cut(s) 7, 1009, 1040
CspCI CAANNNNNGTGG 2 cut(s) 1076, 1111
CviAII CATG 8 cut(s) 551, 610, 664, 688, 865, 889, 1195, 1232
CviQI GTAC 3 cut(s) 7, 1009, 1040
DdeI CTNAG 2 cut(s) 66, 701
DpnI GATC 7 cut(s) 206, 296, 576, 582, 1159, 1278, 1282
DpnII GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 423, 687
EarI CTCTTC 2 cut(s) 423, 687
Eco130I CCWWGG 3 cut(s) 550, 687, 1212
Eco147I AGGCCT 1 cut(s) 1092
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 231, 563, 898
Eco47III AGCGCT 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 1047
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoO109I RGGNCCY 2 cut(s) 231, 325
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 550, 687, 1212
ErhI CCWWGG 3 cut(s) 550, 687, 1212
FaeI CATG 8 cut(s) 554, 613, 667, 691, 868, 892, 1198, 1235
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 2 cut(s) 344, 643
FatI CATG 8 cut(s) 550, 609, 663, 687, 864, 888, 1194, 1231
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 13, 456, 678
FokI GGATG 5 cut(s) 43, 178, 568, 745, 770
Fsp4HI GCNGC 3 cut(s) 13, 456, 678
FspBI CTAG 1 cut(s) 447
GlaI GCGC 3 cut(s) 83, 246, 273
GluI GCNGC 3 cut(s) 13, 456, 678
GsaI CCCAGC 1 cut(s) 487
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 5 cut(s) 326, 475, 549, 560, 1092
HapII CCGG 3 cut(s) 60, 561, 1176
HhaI GCGC 3 cut(s) 84, 247, 274
Hin1II CATG 8 cut(s) 554, 613, 667, 691, 868, 892, 1198, 1235
Hin6I GCGC 3 cut(s) 82, 245, 272
HinP1I GCGC 3 cut(s) 82, 245, 272
HinfI GANTC 4 cut(s) 109, 377, 848, 1186
HpaII CCGG 3 cut(s) 60, 561, 1176
HphI GGTGA 3 cut(s) 95, 137, 483
Hpy166II GTNNAC 2 cut(s) 886, 1143
Hpy188I TCNGA 7 cut(s) 69, 114, 299, 320, 646, 795, 1266
Hpy188III TCNNGA 9 cut(s) 331, 578, 664, 770, 843, 865, 969, 1049, 1190
Hpy8I GTNNAC 2 cut(s) 886, 1143
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 6 cut(s) 66, 116, 235, 576, 1073, 1182
HpyCH4V TGCA 7 cut(s) 169, 314, 458, 680, 712, 1000, 1021
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 90, 166, 278, 351, 683, 1084
HpyF3I CTNAG 2 cut(s) 66, 701
Hsp92II CATG 8 cut(s) 554, 613, 667, 691, 868, 892, 1198, 1235
HspAI GCGC 3 cut(s) 82, 245, 272
KpnI GGTACC 1 cut(s) 1043
Kzo9I GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 24, 442, 664
LweI GCATC 4 cut(s) 65, 156, 290, 848
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 1216
MalI GATC 7 cut(s) 206, 296, 576, 582, 1159, 1278, 1282
MbiI CCGCTC 1 cut(s) 367
MboI GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
MboII GAAGA 8 cut(s) 88, 386, 440, 575, 597, 704, 732, 1256
MfeI CAATTG 2 cut(s) 419, 930
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 950, 1280
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 2 cut(s) 150, 893
MspA1I CMGCKG 2 cut(s) 15, 1307
MspI CCGG 3 cut(s) 60, 561, 1176
MspR9I CCNGG 2 cut(s) 591, 1177
MunI CAATTG 2 cut(s) 419, 930
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 7 cut(s) 18, 90, 166, 278, 351, 683, 1084
NciI CCSGG 1 cut(s) 1177
NcoI CCATGG 2 cut(s) 550, 687
NdeII GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
NlaIII CATG 8 cut(s) 554, 613, 667, 691, 868, 892, 1198, 1235
NlaIV GGNNCC 5 cut(s) 195, 233, 548, 900, 1041
NspI RCATGY 3 cut(s) 892, 1198, 1235
PagI TCATGA 2 cut(s) 663, 864
PceI AGGCCT 1 cut(s) 1092
PciI ACATGT 2 cut(s) 888, 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 4 cut(s) 109, 377, 848, 1186
PflMI CCANNNNNTGG 1 cut(s) 556
PkrI GCNGC 3 cut(s) 14, 457, 679
PpuMI RGGWCCY 1 cut(s) 231
PscI ACATGT 2 cut(s) 888, 1231
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 483
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 5 cut(s) 195, 233, 548, 900, 1041
PspPI GGNCC 5 cut(s) 231, 325, 547, 563, 898
PspPPI RGGWCCY 1 cut(s) 231
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 3 cut(s) 8, 1010, 1041
RsaNI GTAC 3 cut(s) 7, 1009, 1040
RseI CAYNNNNRTG 2 cut(s) 150, 893
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 3 cut(s) 13, 456, 678
Sau3AI GATC 7 cut(s) 204, 294, 574, 580, 1157, 1276, 1280
Sau96I GGNCC 5 cut(s) 231, 325, 547, 563, 898
ScrFI CCNGG 2 cut(s) 591, 1177
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 489, 568, 592, 625, 779, 921, 1218
SfaNI GCATC 4 cut(s) 65, 156, 290, 848
SinI GGWCC 3 cut(s) 231, 563, 898
SmiMI CAYNNNNRTG 2 cut(s) 150, 893
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 1092
SsiI CCGC 8 cut(s) 15, 21, 91, 226, 270, 354, 365, 1307
SspMI CTAG 1 cut(s) 447
StuI AGGCCT 1 cut(s) 1092
StyD4I CCNGG 2 cut(s) 589, 1175
StyI CCWWGG 3 cut(s) 550, 687, 1212
TaqI TCGA 6 cut(s) 277, 771, 954, 1083, 1156, 1279
TatI WGTACW 1 cut(s) 1008
TfiI GAWTC 4 cut(s) 109, 377, 848, 1186
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 1 cut(s) 1157
TseI GCWGC 3 cut(s) 12, 455, 677
TspDTI ATGAA 7 cut(s) 168, 254, 497, 591, 735, 749, 881
TspRI CASTG 1 cut(s) 1157
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 3 cut(s) 231, 563, 898
XagI CCTNNNNNAGG 1 cut(s) 781
XapI RAATTY 3 cut(s) 209, 787, 908
XceI RCATGY 3 cut(s) 892, 1198, 1235
XmiI GTMKAC 1 cut(s) 885
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.