pycom14g20460

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
21515627 .. 21517518
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20460.6

Sequence Viewer

Length: 1332 bp
ATGGAGTACGGCAGAGGAGGCGGTGGCTCTGGTGGCGGAGACCACCGCGACGACGCCTCCGGCTCTCAAAGAAGGAAGAAGCGCTACCACCGTCACACTGCTCACCAGATTCAGAGGCTTGAAGGAATGTATAAGGAGTGCCCTCACCCGGATGAAAAGCAGAGGATGCAGTTGAGCAGAGAGTTGGGTTTGGCTCCTCGCCAGATCAAATTTTGGTTTCAAAACCGCCGGACCCAGATGAAGGCGCAAAACGAAAGAGCGGACAACTGCGCACTTCGAGCAGAGAACGACAAGATCCGATGCGAAAACATTGCAATCAGAGAGGCCCTCAAGAATGTCATTTGCCCCTCTTGCGGTGTCCCTCCACTCAACGAAGATTCCTACTTTGATGAACAGAAATTGCAAATGGAGAATGCGCAATTGAAACAAGAGCTAGATAGAGTGTCTAGTATTGCTGCAAAATACATTGGGAGGCCAATTTCCCAGCTCCCACCAGTGCAGCCTATTCATATTTCATCTTTGGACTTATCAATGGCAAGTTTTGGGGGCCATGGATTGGCTGGCCCTTCTCTTGATCTTGATCTTATTCCGGGGAGTGCTTCATCTACCATGCCCAATTTGCCTTACCAGCCTCCCGGGTTTTCGGACATGGATAAGTCCCTCATGACTGACATTGCTGCAAATGCCATGGCAGAGTTGCTTAGGCTTCTGCAGACCAATGAACCTTTGTGGATGAAGTCTTCTACTGATGGGAGGGATGTTCTTAATCTTGAAACCTATGAGAGGATTTTTCCGAGGGCTACTAGTCATTCGAAAAACTCCTATGTCAGAATTGAAGCATCACGAGATTCTGGTGTGGTTATCATGAGTGGTTTAGCATTAGTTGACATGTTTATTGACCTGAACAAATTTGCGGAGCTGTTTCCAACAATTGTCTCAATGGCAAGAATAATCGAAGTAATATCATCTGGAATGTTGGGTGGTCATGGCTCTTTGCAGTTGATGTACAACGAGTTGCAAGTGCTTTCGCCATTGGTACCAACTCGGGAGTTCTACTTCCTTCGGTATTGTCAGCAAATCGAACAAGGCCTGTGGGCAATTGTCGATGTCTCTTACAATTTTCCACAAGATAATCAGTTTGCAAACCAATGTCGATCTCATAGGCTTCCTTCTGGGTGCTTGATTCAAGACATGCCAAATGGATATTCCAAGGTTTGTTTCACAAGCAAAAAGTACTTTTTTCTGCATGTGAAAGGTAATGGTAATATCTTCACTTACTTCCTCATATCATTGCGAAAAAATAGGTTACTTGGGTGGAACATGTGGAAATAG

Protein Analysis

444

Amino Acids

50.2

Weight (kDa)

8.73

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 271, 417
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 260
AccII CGCG 1 cut(s) 48
AciI CCGC 7 cut(s) 21, 36, 46, 226, 260, 354, 914
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 2 cut(s) 209, 908
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 4 cut(s) 8, 1007, 1038, 1235
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 148, 241, 353, 556, 783
AflIII ACRYGT 2 cut(s) 888, 1320
AgsI TTSAA 6 cut(s) 122, 221, 424, 773, 836, 1187
AhlI ACTAGT 1 cut(s) 803
AjuI GAANNNNNNNTTGG 4 cut(s) 1189, 1202, 1221, 1234
AluBI AGCT 3 cut(s) 433, 487, 919
AluI AGCT 3 cut(s) 433, 487, 919
Alw26I GTCTC 3 cut(s) 33, 940, 1114
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 2 cut(s) 635, 1044
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 5 cut(s) 324, 473, 547, 562, 1087
ApeKI GCWGC 3 cut(s) 455, 499, 677
ApoI RAATTY 2 cut(s) 209, 908
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 4 cut(s) 84, 247, 272, 418
AspS9I GGNCC 4 cut(s) 231, 325, 547, 563
AsuC2I CCSGG 4 cut(s) 149, 591, 636, 637
AsuHPI GGTGA 2 cut(s) 95, 137
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 2 cut(s) 635, 1044
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 1036
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 442, 511, 664
BccI CCATC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 4 cut(s) 149, 591, 636, 637
BcoDI GTCTC 3 cut(s) 33, 940, 1114
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 3 cut(s) 434, 447, 804
BfmI CTRYAG 1 cut(s) 710
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 3 cut(s) 456, 500, 678
BlsI GCNGC 3 cut(s) 457, 501, 679
BmcAI AGTACT 1 cut(s) 1235
Bme1390I CCNGG 4 cut(s) 149, 591, 636, 637
Bme18I GGWCC 1 cut(s) 231
BmeT110I CYCGRG 2 cut(s) 635, 1044
BmgT120I GGNCC 4 cut(s) 231, 325, 547, 563
BmiI GGNNCC 4 cut(s) 195, 233, 548, 1038
BmrFI CCNGG 4 cut(s) 149, 591, 636, 637
BmsI GCATC 3 cut(s) 156, 290, 848
BpiI GAAGAC 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 312, 344
Bpu10I CCTNAGC 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 4 cut(s) 149, 591, 636, 637
BsaBI GATNNNNATC 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 6 cut(s) 550, 590, 635, 687, 794, 1209
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 241, 353, 556, 783
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 3 cut(s) 309, 672, 1289
Bse8I GATNNNNATC 1 cut(s) 579
BseDI CCNNGG 6 cut(s) 550, 590, 635, 687, 794, 1209
BseGI GGATG 4 cut(s) 157, 171, 738, 763
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 5 cut(s) 148, 241, 353, 556, 783
BseMI GCAATG 3 cut(s) 309, 672, 1289
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 2 cut(s) 30, 186
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 3 cut(s) 442, 511, 664
BseYI CCCAGC 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 326, 475, 549, 564, 1089
BshNI GGYRCC 1 cut(s) 1036
BsiHKCI CYCGRG 2 cut(s) 635, 1044
BsiSI CCGG 5 cut(s) 60, 149, 229, 590, 636
BslFI GGGAC 2 cut(s) 344, 643
BslI CCNNNNNNNGG 5 cut(s) 148, 241, 353, 556, 783
BsmAI GTCTC 3 cut(s) 33, 940, 1114
BsmFI GGGAC 2 cut(s) 344, 643
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 5 cut(s) 326, 475, 549, 564, 1089
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 2 cut(s) 635, 1044
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 1005
Bsp143I GATC 5 cut(s) 204, 294, 574, 580, 1154
Bsp19I CCATGG 2 cut(s) 550, 687
BspACI CCGC 7 cut(s) 21, 36, 46, 226, 260, 354, 914
BspANI GGCC 5 cut(s) 326, 475, 549, 564, 1089
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 2 cut(s) 663, 864
BspLI GGNNCC 4 cut(s) 195, 233, 548, 1038
BspMAI CTGCAG 1 cut(s) 714
BspPI GGATC 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 812
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 3 cut(s) 309, 672, 1289
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 6 cut(s) 550, 590, 635, 687, 794, 1209
BssMI GATC 5 cut(s) 204, 294, 574, 580, 1154
BssNI GRCGYC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 843
BssT1I CCWWGG 3 cut(s) 550, 687, 1209
Bst2BI CACGAG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 1005
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 2 cut(s) 550, 687
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 4 cut(s) 157, 171, 738, 763
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 4 cut(s) 84, 247, 272, 418
BstKTI GATC 5 cut(s) 207, 297, 577, 583, 1157
BstMAI GTCTC 3 cut(s) 33, 940, 1114
BstMBI GATC 5 cut(s) 204, 294, 574, 580, 1154
BstMWI GCNNNNNNNGC 8 cut(s) 18, 33, 166, 278, 351, 619, 628, 683
BstNSI RCATGY 4 cut(s) 892, 1195, 1250, 1324
BstSCI CCNGG 4 cut(s) 147, 589, 634, 635
BstSFI CTRYAG 1 cut(s) 710
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 442, 511, 664
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 5 cut(s) 326, 475, 549, 564, 1089
BtgI CCRYGG 2 cut(s) 550, 687
BtsCI GGATG 4 cut(s) 157, 171, 738, 763
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 501
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 2 cut(s) 663, 864
CfoI GCGC 4 cut(s) 84, 247, 272, 418
Cfr13I GGNCC 4 cut(s) 231, 325, 547, 563
Cfr9I CCCGGG 1 cut(s) 635
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 7, 1006, 1037, 1234
CspCI CAANNNNNGTGG 2 cut(s) 1073, 1108
CviQI GTAC 4 cut(s) 7, 1006, 1037, 1234
DdeI CTNAG 1 cut(s) 701
DpnI GATC 5 cut(s) 206, 296, 576, 582, 1156
DpnII GATC 5 cut(s) 204, 294, 574, 580, 1154
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 550, 687, 1209
Eco147I AGGCCT 1 cut(s) 1089
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 635, 1044
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 325
EcoT14I CCWWGG 3 cut(s) 550, 687, 1209
ErhI CCWWGG 3 cut(s) 550, 687, 1209
FaqI GGGAC 2 cut(s) 344, 643
Fnu4HI GCNGC 3 cut(s) 456, 500, 678
FokI GGATG 4 cut(s) 164, 178, 745, 770
Fsp4HI GCNGC 3 cut(s) 456, 500, 678
FspBI CTAG 3 cut(s) 434, 447, 804
FspI TGCGCA 2 cut(s) 271, 417
GlaI GCGC 4 cut(s) 83, 246, 271, 417
GluI GCNGC 3 cut(s) 456, 500, 678
GsaI CCCAGC 1 cut(s) 487
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 5 cut(s) 326, 475, 549, 564, 1089
HapII CCGG 5 cut(s) 60, 149, 229, 590, 636
HgaI GACGC 1 cut(s) 62
HhaI GCGC 4 cut(s) 84, 247, 272, 418
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 4 cut(s) 82, 245, 270, 416
HinP1I GCGC 4 cut(s) 82, 245, 270, 416
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 4 cut(s) 109, 377, 848, 1183
HpaII CCGG 5 cut(s) 60, 149, 229, 590, 636
HphI GGTGA 2 cut(s) 95, 137
Hpy166II GTNNAC 1 cut(s) 886
Hpy188I TCNGA 6 cut(s) 114, 299, 320, 646, 795, 830
Hpy8I GTNNAC 1 cut(s) 886
Hpy99I CGWCG 2 cut(s) 53, 56
HpyAV CCTTC 6 cut(s) 66, 116, 235, 576, 1070, 1179
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 33, 166, 278, 351, 619, 628, 683
HpyF3I CTNAG 1 cut(s) 701
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 4 cut(s) 82, 245, 270, 416
KpnI GGTACC 1 cut(s) 1040
Kzo9I GATC 5 cut(s) 204, 294, 574, 580, 1154
LmnI GCTCC 3 cut(s) 199, 492, 916
Lsp1109I GCAGC 3 cut(s) 442, 511, 664
LweI GCATC 3 cut(s) 156, 290, 848
MaeI CTAG 3 cut(s) 434, 447, 804
MaeIII GTNAC 2 cut(s) 92, 1305
MalI GATC 5 cut(s) 206, 296, 576, 582, 1156
MbiI CCGCTC 1 cut(s) 260
MboI GATC 5 cut(s) 204, 294, 574, 580, 1154
MboII GAAGA 4 cut(s) 88, 386, 732, 1261
MfeI CAATTG 3 cut(s) 419, 930, 1098
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 950
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 5 cut(s) 60, 149, 229, 590, 636
MspR9I CCNGG 4 cut(s) 149, 591, 636, 637
MunI CAATTG 3 cut(s) 419, 930, 1098
Mva1269I GAATGC 1 cut(s) 418
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 8 cut(s) 18, 33, 166, 278, 351, 619, 628, 683
NciI CCSGG 4 cut(s) 149, 591, 636, 637
NcoI CCATGG 2 cut(s) 550, 687
NdeII GATC 5 cut(s) 204, 294, 574, 580, 1154
NlaIV GGNNCC 4 cut(s) 195, 233, 548, 1038
NmuCI GTSAC 1 cut(s) 92
NsbI TGCGCA 2 cut(s) 271, 417
NspI RCATGY 4 cut(s) 892, 1195, 1250, 1324
NspV TTCGAA 1 cut(s) 812
PagI TCATGA 2 cut(s) 663, 864
PceI AGGCCT 1 cut(s) 1089
PciI ACATGT 2 cut(s) 888, 1320
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 4 cut(s) 109, 377, 848, 1183
PflMI CCANNNNNTGG 1 cut(s) 556
PkrI GCNGC 3 cut(s) 457, 501, 679
PscI ACATGT 2 cut(s) 888, 1320
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 4 cut(s) 195, 233, 548, 1038
PspPI GGNCC 4 cut(s) 231, 325, 547, 563
PstI CTGCAG 1 cut(s) 714
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 4 cut(s) 8, 1007, 1038, 1235
RsaNI GTAC 4 cut(s) 7, 1006, 1037, 1234
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 3 cut(s) 456, 500, 678
Sau3AI GATC 5 cut(s) 204, 294, 574, 580, 1154
Sau96I GGNCC 4 cut(s) 231, 325, 547, 563
ScaI AGTACT 1 cut(s) 1235
ScrFI CCNGG 4 cut(s) 149, 591, 636, 637
SduI GDGCHC 1 cut(s) 143
SetI ASST 9 cut(s) 435, 489, 727, 779, 903, 921, 1215, 1258, 1307
SfaNI GCATC 3 cut(s) 156, 290, 848
SfcI CTRYAG 1 cut(s) 710
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 1 cut(s) 231
SmaI CCCGGG 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 803
SseBI AGGCCT 1 cut(s) 1089
SsiI CCGC 7 cut(s) 21, 36, 46, 226, 260, 354, 914
SspMI CTAG 3 cut(s) 434, 447, 804
StuI AGGCCT 1 cut(s) 1089
StyD4I CCNGG 4 cut(s) 147, 589, 634, 635
StyI CCWWGG 3 cut(s) 550, 687, 1209
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 6 cut(s) 277, 812, 954, 1080, 1104, 1153
TatI WGTACW 2 cut(s) 1005, 1233
TfiI GAWTC 4 cut(s) 109, 377, 848, 1183
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 2 cut(s) 103, 501
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 3 cut(s) 455, 499, 677
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 8 cut(s) 168, 254, 405, 497, 504, 591, 735, 749
TspMI CCCGGG 1 cut(s) 635
TspRI CASTG 2 cut(s) 103, 501
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 781
XapI RAATTY 2 cut(s) 209, 908
XceI RCATGY 4 cut(s) 892, 1195, 1250, 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmaI CCCGGG 1 cut(s) 635
XspI CTAG 3 cut(s) 434, 447, 804
ZrmI AGTACT 1 cut(s) 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.