Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009078

Physical Location & Seq

Genomic Coordinates Reverse (-)

55037548 .. 55038132

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0407000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGATCAAGGAAAATGGCTCAAAGCCCTACAAATGGTTTTTCACTGGTAAGAATATGTTTAAGCTAAACCTCTCTTTCCGTGCTTCAAAACCCAAAAGCCATAGCCCTTCTTTATCTTCATCTCTTCCTACTCAAAATTGTAACAGTGTCGCAAGAAATGAGGAGCTTGCAAAAGTTTTTGATCATTTTGACACCAACAAAGACGGTAAGATCTCAGGCGACGAACTTCAAGCTTACTTCATGTCAATTGGGGAACCCATGTCCACTCATGAGGCTCAAAGTGTGATAAAAGAATTGGACAATGATGGTGATAACTTGTTGGAGTTTGATGACTTCGTCAAATTGATGAGGCGAGAGGATATTGATGCCAATGAAAATGACGATCTAAAGAACGCTTTTGAGATGTTTGAAGTTGATAAAGGTTGCGGATGCATAACACCAAAAGGATTGCAAAACATGTTCAATCGACTAGGAGATGCCAAATCCTATGATGAGTGTGTATCCATGATCGGTGTCTTTGATCTTGACGGAAATGGAGTCCTCGATTTCAATGAATTTCTGAAGATGATGATTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

194

Amino Acids

21.95

Weight (kDa)

4.8

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	55 - 118	2.7e-16	EF-hand domain pair
EF-hand_1	PF00036	56 - 83	3.6e-07	EF hand domain
EF-hand_6	PF13405	56 - 85	1.4e-07	EF-hand domain
EF-hand_5	PF13202	58 - 82	9.4e-07	EF hand
EF-hand_9	PF14658	60 - 119	8e-07	EF-hand domain
EF-hand_7	PF13499	128 - 191	4.4e-07	EF-hand domain pair
EF-hand_8	PF13833	144 - 191	4.8e-06	EF-hand domain pair
EF-hand_1	PF00036	167 - 193	3.5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17920 AT1G17920 AT1G73360
fragaria_vesca	FvH4_5g18090 FvH4_5g18090
malus_domestica	MD06G1236400.v1.1 MD14G1243300.v1.1
prunus_persica	Prupe.5G240900_v2.0.a1
pyrus_communis	pycom06g21200 pycom06g21210 pycom14g20460 pycom15g33770
rosa_chinensis	RchiOBHm_Chr7g0177521
rosa_laevigata	RLG00000005530
rosa_multiflora	Rmu_ssc0000330.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275800
rosa_rugosa	Rorug06G0407000
rosa_samantha	Rh7AG006300 Rh7BG006200 Rh7CG006700 Rh7DG006300
rosa_wichuraiana	Rw7G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	90, 233, 413, 466, 553, 579
AluBI	AGCT	3 cut(s)	67, 169, 236
AluI	AGCT	3 cut(s)	67, 169, 236
ApoI	RAATTY	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	323
BccI	CCATC	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	3 cut(s)	358, 422, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
BspACI	CCGC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
Bst4CI	ACNGT	2 cut(s)	149, 209
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	6 cut(s)	9, 187, 216, 388, 513, 526
BstMBI	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
BstNSI	RCATGY	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	2 cut(s)	45, 154
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	271
CviAII	CATG	6 cut(s)	244, 262, 272, 460, 508, 582
CviJI	RGCY	8 cut(s)	21, 28, 67, 102, 108, 169, 236, 278
CviKI_1	RGCY	8 cut(s)	21, 28, 67, 102, 108, 169, 236, 278
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	6 cut(s)	8, 186, 215, 387, 512, 525
DpnII	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	437
FaeI	CATG	6 cut(s)	247, 265, 275, 463, 511, 585
FatI	CATG	6 cut(s)	243, 261, 271, 459, 507, 581
FbaI	TGATCA	1 cut(s)	184
FokI	GGATG	1 cut(s)	444
FspBI	CTAG	1 cut(s)	473
Hin1II	CATG	6 cut(s)	247, 265, 275, 463, 511, 585
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	540
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	564
Hpy188III	TCNNGA	2 cut(s)	272, 527
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	149, 209
HpyCH4V	TGCA	3 cut(s)	173, 435, 454
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	6 cut(s)	247, 265, 275, 463, 511, 585
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	2 cut(s)	33, 204
LweI	GCATC	3 cut(s)	358, 422, 469
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	6 cut(s)	8, 186, 215, 387, 512, 525
MboI	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
MboII	GAAGA	4 cut(s)	16, 111, 119, 577
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	5 cut(s)	139, 249, 296, 344, 557
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	83, 157, 268, 345, 352, 554
Mph1103I	ATGCAT	1 cut(s)	437
MseI	TTAA	1 cut(s)	63
MunI	CAATTG	1 cut(s)	249
NdeII	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
NlaIII	CATG	6 cut(s)	247, 265, 275, 463, 511, 585
NlaIV	GGNNCC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	437
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
PscI	ACATGT	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	6 cut(s)	6, 184, 213, 385, 510, 523
SchI	GAGTC	1 cut(s)	549
SetI	ASST	5 cut(s)	69, 75, 171, 238, 427
SfaNI	GCATC	3 cut(s)	358, 422, 469
Sse9I	AATT	5 cut(s)	139, 249, 296, 344, 557
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	149, 209
TaqI	TCGA	2 cut(s)	469, 546
TasI	AATT	5 cut(s)	139, 249, 296, 344, 557
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	52, 154
TspDTI	ATGAA	5 cut(s)	17, 111, 232, 390, 570
TspGWI	ACGGA	2 cut(s)	71, 546
TspRI	CASTG	2 cut(s)	52, 154
Tth111I	GACNNNGTC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.