Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Reverse (-)

10560901 .. 10562548

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCCAAGTGAGCAAAATCTGCAGCAATGGAGCTCAAAGCATCAACGTTTTTCCCAATGTTTCCAAACCACAAATACCCAAATCCTCAAATTTGCTCACATTGAAGTCACATTTTCTGGGTTCGTCAAATTCTTTGAGTTTGAAGCTGAAATATGGGTCTGTGGGCAGTTTTACGGTTGGCAAAGTCAGGGTCGATCCGCTTAGAATTGCAGCTTCAGTTGCCGCGGCAGAGAAGCCGTCGACAGTTCCGGAGATTGTGCTGCAACCCATTGAAGAAATCTCCGGCAACATAAAGTTGCCGGGTTCCAAGTCGTTGTCGAATCGGATTCTGCTTATTGCTGCTCTCTCTGAGGGAACAACTGTTGTTGACAACTTATTAGATAGTGATGATATTCATTATATGCTTGGTGCATTGAAAACCCTTGGGTTGAATGTTGAAGAGGACAAGGTAAACAAGCGAGCAGTCGTGGAGGGTTGTGGTGGTCGGTTTCCCTTGAGTAATGAATCAGTAGATGAAGTGCAACTATTCCTTGGAAATGCTGGAACAGCAATGCGGCCATTGACTGCTGCAGTTGTTGCTGCTGGTGGACATGCTAGGTATGTACTTGATGGGGTGCCTCGAATGAGGGAGAGACCAATCGGAGACTTGGTTGATGGTCTTAAGCAGCTTGGTGCGGATGCTGATTGTTTTCTTGGAACAAACTGCCCTCCTGTCCGTGTGATTGGAAAGGGAGGCCTTCCAGGGGGGAAGGTGAAGCTCTCTGGATCAATTAGTAGTCAGTACTTGACTGCTTTGCTTATGGCAGCTCCTTTGGCTCTTGCAGTTGTTGAGATTGATCGATCATTGATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

286

Amino Acids

29.75

Weight (kDa)

8.84

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	89 - 279	4.2e-52	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	5 cut(s)	200, 225, 227, 556, 677
AclI	AACGTT	1 cut(s)	48
AclWI	GGATC	2 cut(s)	191, 775
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	91, 130
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	606, 785
AfiI	CCNNNNNNNGG	1 cut(s)	745
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	6 cut(s)	106, 145, 275, 418, 433, 440
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	6 cut(s)	35, 148, 215, 670, 760, 809
AluI	AGCT	6 cut(s)	35, 148, 215, 670, 760, 809
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	628, 639
AlwI	GGATC	2 cut(s)	191, 775
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	3, 557, 736
ApeKI	GCWGC	8 cut(s)	24, 212, 262, 341, 569, 581, 667, 806
ApoI	RAATTY	2 cut(s)	91, 130
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
BccI	CCATC	2 cut(s)	605, 650
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	628, 639
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	2 cut(s)	22, 570
BfrI	CTTAAG	1 cut(s)	662
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	303, 744
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	307, 618
BmrFI	CCNGG	2 cut(s)	303, 744
BmsI	GCATC	2 cut(s)	51, 670
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	841
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	4 cut(s)	225, 424, 532, 743
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
Bse3DI	GCAATG	2 cut(s)	34, 558
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	1 cut(s)	841
BseDI	CCNNGG	4 cut(s)	225, 424, 532, 743
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMI	GCAATG	2 cut(s)	34, 558
BseMII	CTCAG	1 cut(s)	342
BseXI	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	3 cut(s)	5, 559, 738
BshNI	GGYRCC	1 cut(s)	616
BshVI	ATCGAT	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	251, 285, 302
BslI	CCNNNNNNNGG	1 cut(s)	745
BsmAI	GTCTC	2 cut(s)	628, 639
BsnI	GGCC	3 cut(s)	5, 559, 738
Bso31I	GGTCTC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	196, 767, 838, 842
BspACI	CCGC	5 cut(s)	200, 225, 227, 556, 677
BspANI	GGCC	3 cut(s)	5, 559, 738
BspCNI	CTCAG	1 cut(s)	343
BspDI	ATCGAT	1 cut(s)	841
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	307, 618
BspMAI	CTGCAG	2 cut(s)	26, 574
BspPI	GGATC	2 cut(s)	191, 775
BspT107I	GGYRCC	1 cut(s)	616
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	2 cut(s)	34, 558
BssECI	CCNNGG	4 cut(s)	225, 424, 532, 743
BssMI	GATC	4 cut(s)	196, 767, 838, 842
BssT1I	CCWWGG	2 cut(s)	424, 532
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	178, 247, 364
Bst6I	CTCTTC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	2 cut(s)	21, 578
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	203, 351
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	4 cut(s)	199, 770, 841, 845
BstMAI	GTCTC	2 cut(s)	628, 639
BstMBI	GATC	4 cut(s)	196, 767, 838, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 221, 548, 578, 815
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	301, 742
BstSFI	CTRYAG	2 cut(s)	22, 570
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
Bsu15I	ATCGAT	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	5, 559, 738
BsuTUI	ATCGAT	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	605, 784
CviAII	CATG	1 cut(s)	593
CviQI	GTAC	2 cut(s)	605, 784
DdeI	CTNAG	2 cut(s)	203, 351
DpnI	GATC	4 cut(s)	198, 769, 840, 844
DpnII	GATC	4 cut(s)	196, 767, 838, 842
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	424, 532
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	2 cut(s)	424, 532
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	424, 532
FaeI	CATG	1 cut(s)	596
FaiI	YATR	7 cut(s)	156, 293, 402, 404, 594, 603, 803
FatI	CATG	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	1 cut(s)	692
FriOI	GRGCYC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	5, 559, 738
HapII	CCGG	3 cut(s)	251, 285, 302
Hin1II	CATG	1 cut(s)	596
HincII	GTYRAC	2 cut(s)	243, 370
HindII	GTYRAC	2 cut(s)	243, 370
HinfI	GANTC	3 cut(s)	322, 328, 506
HpaII	CCGG	3 cut(s)	251, 285, 302
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	4 cut(s)	243, 370, 454, 590
Hpy188I	TCNGA	3 cut(s)	327, 352, 644
Hpy188III	TCNNGA	2 cut(s)	251, 765
Hpy8I	GTNNAC	4 cut(s)	243, 370, 454, 590
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	745, 749
HpyCH4III	ACNGT	3 cut(s)	178, 247, 364
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	7 cut(s)	24, 212, 265, 413, 523, 572, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 221, 548, 578, 815
HpyF3I	CTNAG	2 cut(s)	203, 351
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	196, 767, 838, 842
LmnI	GCTCC	2 cut(s)	32, 814
Lsp1109I	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
LweI	GCATC	2 cut(s)	51, 670
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	4 cut(s)	198, 769, 840, 844
MboI	GATC	4 cut(s)	196, 767, 838, 842
MboII	GAAGA	2 cut(s)	287, 452
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	4 cut(s)	91, 130, 207, 771
MnlI	CCTC	8 cut(s)	97, 346, 436, 466, 621, 630, 720, 728
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	2 cut(s)	663, 856
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	251, 285, 302
MspR9I	CCNGG	2 cut(s)	303, 744
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	21, 221, 548, 578, 815
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	196, 767, 838, 842
NlaIII	CATG	1 cut(s)	596
NlaIV	GGNNCC	2 cut(s)	307, 618
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	322, 328, 506
Psp124BI	GAGCTC	1 cut(s)	37
Psp1406I	AACGTT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	307, 618
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	26, 574
RsaI	GTAC	2 cut(s)	606, 785
RsaNI	GTAC	2 cut(s)	605, 784
SacI	GAGCTC	1 cut(s)	37
SacII	CCGCGG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	663, 856
Sau3AI	GATC	4 cut(s)	196, 767, 838, 842
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	785
ScrFI	CCNGG	2 cut(s)	303, 744
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	2 cut(s)	51, 670
SfcI	CTRYAG	2 cut(s)	22, 570
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	496, 662
SmoI	CTYRAG	2 cut(s)	496, 662
Sse9I	AATT	4 cut(s)	91, 130, 207, 771
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	5 cut(s)	200, 225, 227, 556, 677
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	301, 742
StyI	CCWWGG	2 cut(s)	424, 532
TaaI	ACNGT	3 cut(s)	178, 247, 364
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	195, 242, 320, 622, 841
TasI	AATT	4 cut(s)	91, 130, 207, 771
TatI	WGTACW	2 cut(s)	604, 783
TauI	GCSGC	3 cut(s)	227, 230, 559
TfiI	GAWTC	3 cut(s)	322, 328, 506
Tru1I	TTAA	2 cut(s)	663, 856
Tru9I	TTAA	2 cut(s)	663, 856
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	8 cut(s)	24, 212, 262, 341, 569, 581, 667, 806
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	3 cut(s)	386, 519, 531
TspGWI	ACGGA	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	91, 130
XceI	RCATGY	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	597
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.