pycom07g06900

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006180
Physical Location & Seq
Reverse (-)
6176391 .. 6177815
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGGAGAAAAATATGGATCCACCATCTCCAGGCTGCACAGGTGCAGAAGCAGTACTAAGTCTCCAACCCAACTCATCAATTCCTATTACATATCACCCGCTCTTTGGACCTCACGATGATCTGATCCTCCTCGAGGTTGATCAGAAACTTCTCCCTGATGTCCTCCACCAAAGAGTAACTGTTAGAGGACAGCCTGATGAAGATGCAGTCCTCTGCACGGAGTCAAAAACTTATGCAATGAAGTCCGTTGGAACTTCAAATTCTGTTTTTCTCATACCCCCATCAGGTCAATATAATACGTTTGAAAGCCCAAAGTGTTCCAGTGAGAACTATCATGACCCACTATCTGTTGCTTCCGTCATTAAGATTGCAACTGGTAACATGGAGCTTGTTGAAGTTGCTCCCCGACTTGACAAGCTAAGGTTGCTACTTTCCCAGAATCCTTACCGATCTGATGAGGACATAGAAATGGTGGATTTAGAGGAGATGGAGAGAACGAATGCTGGGCTGTATAGATGGAATGATCTCATTGAGAAGGTTCAAGCTAGCGATTACGAATTAAGGATTGGATTGCGGGCTCTGTCAGCAGTGGAGATAAATGGATATTGGAGAATTGTCGATGAGAAGTACATGGGCACAATTCTAAGGATGCTTTTGCACAATTCAGTGTTGAATGATTGGTCCATGTCTTTGCTTAATCAAGATGATGTTGTTAATATGTTGGAATCAGATGGCTTTCCTCGCAAACTTGCAGACCACTGCTTGCATATTTTTGGTAATAAGATGACTGAAGGTGCGATTACAAGTCGTATGTGGAAGTTGGATGAGAGAAAGGTATGTGTGCATTTTGCAAGAGAAATCTTGAGAGATGGGAAGAGGAAGATGAAGAAGTTCATGGAGGAATGGGTTCGTAAGGTTCCCGAAGGGATGGCAGCCAGTTTTGACATATTGGAAGGTGAAGTTTTGATAGAGAAGCTTGGAGCTGAGACATGGATTCGAGCCTTCAGTGTTTCATCTCTACCCTACAATCCTGCAGAGCGATTCTCCATCCTTTTTAAGGAGCGTGCAAAATGGGAGTGGAAGGATCTACAGCCCTTTATCAGGGACTTGAATGTGCCGGGCCTTTCTGCGGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCAGTCTTCAGCGCGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

402

Amino Acids

45.71

Weight (kDa)

5.31

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 42 - 367 7.9e-89 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 100
AccII CGCG 1 cut(s) 1199
AciI CCGC 3 cut(s) 98, 574, 1130
AclWI GGATC 4 cut(s) 11, 24, 118, 1092
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 3 cut(s) 810, 988, 1177
AfaI GTAC 2 cut(s) 54, 629
AfiI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
AgsI TTSAA 6 cut(s) 258, 305, 395, 542, 673, 1111
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 5 cut(s) 388, 418, 545, 976, 983
AluI AGCT 5 cut(s) 388, 418, 545, 976, 983
Alw26I GTCTC 2 cut(s) 65, 980
AlwI GGATC 4 cut(s) 11, 24, 118, 1092
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 1120
ApeKI GCWGC 2 cut(s) 33, 932
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 2 cut(s) 890, 906
AspLEI GCGC 1 cut(s) 1199
AspS9I GGNCC 3 cut(s) 107, 681, 1120
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 2 cut(s) 86, 968
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 107, 681
BaeGI GKGCMC 1 cut(s) 638
BamHI GGATCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 1183
BbvI GCAGC 2 cut(s) 20, 944
BccI CCATC 8 cut(s) 31, 289, 481, 510, 725, 863, 922, 1055
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 2 cut(s) 65, 980
BfaI CTAG 2 cut(s) 546, 1155
BfmI CTRYAG 2 cut(s) 1032, 1088
BisI GCNGC 2 cut(s) 34, 933
BlsI GCNGC 2 cut(s) 35, 934
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 30, 1119
Bme18I GGWCC 2 cut(s) 107, 681
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 107, 681, 1120
BmiI GGNNCC 2 cut(s) 18, 918
BmrFI CCNGG 2 cut(s) 30, 1119
BmsI GCATC 3 cut(s) 193, 639, 1168
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 1183
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 1 cut(s) 1119
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
Bse1I ACTGG 4 cut(s) 321, 379, 936, 1187
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 30
BseGI GGATG 4 cut(s) 654, 829, 933, 1047
BseLI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 4 cut(s) 321, 379, 936, 1187
BseRI GAGGAG 2 cut(s) 119, 497
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 2 cut(s) 20, 944
BseYI CCCAGC 1 cut(s) 503
BsgI GTGCAG 3 cut(s) 19, 63, 199
Bsh1236I CGCG 1 cut(s) 1199
BshFI GGCC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 1118
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
BsmAI GTCTC 2 cut(s) 65, 980
BsmFI GGGAC 1 cut(s) 1118
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 1122
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 580, 638
Bsp143I GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
BspACI CCGC 3 cut(s) 98, 574, 1130
BspANI GGCC 1 cut(s) 1122
BspCNI CTCAG 1 cut(s) 976
BspFNI CGCG 1 cut(s) 1199
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 18, 918
BspMAI CTGCAG 1 cut(s) 1036
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 4 cut(s) 11, 24, 118, 1092
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 4 cut(s) 321, 379, 936, 1187
BssMI GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 869
BstC8I GCNNGC 4 cut(s) 547, 576, 764, 1065
BstDEI CTNAG 4 cut(s) 56, 419, 644, 984
BstENI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
BstF5I GGATG 4 cut(s) 654, 829, 933, 1047
BstFNI CGCG 1 cut(s) 1199
BstHHI GCGC 1 cut(s) 1199
BstKTI GATC 7 cut(s) 19, 121, 126, 142, 452, 526, 1087
BstMAI GTCTC 2 cut(s) 65, 980
BstMBI GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 424, 584, 741
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 1117
BstSFI CTRYAG 2 cut(s) 1032, 1088
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 1 cut(s) 1199
BstV1I GCAGC 2 cut(s) 20, 944
BstV2I GAAGAC 1 cut(s) 1183
BstX2I RGATCY 2 cut(s) 16, 1084
BstYI RGATCY 2 cut(s) 16, 1084
BsuRI GGCC 1 cut(s) 1122
BtsCI GGATG 4 cut(s) 654, 829, 933, 1047
BtsI GCAGTG 2 cut(s) 594, 757
BtsIMutI CAGTG 5 cut(s) 328, 594, 672, 757, 1012
Cac8I GCNNGC 4 cut(s) 547, 576, 764, 1065
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 1199
Cfr13I GGNCC 3 cut(s) 107, 681, 1120
Csp6I GTAC 2 cut(s) 53, 628
CviAII CATG 6 cut(s) 335, 382, 631, 685, 895, 990
CviQI GTAC 2 cut(s) 53, 628
DdeI CTNAG 4 cut(s) 56, 419, 644, 984
DpnI GATC 7 cut(s) 18, 120, 125, 141, 451, 525, 1086
DpnII GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 107, 681
Eco57I CTGAAG 3 cut(s) 810, 988, 1177
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 580
FaeI CATG 6 cut(s) 338, 385, 634, 688, 898, 993
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 1 cut(s) 1118
FatI CATG 6 cut(s) 334, 381, 630, 684, 894, 989
FauI CCCGC 2 cut(s) 105, 567
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 34, 933
FokI GGATG 4 cut(s) 661, 836, 940, 1034
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 2 cut(s) 34, 933
FspBI CTAG 2 cut(s) 546, 1155
GlaI GCGC 1 cut(s) 1198
GluI GCNGC 2 cut(s) 34, 933
GsaI CCCAGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 1 cut(s) 1122
HapII CCGG 1 cut(s) 1118
HhaI GCGC 1 cut(s) 1199
Hin1II CATG 6 cut(s) 338, 385, 634, 688, 898, 993
Hin6I GCGC 1 cut(s) 1197
HinP1I GCGC 1 cut(s) 1197
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 5 cut(s) 221, 439, 725, 994, 1041
HpaII CCGG 1 cut(s) 1118
HphI GGTGA 2 cut(s) 86, 968
Hpy188I TCNGA 4 cut(s) 123, 144, 454, 730
Hpy188III TCNNGA 5 cut(s) 113, 335, 701, 862, 920
HpyAV CCTTC 7 cut(s) 529, 785, 917, 947, 1012, 1075, 1127
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 424, 584, 741
HpyF3I CTNAG 4 cut(s) 56, 419, 644, 984
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 6 cut(s) 338, 385, 634, 688, 898, 993
HspAI GCGC 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
LmnI GCTCC 4 cut(s) 385, 406, 980, 1060
Lsp1109I GCAGC 2 cut(s) 20, 944
LweI GCATC 3 cut(s) 193, 639, 1168
MaeI CTAG 2 cut(s) 546, 1155
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 175, 377
MalI GATC 7 cut(s) 18, 120, 125, 141, 451, 525, 1086
MbiI CCGCTC 1 cut(s) 100
MboI GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
MboII GAAGA 6 cut(s) 212, 886, 892, 898, 1170, 1183
MflI RGATCY 2 cut(s) 16, 1084
MhlI GDGCHC 2 cut(s) 580, 638
MluCI AATT 6 cut(s) 78, 259, 557, 612, 639, 661
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 4 cut(s) 88, 229, 702, 801
MroXI GAANNNNTTC 2 cut(s) 890, 906
MseI TTAA 5 cut(s) 363, 560, 696, 714, 1056
MslI CAYNNNNRTG 1 cut(s) 467
MspI CCGG 1 cut(s) 1118
MspR9I CCNGG 2 cut(s) 30, 1119
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 1199
MwoI GCNNNNNNNGC 3 cut(s) 424, 584, 741
NciI CCSGG 1 cut(s) 1119
NdeII GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 6 cut(s) 338, 385, 634, 688, 898, 993
NlaIV GGNNCC 2 cut(s) 18, 918
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 334
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 2 cut(s) 890, 906
PfeI GAWTC 4 cut(s) 439, 725, 994, 1041
PkrI GCNGC 2 cut(s) 35, 934
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 18, 918
PspPI GGNCC 3 cut(s) 107, 681, 1120
PspXI VCTCGAGB 1 cut(s) 131
PstI CTGCAG 1 cut(s) 1036
PsuI RGATCY 2 cut(s) 16, 1084
RsaI GTAC 2 cut(s) 54, 629
RsaNI GTAC 2 cut(s) 53, 628
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 5 cut(s) 363, 560, 696, 714, 1056
SatI GCNGC 2 cut(s) 34, 933
Sau3AI GATC 7 cut(s) 16, 118, 123, 139, 449, 523, 1084
Sau96I GGNCC 3 cut(s) 107, 681, 1120
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 30, 1119
SduI GDGCHC 2 cut(s) 580, 638
SfaNI GCATC 3 cut(s) 193, 639, 1168
SfcI CTRYAG 2 cut(s) 1032, 1088
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 2 cut(s) 107, 681
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 131, 862
SmoI CTYRAG 2 cut(s) 131, 862
Sse9I AATT 6 cut(s) 78, 259, 557, 612, 639, 661
SsiI CCGC 3 cut(s) 98, 574, 1130
SspMI CTAG 2 cut(s) 546, 1155
StyD4I CCNGG 2 cut(s) 28, 1117
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 302
TaqI TCGA 3 cut(s) 132, 618, 997
TasI AATT 6 cut(s) 78, 259, 557, 612, 639, 661
TatI WGTACW 2 cut(s) 52, 627
TfiI GAWTC 4 cut(s) 439, 725, 994, 1041
Tru1I TTAA 5 cut(s) 363, 560, 696, 714, 1056
Tru9I TTAA 5 cut(s) 363, 560, 696, 714, 1056
TscAI CASTG 5 cut(s) 328, 594, 672, 764, 1012
TseI GCWGC 2 cut(s) 33, 932
TspDTI ATGAA 5 cut(s) 213, 254, 883, 899, 1002
TspGWI ACGGA 3 cut(s) 233, 235, 346
TspRI CASTG 5 cut(s) 328, 594, 672, 764, 1012
VpaK11BI GGWCC 2 cut(s) 107, 681
XagI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
XapI RAATTY 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 890, 906
XspI CTAG 2 cut(s) 546, 1155
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.