pycom07g12660

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
13975366 .. 13977817
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
ATGTCCTCCTTCTTGTACCAAAGACCAATCCACAACCCGCTTTCAGATCCCTACCCGATTTCCCCGCGCTCCTCCGCCAACTCCCACAAGCCATATTCGATCTTCAGCCCCACTACCCTCCTGGTCCTCCTCTCGCTCATGGTGGTGATGGGCGTCTTCTTCCCCTGGGTGGGGATGCGGGAGAGCCTGTTCTCGGTCACCACCAGGCCCTCCATCGCCAAGTGGCGGGACTACACGCTGGCTCAGGCGGCGTCGTTCGTGGCCCGAAACGGGACGGTGATTGTTTGCGCCGTCAGTCAGCCGTACTTGCCGTTTTTGAACAACTGGTTGATCAGCATTGCCAGGCAAAAGCACCAGGACAAGGTGCTTGTGATTGCCGAAGACTATGCCACGCTTTATAAGGTGAATGAGTGGTGGCCGGGCCACGCCGTGCTTGTGCCGCCTGCGCTGGATGCTCAGACTGCCCATAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCCGAAGGCCGCGGCACCTGTTGCAGATTTTGGAACTTGGATACAATGTTATGTACAATGATGTTGATATGGTGTGGTTGGCTGATCCGTTTCCCTATTTCGAAGGAAACCATGACGTGTACTTCACAGATGACTTGACTCCAGTCAAACCTCTGAACCACTCTCACGATCTGCCACCTCCAGGAAAGAAAGGACGCACTTATATCTGCAGCTGCATGATTTTCCTGCGTCCAACTAGTGGAGCAAAATTACTTATGAAGAAGTGGATTGAGGAACTTAAAGACCAACCATGGTCCAGAGAAAAAAAAGCAAATGATCAGCCTGCTTTTAACTGGGCATTAGACAAACTTGCTAACGAGGTGGATCTCTATCTGCTGCCGCAGGCAGCATTCCCAACTGGAGGACTATACTTTAAGAACAAGACATGGGTGCAGGAAACTAAAGGGATGCACGTTATACTTCACAATAATTATATCCTGGGTTTCGAGAAGAAGATAAAACGCTTCCATGATTATGATCTCTGGTTGGTCGATCGATCATGCTGA

Protein Analysis

349

Amino Acids

40.14

Weight (kDa)

9.06

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 118 - 336 6e-46 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009229)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 740
AccII CGCG 2 cut(s) 67, 514
AclWI GGATC 3 cut(s) 41, 581, 873
AcoI YGGCCR 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 2 cut(s) 153, 251
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 4 cut(s) 17, 305, 557, 623
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 2 cut(s) 319, 493
AhlI ACTAGT 1 cut(s) 737
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 7 cut(s) 120, 164, 203, 341, 354, 682, 978
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 1 cut(s) 714
AluI AGCT 1 cut(s) 714
AlwI GGATC 3 cut(s) 41, 581, 873
AoxI GGCC 5 cut(s) 206, 261, 416, 421, 509
ApeKI GCWGC 4 cut(s) 711, 714, 877, 887
AspLEI GCGC 3 cut(s) 69, 290, 448
AspS9I GGNCC 5 cut(s) 124, 207, 262, 421, 795
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 4 cut(s) 157, 190, 289, 415
AsuII TTCGAA 1 cut(s) 603
AvaII GGWCC 2 cut(s) 124, 795
BanI GGYRCC 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 148, 387
BbvI GCAGC 4 cut(s) 701, 723, 864, 899
BccI CCATC 2 cut(s) 142, 221
BceAI ACGGC 4 cut(s) 275, 286, 295, 413
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 7 cut(s) 122, 166, 205, 343, 356, 684, 980
BciVI GTATCC 1 cut(s) 536
BclI TGATCA 2 cut(s) 330, 817
BcnI CCSGG 1 cut(s) 420
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 709
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 9 cut(s) 249, 440, 512, 515, 712, 715, 878, 881, 888
BlsI GCNGC 9 cut(s) 250, 441, 513, 516, 713, 716, 879, 882, 889
Bme1390I CCNGG 8 cut(s) 122, 166, 205, 343, 356, 420, 684, 980
Bme18I GGWCC 2 cut(s) 124, 795
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 5 cut(s) 124, 207, 262, 421, 795
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 8 cut(s) 122, 166, 205, 343, 356, 420, 684, 980
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 3 cut(s) 165, 442, 939
BmuI ACTGGG 1 cut(s) 844
BoxI GACNNNNGTC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 148, 387
BpmI CTGGAG 3 cut(s) 627, 666, 921
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 1036
BsaBI GATNNNNATC 2 cut(s) 870, 1017
BsaHI GRCGYC 2 cut(s) 153, 251
BsaJI CCNNGG 5 cut(s) 164, 165, 512, 791, 979
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse1I ACTGG 4 cut(s) 329, 644, 839, 904
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 870, 1017
BseBI CCWGG 7 cut(s) 122, 166, 205, 343, 356, 684, 980
BseCI ATCGAT 1 cut(s) 1036
BseDI CCNNGG 5 cut(s) 164, 165, 512, 791, 979
BseGI GGATG 3 cut(s) 180, 457, 954
BseJI GATNNNNATC 2 cut(s) 870, 1017
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 257, 470, 494
BseNI ACTGG 4 cut(s) 329, 644, 839, 904
BseRI GAGGAG 2 cut(s) 61, 119
BseXI GCAGC 4 cut(s) 701, 723, 864, 899
BsgI GTGCAG 1 cut(s) 953
Bsh1236I CGCG 2 cut(s) 67, 514
Bsh1285I CGRYCG 1 cut(s) 1036
BshFI GGCC 5 cut(s) 208, 263, 418, 423, 511
BshNI GGYRCC 1 cut(s) 516
BshVI ATCGAT 1 cut(s) 1036
BsiEI CGRYCG 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 2 cut(s) 242, 286
BsmFI GGGAC 2 cut(s) 242, 286
BsmI GAATGC 1 cut(s) 890
BsnI GGCC 5 cut(s) 208, 263, 418, 423, 511
Bsp119I TTCGAA 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 555
Bsp19I CCATGG 1 cut(s) 791
BspANI GGCC 5 cut(s) 208, 263, 418, 423, 511
BspCNI CTCAG 3 cut(s) 256, 469, 493
BspDI ATCGAT 1 cut(s) 1036
BspFNI CGCG 2 cut(s) 67, 514
BspLI GGNNCC 1 cut(s) 518
BspMAI CTGCAG 1 cut(s) 713
BspPI GGATC 3 cut(s) 41, 581, 873
BspT104I TTCGAA 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 4 cut(s) 329, 644, 839, 904
BssECI CCNNGG 5 cut(s) 164, 165, 512, 791, 979
BssNI GRCGYC 2 cut(s) 153, 251
BssT1I CCWWGG 1 cut(s) 791
Bst2UI CCWGG 7 cut(s) 122, 166, 205, 343, 356, 684, 980
Bst4CI ACNGT 1 cut(s) 277
BstACI GRCGYC 2 cut(s) 153, 251
BstAPI GCANNNNNTGC 1 cut(s) 523
BstAUI TGTACA 1 cut(s) 555
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 240, 444, 825, 885
BstDEI CTNAG 3 cut(s) 243, 456, 480
BstDSI CCRYGG 2 cut(s) 512, 791
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 3 cut(s) 180, 457, 954
BstFNI CGCG 2 cut(s) 67, 514
BstHHI GCGC 3 cut(s) 69, 290, 448
BstMCI CGRYCG 1 cut(s) 1036
BstMWI GCNNNNNNNGC 7 cut(s) 248, 307, 439, 445, 452, 461, 523
BstNI CCWGG 7 cut(s) 122, 166, 205, 343, 356, 684, 980
BstPAI GACNNNNGTC 1 cut(s) 644
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 8 cut(s) 120, 164, 203, 341, 354, 418, 682, 978
BstSFI CTRYAG 1 cut(s) 709
BstUI CGCG 2 cut(s) 67, 514
BstV1I GCAGC 4 cut(s) 701, 723, 864, 899
BstV2I GAAGAC 2 cut(s) 148, 387
BstX2I RGATCY 2 cut(s) 46, 865
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 2 cut(s) 46, 865
Bsu15I ATCGAT 1 cut(s) 1036
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 5 cut(s) 208, 263, 418, 423, 511
BsuTUI ATCGAT 1 cut(s) 1036
BtgI CCRYGG 2 cut(s) 512, 791
BtgZI GCGATG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 3 cut(s) 180, 457, 954
Cac8I GCNNGC 4 cut(s) 240, 444, 825, 885
CfoI GCGC 3 cut(s) 69, 290, 448
Cfr13I GGNCC 5 cut(s) 124, 207, 262, 421, 795
Cfr42I CCGCGG 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 1036
CseI GACGC 4 cut(s) 142, 240, 705, 719
Csp6I GTAC 4 cut(s) 16, 304, 556, 622
CviAII CATG 7 cut(s) 139, 614, 718, 792, 927, 1010, 1041
CviQI GTAC 4 cut(s) 16, 304, 556, 622
DdeI CTNAG 3 cut(s) 243, 456, 480
DraIII CACNNNGTG 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 416
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 791
Eco47I GGWCC 2 cut(s) 124, 795
Eco57I CTGAAG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 207
EcoO65I GGTNACC 1 cut(s) 196
EcoRII CCWGG 7 cut(s) 120, 164, 203, 341, 354, 682, 978
EcoT14I CCWWGG 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 791
FaeI CATG 7 cut(s) 142, 617, 721, 795, 930, 1013, 1044
FaqI GGGAC 2 cut(s) 242, 286
FatI CATG 7 cut(s) 138, 613, 717, 791, 926, 1009, 1040
FauI CCCGC 4 cut(s) 45, 72, 171, 219
FbaI TGATCA 2 cut(s) 330, 817
Fnu4HI GCNGC 9 cut(s) 249, 440, 512, 515, 712, 715, 878, 881, 888
FokI GGATG 3 cut(s) 187, 464, 961
Fsp4HI GCNGC 9 cut(s) 249, 440, 512, 515, 712, 715, 878, 881, 888
FspBI CTAG 1 cut(s) 738
GlaI GCGC 3 cut(s) 68, 289, 447
GluI GCNGC 9 cut(s) 249, 440, 512, 515, 712, 715, 878, 881, 888
GsuI CTGGAG 3 cut(s) 627, 666, 921
HaeIII GGCC 5 cut(s) 208, 263, 418, 423, 511
HapII CCGG 1 cut(s) 419
HgaI GACGC 4 cut(s) 142, 240, 705, 719
HhaI GCGC 3 cut(s) 69, 290, 448
Hin1I GRCGYC 2 cut(s) 153, 251
Hin1II CATG 7 cut(s) 142, 617, 721, 795, 930, 1013, 1044
Hin6I GCGC 3 cut(s) 67, 288, 446
HinP1I GCGC 3 cut(s) 67, 288, 446
HinfI GANTC 2 cut(s) 486, 640
HpaII CCGG 1 cut(s) 419
HphI GGTGA 4 cut(s) 157, 190, 289, 415
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 3 cut(s) 46, 459, 657
Hpy188III TCNNGA 4 cut(s) 504, 668, 798, 988
Hpy8I GTNNAC 1 cut(s) 622
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 19, 501, 599
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 618, 954
HpyCH4V TGCA 5 cut(s) 526, 711, 717, 934, 952
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 307, 439, 445, 452, 461, 523
HpyF3I CTNAG 3 cut(s) 243, 456, 480
HpySE526I ACGT 2 cut(s) 618, 954
Hsp92I GRCGYC 2 cut(s) 153, 251
Hsp92II CATG 7 cut(s) 142, 617, 721, 795, 930, 1013, 1044
HspAI GCGC 3 cut(s) 67, 288, 446
Ksp22I TGATCA 2 cut(s) 330, 817
KspI CCGCGG 1 cut(s) 515
LmnI GCTCC 2 cut(s) 74, 743
Lsp1109I GCAGC 4 cut(s) 701, 723, 864, 899
LweI GCATC 3 cut(s) 165, 442, 939
MaeI CTAG 1 cut(s) 738
MaeII ACGT 2 cut(s) 618, 954
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 8 cut(s) 94, 148, 151, 392, 481, 772, 1003, 1006
MflI RGATCY 2 cut(s) 46, 865
MluCI AATT 2 cut(s) 749, 970
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 758
MseI TTAA 3 cut(s) 780, 831, 915
MslI CAYNNNNRTG 2 cut(s) 143, 1014
MspA1I CMGCKG 2 cut(s) 514, 714
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 8 cut(s) 122, 166, 205, 343, 356, 420, 684, 980
Mva1269I GAATGC 1 cut(s) 890
MvaI CCWGG 7 cut(s) 122, 166, 205, 343, 356, 684, 980
MvnI CGCG 2 cut(s) 67, 514
MwoI GCNNNNNNNGC 7 cut(s) 248, 307, 439, 445, 452, 461, 523
NciI CCSGG 1 cut(s) 420
NcoI CCATGG 1 cut(s) 791
NlaIII CATG 7 cut(s) 142, 617, 721, 795, 930, 1013, 1044
NlaIV GGNNCC 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 196
NspV TTCGAA 1 cut(s) 603
PasI CCCWGGG 1 cut(s) 165
PctI GAATGC 1 cut(s) 890
PfeI GAWTC 1 cut(s) 486
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 9 cut(s) 250, 441, 513, 516, 713, 716, 879, 882, 889
Ple19I CGATCG 1 cut(s) 1036
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 644
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 7 cut(s) 120, 164, 203, 341, 354, 682, 978
PspEI GGTNACC 1 cut(s) 196
PspGI CCWGG 7 cut(s) 120, 164, 203, 341, 354, 682, 978
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 5 cut(s) 124, 207, 262, 421, 795
PstI CTGCAG 1 cut(s) 713
PsuI RGATCY 2 cut(s) 46, 865
PvuI CGATCG 1 cut(s) 1036
PvuII CAGCTG 1 cut(s) 714
RsaI GTAC 4 cut(s) 17, 305, 557, 623
RsaNI GTAC 4 cut(s) 16, 304, 556, 622
RseI CAYNNNNRTG 2 cut(s) 143, 1014
SacII CCGCGG 1 cut(s) 515
SaqAI TTAA 3 cut(s) 780, 831, 915
SatI GCNGC 9 cut(s) 249, 440, 512, 515, 712, 715, 878, 881, 888
Sau96I GGNCC 5 cut(s) 124, 207, 262, 421, 795
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 8 cut(s) 122, 166, 205, 343, 356, 420, 684, 980
SetI ASST 9 cut(s) 366, 405, 522, 621, 655, 682, 716, 864, 957
SfaNI GCATC 3 cut(s) 165, 442, 939
SfcI CTRYAG 1 cut(s) 709
Sfr303I CCGCGG 1 cut(s) 515
SfuI TTCGAA 1 cut(s) 603
SgrBI CCGCGG 1 cut(s) 515
SinI GGWCC 2 cut(s) 124, 795
SmiMI CAYNNNNRTG 2 cut(s) 143, 1014
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 2 cut(s) 749, 970
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 8 cut(s) 120, 164, 203, 341, 354, 418, 682, 978
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 2 cut(s) 621, 957
TaqI TCGA 5 cut(s) 98, 603, 987, 1032, 1036
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 749, 970
TatI WGTACW 2 cut(s) 555, 621
TauI GCSGC 5 cut(s) 251, 442, 514, 517, 883
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 3 cut(s) 780, 831, 915
Tru9I TTAA 3 cut(s) 780, 831, 915
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 4 cut(s) 711, 714, 877, 887
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 773
TspGWI ACGGA 1 cut(s) 579
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 124, 795
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.