pycom07g09680

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010936
Physical Location & Seq
Reverse (-)
9003207 .. 9004143
937 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGGTGGATCTTCAAACTGTTTGCTGCATGTGTGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACGAATGCCGCAATCGCTTTCAACACTCGTATTGTAGCAATTATTATAGCGAATATGCGGAGCCAACTGAACTGTGTGATTGGTGCTTAAGTGATCAAGAAAGGAGCACGGCAAGGCACGGTAGCTCTTCCAAGAAATCGAGTATGGCGGCCGCAGGAGGAGTCGAGACTGGAAGTGCCTCGAGCCGGTCAGAATACTCTGGGGATCGATCAAGCAACACGATCATAATCAAGAGAGTGGTAGCGGTGAGAAGGTTAACACCAAGAACCACCCTAGCAGTGGCGTGCCGTCACCAAGAACCGCTACGCGCAGGTACAAGCTTCTCAAGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

8.62

Isoelectric Point (pI)

64.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 9 - 52 8.4e-24 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 371
AccII CGCG 1 cut(s) 378
AciI CCGC 7 cut(s) 64, 79, 128, 218, 222, 314, 371
AclWI GGATC 2 cut(s) 15, 282
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 255, 349
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 14, 92
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 58, 195, 390
AluI AGCT 3 cut(s) 58, 195, 390
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 15, 282
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 24, 66
AspLEI GCGC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 47, 328, 353
AvaI CYCGRG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 11, 53
BceAI ACGGC 2 cut(s) 195, 342
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 371
BisI GCNGC 5 cut(s) 25, 67, 79, 219, 222
BlsI GCNGC 5 cut(s) 26, 68, 80, 220, 223
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 349
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 277
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 255, 349
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 11, 53
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 255, 349
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 5 cut(s) 7, 163, 274, 278, 291
BspACI CCGC 7 cut(s) 64, 79, 128, 218, 222, 314, 371
BspANI GGCC 1 cut(s) 221
BspDI ATCGAT 1 cut(s) 277
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 2 cut(s) 15, 282
BspQI GCTCTTC 2 cut(s) 65, 202
BspTI CTTAAG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 5 cut(s) 7, 163, 274, 278, 291
Bst4CI ACNGT 3 cut(s) 19, 144, 191
Bst6I CTCTTC 2 cut(s) 65, 202
BstAFI CTTAAG 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 355
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 5 cut(s) 10, 166, 277, 281, 294
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 5 cut(s) 7, 163, 274, 278, 291
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 75, 84
BstNSI RCATGY 1 cut(s) 31
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 11, 53
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 277
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 277
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 355
CciNI GCGGCCGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 277
Csp6I GTAC 1 cut(s) 384
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 58, 133, 195, 221, 255, 390
CviKI_1 RGCY 6 cut(s) 58, 133, 195, 221, 255, 390
CviQI GTAC 1 cut(s) 384
DpnI GATC 5 cut(s) 9, 165, 276, 280, 293
DpnII GATC 5 cut(s) 7, 163, 274, 278, 291
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 65, 202
EarI CTCTTC 2 cut(s) 65, 202
EclXI CGGCCG 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 250
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 117, 126, 215, 296
FatI CATG 1 cut(s) 27
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 5 cut(s) 25, 67, 79, 219, 222
Fsp4HI GCNGC 5 cut(s) 25, 67, 79, 219, 222
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 379
GluI GCNGC 5 cut(s) 25, 67, 79, 219, 222
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 380
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 1 cut(s) 231
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 1 cut(s) 256
HphI GGTGA 3 cut(s) 47, 328, 353
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 4 cut(s) 50, 167, 235, 301
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 3 cut(s) 19, 144, 191
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 27, 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 84
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 5 cut(s) 7, 163, 274, 278, 291
LguI GCTCTTC 2 cut(s) 65, 202
LmnI GCTCC 2 cut(s) 130, 174
LpnPI CCDG 6 cut(s) 63, 210, 225, 255, 269, 366
Lsp1109I GCAGC 2 cut(s) 11, 53
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 35, 359
MalI GATC 5 cut(s) 9, 165, 276, 280, 293
MboI GATC 5 cut(s) 7, 163, 274, 278, 291
MboII GAAGA 2 cut(s) 52, 189
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 2 cut(s) 221, 259
MseI TTAA 2 cut(s) 158, 326
MspA1I CMGCKG 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 80
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 75, 84
NdeII GATC 5 cut(s) 7, 163, 274, 278, 291
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 35, 359
NotI GCGGCCGC 1 cut(s) 219
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 250
PciSI GCTCTTC 2 cut(s) 65, 202
PctI GAATGC 1 cut(s) 80
PkrI GCNGC 5 cut(s) 26, 68, 80, 220, 223
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 250
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SapI GCTCTTC 2 cut(s) 65, 202
SaqAI TTAA 2 cut(s) 158, 326
SatI GCNGC 5 cut(s) 25, 67, 79, 219, 222
Sau3AI GATC 5 cut(s) 7, 163, 274, 278, 291
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 179
SetI ASST 6 cut(s) 42, 60, 197, 326, 385, 392
Sfr274I CTCGAG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 157, 250, 394
SmoI CTYRAG 3 cut(s) 157, 250, 394
Sse9I AATT 1 cut(s) 109
SsiI CCGC 7 cut(s) 64, 79, 128, 218, 222, 314, 371
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 3 cut(s) 19, 144, 191
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 209, 234, 251, 277
TasI AATT 1 cut(s) 109
TauI GCSGC 3 cut(s) 81, 221, 224
Tru1I TTAA 2 cut(s) 158, 326
Tru9I TTAA 2 cut(s) 158, 326
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 35, 359
TseI GCWGC 2 cut(s) 24, 66
Tsp45I GTSAC 2 cut(s) 35, 359
TspRI CASTG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 157
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 250
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.