pycom07g23010

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012362
Physical Location & Seq
Forward (+)
24111920 .. 24113720
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23010.2

Sequence Viewer

Length: 1134 bp
ATGGGTTTTGCAGTTCTTCTCTTCTCCTTCCTGATTTTCTTCACAAACCCGTTATGGGTTTGTGGAAACGCAGAGCTAAAAGCACTTTTGGACATGAAAGCGCTTTTGGACCCGCAAGGCTTGTACCTTTCTTCTTGGACAGTCAATGGCGACCCCTGCGACGGGTCCTTTGAGGGAATAGGGTGCAATAAGGCGGGTCAAGTCGCCAACATTTCGCTGCAGGGAAAGAGGCTCTCTGGGAAGCTCTCTCCCGCCATTGCACAGCTCAAGCATCTGACGGGGATTTACATGCATTACAACTCTCTTCAAGGAGAGATTCCAAGGGAGATTGCTAACTTGACGGAGCTGACTGACTTGTATTTGAATGTGAATAATCTCTTCGGAGTTATTCCTCCCGAGATCGGAAGCATGAGCAGCTTGCAAGTTTTGCAACTTTGCTATAATCAGCTCACCGGAAGCATTCCCACGCAGCTGGGATCTTTGAAAAACCTGAGCGTTCTTGCTCTGCAATCTAATCAATTAACCGGCGCAATACCGGCTAGTTTGGGGGACCTAGAAATGTTGATGAGACTGGATTTGAGTGTCAATCATCTTTTCGGTTCTATTCCCACAAAACTTGCTGATGCGCCGGTGCTTGAAGTTCTAGACGTTCGGAATAATACCCTATCCGGCAATGTACCTCTTGCCTTGAAGAGACTTACTGAAGGATTCTCTTATGAAAACAATCTGGGATTATGTGGAGCTGGATTCATGTCCTTAACCGCCTGCACTACTTCCGGTCATCTCAACACGAGTCGACCTGAGCCCTTTAGAGCCGGTGTGCCAACAAGAGACATCCCGGAGACTGCACATGTGCCTTTGCCCTGCAACCAAACTCGTTGCTCGAATTTGTCAAAATCCCATCAAGCCTCTGTTGCTGTAGTTGTTGGTCTCATTGTAGTAACTATTGCATTGTCAGGTGTGGGGTTTCTATTCTTTGCCCAACACCGGCGCAGGAAACAGAAGCTTGGTAACTCATTTGATACAGCTGATGGCCGTCTTAGTACTGACGAGGCCAAGGGCAATGGAGTTTACAGGAAGAATGGATCGATCCTCTCATCAGCCTTGAGTATGCCAAAGGCTGGGATCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

378

Amino Acids

40.36

Weight (kDa)

8.38

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51560
fragaria_vesca FvH4_7g28070
malus_domestica MD01G1184900.v1.1 MD07G1257200.v1.1
prunus_persica Prupe.2G281400_v2.0.a1
pyrus_communis pycom01g19660 pycom07g23010 pycom07g23020
rosa_chinensis RchiOBHm_Chr1g0375021
rosa_laevigata RLG00000026697
rosa_multiflora Rmu_sc0000554.1_g000005 Rmu_sc0017099.1_g000006
rosa_roxburghii Rroxscaffold_4G00283080
rosa_rugosa Rorug01G0387500
rosa_samantha Rh1AG398100 Rh1BG362000 Rh1CG375700 Rh1DG393200
rosa_wichuraiana Rw1G035330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1121
AccI GTMKAC 1 cut(s) 796
AciI CCGC 4 cut(s) 113, 194, 252, 762
AclWI GGATC 5 cut(s) 484, 1084, 1093, 1120, 1133
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 1 cut(s) 886
AcuI CTGAAG 1 cut(s) 723
AfaI GTAC 3 cut(s) 125, 678, 1045
AfeI AGCGCT 1 cut(s) 102
AfiI CCNNNNNNNGG 6 cut(s) 55, 161, 162, 401, 987, 1121
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 308, 364, 484, 638, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw26I GTCTC 5 cut(s) 562, 688, 825, 836, 935
AlwI GGATC 5 cut(s) 484, 1084, 1093, 1120, 1133
Ama87I CYCGRG 1 cut(s) 395
Aor51HI AGCGCT 1 cut(s) 102
AoxI GGCC 2 cut(s) 1033, 1053
ApeKI GCWGC 3 cut(s) 217, 414, 469
ApoI RAATTY 1 cut(s) 886
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 4 cut(s) 103, 530, 628, 993
AspS9I GGNCC 3 cut(s) 109, 165, 550
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 3 cut(s) 109, 165, 550
BamHI GGATCC 1 cut(s) 1125
BanII GRGCYC 1 cut(s) 807
BauI CACGAG 1 cut(s) 790
BbvI GCAGC 3 cut(s) 204, 426, 481
BccI CCATC 2 cut(s) 909, 1025
BceAI ACGGC 1 cut(s) 1020
BcnI CCSGG 1 cut(s) 839
BcoDI GTCTC 5 cut(s) 562, 688, 825, 836, 935
BfaI CTAG 3 cut(s) 540, 554, 644
BfmI CTRYAG 2 cut(s) 218, 918
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 3 cut(s) 218, 415, 470
BlsI GCNGC 3 cut(s) 219, 416, 471
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 1 cut(s) 839
Bme18I GGWCC 3 cut(s) 109, 165, 550
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 109, 165, 550
BmiI GGNNCC 4 cut(s) 111, 166, 551, 1127
BmrFI CCNGG 1 cut(s) 839
BmsI GCATC 2 cut(s) 280, 613
Bpu10I CCTNAGC 2 cut(s) 491, 801
BpuEI CTTGAG 2 cut(s) 251, 1126
BpuMI CCSGG 1 cut(s) 839
Bsa29I ATCGAT 1 cut(s) 1088
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 2 cut(s) 320, 1056
BsaWI WCCGGW 2 cut(s) 452, 776
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 161, 162, 401, 987, 1121
Bse118I RCCGGY 5 cut(s) 524, 535, 628, 815, 987
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 3 cut(s) 255, 679, 1069
BseCI ATCGAT 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 320, 1056
BseGI GGATG 1 cut(s) 834
BseLI CCNNNNNNNGG 6 cut(s) 55, 161, 162, 401, 987, 1121
BseMI GCAATG 3 cut(s) 255, 679, 1069
BseMII CTCAG 2 cut(s) 482, 792
BseNI ACTGG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 204, 426, 481
BseYI CCCAGC 2 cut(s) 472, 1121
BsgI GTGCAG 2 cut(s) 751, 831
BshFI GGCC 2 cut(s) 1035, 1055
BshVI ATCGAT 1 cut(s) 1088
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 9 cut(s) 453, 525, 536, 629, 669, 777, 816, 839, 988
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 6 cut(s) 55, 161, 162, 401, 987, 1121
BsmAI GTCTC 5 cut(s) 562, 688, 825, 836, 935
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 2 cut(s) 1035, 1055
Bso31I GGTCTC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 5 cut(s) 399, 476, 1085, 1089, 1125
BspACI CCGC 4 cut(s) 113, 194, 252, 762
BspANI GGCC 2 cut(s) 1035, 1055
BspCNI CTCAG 2 cut(s) 483, 793
BspDI ATCGAT 1 cut(s) 1088
BspLI GGNNCC 4 cut(s) 111, 166, 551, 1127
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 5 cut(s) 484, 1084, 1093, 1120, 1133
BspTNI GGTCTC 1 cut(s) 935
BsrDI GCAATG 3 cut(s) 255, 679, 1069
BsrFI RCCGGY 5 cut(s) 524, 535, 628, 815, 987
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 5 cut(s) 524, 535, 628, 815, 987
BssECI CCNNGG 2 cut(s) 320, 1056
BssMI GATC 5 cut(s) 399, 476, 1085, 1089, 1125
BssSI CACGAG 1 cut(s) 790
BssT1I CCWWGG 2 cut(s) 320, 1056
Bst2BI CACGAG 1 cut(s) 790
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 4 cut(s) 26, 309, 383, 686
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 419, 766
BstDEI CTNAG 3 cut(s) 491, 801, 1040
BstF5I GGATG 1 cut(s) 834
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 4 cut(s) 103, 530, 628, 993
BstKTI GATC 5 cut(s) 402, 479, 1088, 1092, 1128
BstMAI GTCTC 5 cut(s) 562, 688, 825, 836, 935
BstMBI GATC 5 cut(s) 399, 476, 1085, 1089, 1125
BstMWI GCNNNNNNNGC 5 cut(s) 156, 414, 427, 536, 914
BstNSI RCATGY 2 cut(s) 292, 854
BstSCI CCNGG 1 cut(s) 837
BstSFI CTRYAG 2 cut(s) 218, 918
BstV1I GCAGC 3 cut(s) 204, 426, 481
BstX2I RGATCY 2 cut(s) 476, 1125
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 2 cut(s) 476, 1125
Bsu15I ATCGAT 1 cut(s) 1088
BsuRI GGCC 2 cut(s) 1035, 1055
BsuTUI ATCGAT 1 cut(s) 1088
BtsCI GGATG 1 cut(s) 834
Cac8I GCNNGC 2 cut(s) 419, 766
CfoI GCGC 4 cut(s) 103, 530, 628, 993
Cfr10I RCCGGY 5 cut(s) 524, 535, 628, 815, 987
Cfr13I GGNCC 3 cut(s) 109, 165, 550
ClaI ATCGAT 1 cut(s) 1088
Csp6I GTAC 3 cut(s) 124, 677, 1044
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 5 cut(s) 94, 289, 409, 751, 851
CviQI GTAC 3 cut(s) 124, 677, 1044
DdeI CTNAG 3 cut(s) 491, 801, 1040
DpnI GATC 5 cut(s) 401, 478, 1087, 1091, 1127
DpnII GATC 5 cut(s) 399, 476, 1085, 1089, 1125
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 4 cut(s) 26, 309, 383, 686
EarI CTCTTC 4 cut(s) 26, 309, 383, 686
Eco130I CCWWGG 2 cut(s) 320, 1056
Eco24I GRGCYC 1 cut(s) 807
Eco31I GGTCTC 1 cut(s) 935
Eco47I GGWCC 3 cut(s) 109, 165, 550
Eco47III AGCGCT 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 165, 550
EcoT14I CCWWGG 2 cut(s) 320, 1056
EcoT22I ATGCAT 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 807
ErhI CCWWGG 2 cut(s) 320, 1056
FaeI CATG 5 cut(s) 97, 292, 412, 754, 854
FaqI GGGAC 1 cut(s) 563
FatI CATG 5 cut(s) 93, 288, 408, 750, 850
FauI CCCGC 3 cut(s) 120, 187, 259
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 3 cut(s) 218, 415, 470
FokI GGATG 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 3 cut(s) 218, 415, 470
FspBI CTAG 3 cut(s) 540, 554, 644
GlaI GCGC 4 cut(s) 102, 529, 627, 992
GluI GCNGC 3 cut(s) 218, 415, 470
GsaI CCCAGC 2 cut(s) 476, 1125
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 1035, 1055
HapII CCGG 9 cut(s) 453, 525, 536, 629, 669, 777, 816, 839, 988
HhaI GCGC 4 cut(s) 103, 530, 628, 993
Hin1II CATG 5 cut(s) 97, 292, 412, 754, 854
Hin6I GCGC 4 cut(s) 101, 528, 626, 991
HinP1I GCGC 4 cut(s) 101, 528, 626, 991
HincII GTYRAC 1 cut(s) 797
HindII GTYRAC 1 cut(s) 797
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 4 cut(s) 316, 708, 747, 793
HpaII CCGG 9 cut(s) 453, 525, 536, 629, 669, 777, 816, 839, 988
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 797, 1072
Hpy188I TCNGA 4 cut(s) 276, 383, 404, 654
Hpy188III TCNNGA 3 cut(s) 31, 395, 644
Hpy8I GTNNAC 2 cut(s) 797, 1072
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 37, 698
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 414, 427, 536, 914
HpyF3I CTNAG 3 cut(s) 491, 801, 1040
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 5 cut(s) 97, 292, 412, 754, 854
HspAI GCGC 4 cut(s) 101, 528, 626, 991
Kzo9I GATC 5 cut(s) 399, 476, 1085, 1089, 1125
LmnI GCTCC 2 cut(s) 343, 740
Lsp1109I GCAGC 3 cut(s) 204, 426, 481
LweI GCATC 2 cut(s) 280, 613
MaeI CTAG 3 cut(s) 540, 554, 644
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 940, 1010
MalI GATC 5 cut(s) 401, 478, 1087, 1091, 1127
MboI GATC 5 cut(s) 399, 476, 1085, 1089, 1125
MboII GAAGA 8 cut(s) 8, 13, 31, 123, 296, 370, 703, 1090
MflI RGATCY 2 cut(s) 476, 1125
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 2 cut(s) 518, 886
MlyI GAGTC 1 cut(s) 802
MnlI CCTC 7 cut(s) 166, 222, 402, 690, 919, 1045, 1103
Mph1103I ATGCAT 1 cut(s) 294
MseI TTAA 2 cut(s) 521, 758
MspA1I CMGCKG 2 cut(s) 472, 1028
MspI CCGG 9 cut(s) 453, 525, 536, 629, 669, 777, 816, 839, 988
MspR9I CCNGG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 459
MwoI GCNNNNNNNGC 5 cut(s) 156, 414, 427, 536, 914
NciI CCSGG 1 cut(s) 839
NdeII GATC 5 cut(s) 399, 476, 1085, 1089, 1125
NlaIII CATG 5 cut(s) 97, 292, 412, 754, 854
NlaIV GGNNCC 4 cut(s) 111, 166, 551, 1127
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 2 cut(s) 292, 854
PciI ACATGT 1 cut(s) 850
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 3 cut(s) 316, 708, 747
PflMI CCANNNNNTGG 1 cut(s) 1121
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 3 cut(s) 219, 416, 471
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
PpuMI RGGWCCY 2 cut(s) 165, 550
PscI ACATGT 1 cut(s) 850
Psp5II RGGWCCY 2 cut(s) 165, 550
PspFI CCCAGC 2 cut(s) 472, 1121
PspN4I GGNNCC 4 cut(s) 111, 166, 551, 1127
PspPI GGNCC 3 cut(s) 109, 165, 550
PspPPI RGGWCCY 2 cut(s) 165, 550
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 2 cut(s) 476, 1125
PvuII CAGCTG 2 cut(s) 472, 1028
RsaI GTAC 3 cut(s) 125, 678, 1045
RsaNI GTAC 3 cut(s) 124, 677, 1044
SalI GTCGAC 1 cut(s) 795
SaqAI TTAA 2 cut(s) 521, 758
SatI GCNGC 3 cut(s) 218, 415, 470
Sau3AI GATC 5 cut(s) 399, 476, 1085, 1089, 1125
Sau96I GGNCC 3 cut(s) 109, 165, 550
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 839
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 2 cut(s) 280, 613
SfcI CTRYAG 2 cut(s) 218, 918
SgrAI CRCCGGYG 2 cut(s) 628, 987
SinI GGWCC 3 cut(s) 109, 165, 550
SmlI CTYRAG 2 cut(s) 266, 1105
SmoI CTYRAG 2 cut(s) 266, 1105
Sse9I AATT 2 cut(s) 518, 886
SsiI CCGC 4 cut(s) 113, 194, 252, 762
SspMI CTAG 3 cut(s) 540, 554, 644
StyD4I CCNGG 1 cut(s) 837
StyI CCWWGG 2 cut(s) 320, 1056
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 651
TaqI TCGA 3 cut(s) 796, 884, 1088
TasI AATT 2 cut(s) 518, 886
TatI WGTACW 1 cut(s) 1043
TfiI GAWTC 3 cut(s) 316, 708, 747
Tru1I TTAA 2 cut(s) 521, 758
Tru9I TTAA 2 cut(s) 521, 758
TseI GCWGC 3 cut(s) 217, 414, 469
TspDTI ATGAA 3 cut(s) 110, 732, 739
TspGWI ACGGA 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 1121
VpaK11BI GGWCC 3 cut(s) 109, 165, 550
XapI RAATTY 1 cut(s) 886
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 2 cut(s) 292, 854
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 3 cut(s) 540, 554, 644
ZrmI AGTACT 1 cut(s) 1045
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.