Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009078

Physical Location & Seq

Genomic Coordinates Forward (+)

23915212 .. 23916419

Gene Structure 1208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTTTCAGGAACTTCTACTAGAGATCTTGAAGGAGTGATTCCATCCCCTGAAGGAAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTGAACAACTTCTGCGCAAGCATTAGCTCATCCAACAGACATAGATGGACCACCCTTTCTGGGACGAACGAGATTGGAGTGCGAGTCACCATCCATAAGATCACTGATCCTGGCCAGCCCAATGGCGTGGTTCTTAGTGCGGCTACTACTATTTGGCTCCCCTTATCACCGCAGAATGTCTTCAATTTTTTCAAGGATGAAAGAACTCGACCTCAGTGGGATGTGCTTTCAAATGGCAATGCAGTGCAAGATGTCGCCCACATAGCAAATGGCTCACATCCAGGGAACTGCATATCTGTTCTTCGAGCATTCAACACTAGCCAGAACAACATGTTGATACTCCAACAGAGCTGCATAGACTCATCAGGCTCACTTGTTGTGTACTCCCCTGTTGACCTACCGGCCATAAACATCGCAATGAGCGGTGAGGATCCTTCTTACATTCCTCTGCTGCCCTCAGGGTTCTCCATTTCTCCCGACGGGCGGGCAGATCAAGGGGACTGCGCCTCATCGAGTTCTTGCAATGCAACTGGAAGTGGATCACTAATCACAGTGGCATTTCAAATTCTGGTGAGCAGCTTGCCATCCACTAAACTGAACTTGGAGTCGGTAAATACCGTTAATACCCTAATCGGAAACACTGTGCAGCAAATTAAGACAGCCTTGAATTGCAATAGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

258

Amino Acids

27.29

Weight (kDa)

6.4

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDF2_C	PF25797	16 - 254	3.6e-110	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17920 AT1G17920 AT1G73360
fragaria_vesca	FvH4_5g18090 FvH4_5g18090
malus_domestica	MD06G1236400.v1.1 MD14G1243300.v1.1
prunus_persica	Prupe.5G240900_v2.0.a1
pyrus_communis	pycom06g21200 pycom06g21210 pycom14g20460 pycom15g33770
rosa_chinensis	RchiOBHm_Chr7g0177521
rosa_laevigata	RLG00000005530
rosa_multiflora	Rmu_ssc0000330.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275800
rosa_rugosa	Rorug06G0407000
rosa_samantha	Rh7AG006300 Rh7BG006200 Rh7CG006700 Rh7DG006300
rosa_wichuraiana	Rw7G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	513
AciI	CCGC	4 cut(s)	230, 260, 513, 574
AclWI	GGATC	4 cut(s)	191, 515, 528, 637
AcoI	YGGCCR	2 cut(s)	202, 492
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	150, 573
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	7 cut(s)	32, 274, 283, 321, 403, 653, 757
AjnI	CCWGG	2 cut(s)	199, 370
AluBI	AGCT	4 cut(s)	80, 117, 441, 669
AluI	AGCT	4 cut(s)	80, 117, 441, 669
AlwI	GGATC	4 cut(s)	191, 515, 528, 637
AoxI	GGCC	2 cut(s)	202, 492
ApeKI	GCWGC	4 cut(s)	441, 541, 666, 736
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	2 cut(s)	98, 269
AspLEI	GCGC	2 cut(s)	107, 596
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	103, 169, 249, 527, 673
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	428, 528, 678, 748
BccI	CCATC	5 cut(s)	52, 82, 129, 188, 682
BciT130I	CCWGG	2 cut(s)	201, 372
BfaI	CTAG	3 cut(s)	21, 77, 408
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	5 cut(s)	231, 442, 542, 667, 737
BlsI	GCNGC	5 cut(s)	232, 443, 543, 668, 738
Bme1390I	CCNGG	2 cut(s)	201, 372
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	248, 522
BmrFI	CCNGG	2 cut(s)	201, 372
BpiI	GAAGAC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 573
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	625
Bse21I	CCTNAGG	1 cut(s)	547
Bse3DI	GCAATG	3 cut(s)	334, 513, 619
BseBI	CCWGG	2 cut(s)	201, 372
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	8 cut(s)	44, 93, 119, 180, 292, 316, 367, 674
BseLI	CCNNNNNNNGG	2 cut(s)	150, 573
BseMI	GCAATG	3 cut(s)	334, 513, 619
BseMII	CTCAG	2 cut(s)	317, 561
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	428, 528, 678, 748
BsgI	GTGCAG	1 cut(s)	755
BshFI	GGCC	2 cut(s)	204, 494
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	2 cut(s)	166, 602
BslI	CCNNNNNNNGG	2 cut(s)	150, 573
BsmFI	GGGAC	2 cut(s)	166, 602
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	204, 494
Bsp143I	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
BspACI	CCGC	4 cut(s)	230, 260, 513, 574
BspANI	GGCC	2 cut(s)	204, 494
BspCNI	CTCAG	2 cut(s)	316, 560
BspLI	GGNNCC	2 cut(s)	248, 522
BspPI	GGATC	4 cut(s)	191, 515, 528, 637
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	3 cut(s)	334, 513, 619
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
Bst2UI	CCWGG	2 cut(s)	201, 372
Bst4CI	ACNGT	3 cut(s)	643, 709, 733
BstC8I	GCNNGC	4 cut(s)	109, 206, 576, 671
BstDEI	CTNAG	3 cut(s)	224, 303, 547
BstF5I	GGATG	8 cut(s)	44, 93, 119, 180, 292, 316, 367, 674
BstHHI	GCGC	2 cut(s)	107, 596
BstKTI	GATC	6 cut(s)	28, 192, 199, 523, 583, 632
BstMBI	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	201, 372
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	199, 370
BstV1I	GCAGC	4 cut(s)	428, 528, 678, 748
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	25, 520
BstXI	CCANNNNNNTGG	2 cut(s)	212, 217
BstYI	RGATCY	2 cut(s)	25, 520
Bsu36I	CCTNAGG	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	204, 494
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	8 cut(s)	44, 93, 119, 180, 292, 316, 367, 674
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	5 cut(s)	192, 311, 339, 648, 729
Cac8I	GCNNGC	4 cut(s)	109, 206, 576, 671
CfoI	GCGC	2 cut(s)	107, 596
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	67, 421
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	224, 303, 547
DpnI	GATC	6 cut(s)	27, 191, 198, 522, 582, 631
DpnII	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
EaeI	YGGCCR	2 cut(s)	202, 492
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	199, 370
FaeI	CATG	2 cut(s)	70, 424
FaiI	YATR	8 cut(s)	68, 132, 186, 353, 383, 422, 446, 497
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	2 cut(s)	166, 602
FatI	CATG	2 cut(s)	66, 420
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	231, 442, 542, 667, 737
FokI	GGATG	8 cut(s)	31, 100, 106, 167, 299, 323, 354, 661
Fsp4HI	GCNGC	5 cut(s)	231, 442, 542, 667, 737
FspBI	CTAG	3 cut(s)	21, 77, 408
FspI	TGCGCA	1 cut(s)	106
GlaI	GCGC	2 cut(s)	106, 595
GluI	GCNGC	5 cut(s)	231, 442, 542, 667, 737
HaeIII	GGCC	2 cut(s)	204, 494
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	2 cut(s)	107, 596
Hin1II	CATG	2 cut(s)	70, 424
Hin6I	GCGC	2 cut(s)	105, 594
HinP1I	GCGC	2 cut(s)	105, 594
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	40, 174, 449, 695
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	5 cut(s)	103, 169, 249, 527, 673
Hpy166II	GTNNAC	3 cut(s)	94, 472, 484
Hpy188I	TCNGA	1 cut(s)	725
Hpy188III	TCNNGA	4 cut(s)	9, 29, 566, 771
Hpy8I	GTNNAC	3 cut(s)	94, 472, 484
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	3 cut(s)	26, 47, 534
HpyCH4III	ACNGT	3 cut(s)	643, 709, 733
HpyCH4V	TGCA	8 cut(s)	332, 337, 381, 444, 612, 617, 736, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	224, 303, 547
Hsp92II	CATG	2 cut(s)	70, 424
HspAI	GCGC	2 cut(s)	105, 594
Kzo9I	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
LmnI	GCTCC	2 cut(s)	63, 252
Lsp1109I	GCAGC	4 cut(s)	428, 528, 678, 748
MaeI	CTAG	3 cut(s)	21, 77, 408
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	6 cut(s)	27, 191, 198, 522, 582, 631
MbiI	CCGCTC	1 cut(s)	513
MboI	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
MboII	GAAGA	2 cut(s)	262, 383
MflI	RGATCY	2 cut(s)	25, 520
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	4 cut(s)	274, 654, 741, 757
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	3 cut(s)	183, 443, 704
MmeI	TCCRAC	2 cut(s)	147, 457
MnlI	CCTC	6 cut(s)	54, 312, 511, 546, 556, 607
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	2 cut(s)	98, 269
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	711, 744
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	201, 372
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	201, 372
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
NlaIII	CATG	2 cut(s)	70, 424
NlaIV	GGNNCC	2 cut(s)	248, 522
NmuCI	GTSAC	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	106
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	2 cut(s)	98, 269
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	232, 443, 543, 668, 738
PleI	GAGTC	3 cut(s)	182, 443, 703
PpsI	GAGTC	3 cut(s)	182, 443, 703
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	199, 370
PspGI	CCWGG	2 cut(s)	199, 370
PspN4I	GGNNCC	2 cut(s)	248, 522
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	25, 520
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	711, 744
SatI	GCNGC	5 cut(s)	231, 442, 542, 667, 737
Sau3AI	GATC	6 cut(s)	25, 189, 196, 520, 580, 629
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	3 cut(s)	183, 443, 704
ScrFI	CCNGG	2 cut(s)	201, 372
SetI	ASST	6 cut(s)	82, 119, 304, 443, 489, 671
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	274, 654, 741, 757
SsiI	CCGC	4 cut(s)	230, 260, 513, 574
SspMI	CTAG	3 cut(s)	21, 77, 408
StyD4I	CCNGG	2 cut(s)	199, 370
TaaI	ACNGT	3 cut(s)	643, 709, 733
TaqI	TCGA	3 cut(s)	298, 394, 602
TasI	AATT	4 cut(s)	274, 654, 741, 757
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	711, 744
Tru9I	TTAA	2 cut(s)	711, 744
TscAI	CASTG	5 cut(s)	199, 311, 339, 648, 736
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	4 cut(s)	441, 541, 666, 736
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	86, 303
TspRI	CASTG	5 cut(s)	199, 311, 339, 648, 736
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	654
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmnI	GAANNNNTTC	2 cut(s)	98, 269
XspI	CTAG	3 cut(s)	21, 77, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.