Rh1DG393200

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012362
Physical Location & Seq
Forward (+)
61107800 .. 61111565
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG393200.1

Sequence Viewer

Length: 2301 bp
ATGCAACTGCCCCTACACATGGTCTTGTACTTACTCAAATCCCAAGTCAATCAATCGAACGGTCCAAACCCAAAACCCAATTCGCCTTCTTTTCTGATATTCACTTGCACATTTCCACTCAAGAAAGCTAAACACCTTGTCCTCACCACCTTCTCTTTGCTCAAGACAGAACAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAAACAGAGAAGAAGAAGAAGAAAGAAAATCCAAGCTCACCCAAAAAAATGGCCATCACAGTTTTCCTTTTCACCTTGCTATTTTTCTTCACACACCCACCGCATGTTTATGGAAACACAGAGCTGAGATCACTCATGGACATCAAGGCCCTTTTGGACCCGCAGAGTCTGTACCTTTCTTCATGGACTGTCCATGGAGACCCGTGTGACGGGTCGTTTGAAGGTATCGGGTGCAACAAAGCGGGTCGGGTTGCCAATATTTCATTGCAAGGAAAAGGGCTATCTGGGAAGCTGTCTCCTGCCGTTGGAGAGCTCAAGGATTTGACTGGGATTTACATGCATTATAACTCTTTGAAGGGAGAGATACCCAGAGAGATTGCCAACTTGACTCAGCTCAGTGACTTGTATTTGAATGTCAATAATTTAAGTGGAGAGATTCCTCCTGAGATCGGAAACATGCGCAGCTTAGAAGTTTTGCAGCTTTGCTATAATCAGCTAACTGGAAGCATACCAACGCAGCTGGGGTCTTTGAAGAACCTTGGTGTTCTTGCTCTGCAGTCCAACCAGTTAACTGGTGCAATTCCAGCAAGTTTAGGAAACTTGGAAATGCTAATGAGACTGGATTTGAGCTACAACAACCTCTTTGGTTCTATTCCCATGAAAGTAGCTGATGCACCTTTGCTTGAAGTTCTAGACATTCGGAATAATACGCTTTCTGGCAATGTACCTCTTGCTCTGAAGAGACTAAATGATGGATTCTCTTATGAAAACAATCTGGGATTGTGTGGAGCTGGATTTATGTCCTTAACAGCCTGCAACACTTCAAGTCACCTAAATGCAAGTAGACCTGAACCCTTTGGATCGACTGGGCCAACACGAGCTATCCCGGAGACTGCAAATGTGCAGTTGCCTTGCAACCAATCTCGGTGCTCGAATATGTCAAAATCCCATCAAGCATCTGTTGCTGTTGTTGTTGGTATTGTTGTATTAACAATTGCATTATCGGCTATAGGAATTCTACTCTTCACACAGCATCGTCGCCAGAAACAGAAGCTTGGGTCCTCATTTGATGTTTCTGATGCCCGCCTTAGTGTTGATGAGGCCAAGGCGAAGGGTGTAGCTCACAGGAAATATGGCTCTCCCCTTATGAGCCTCGAGTATTCTCACGGGTGGGATCCTTTAGCTGATGGGAGGAATTTAAGTGCATTTGCCCAAGACGTGTTCCATAGCTTTAAATTCAATTTGGAAGAGGTGGAGACTGCTACTCAGTATTTCTCCGAGGTGAATCTATTGGGAAAGAGTAACTTCTCTGCAACCTATAAAGGAATATTACGAGATGGGACTGTTGTGGCTGTTAAGAGCATTGGAAAAACTTGCTGCAAGACTGAGGAAGCAGAGTTCTTGAAGGGGTTGAACATGTTAACCTCATTGAGGCATGAAAATTTAGTGAAATTGAGGGGATTTTGTTGCTCAAGGGGCCGCGGAGAGTGCTTTCTCATTTATGAATTTGTTCCGAATGGAAGTTTGCTGCGATATCTTGACATCAAGGAAGGCGACAGCAATGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAGGGCATTGCTAAAGGTCTATCTTATTTACATGGATATAAGCCAAACAAACCTGCTCTTGTTCACCAAAACATTTCGGCTGAAAAGGTGCTGATTGACCAGCGATTCAACCCCTTTCTCTCAGATTCCGGACTGCACAAGCTTCTTACCAATGATGTTGTCTTCTCAGCACTCAAGGCCAGCGCCGCTATGGGATACCTAGCTCCAGAGTACACCACTACCGGACGATTTACAGAGAAAAGTGATGTTTATGCATTTGGGGTGCTTGTTTTCCAAATTCTATCAGGGAAACGGAAAGTAACCAACTCCATGCGTCTTGGTGCTGAGTCGGGCAGATTCAAAGACTATATCGACCAAAACCTCAATGGTAGGTTCTTTGAGTATGAAGCGTCCAAGCTTGCAAAGACTGCTTTGCTTTGCACCCATGATTCTCCAATTGAGAGACCATCTATGGGAGAAGTTGTTCAAGAGTTAAGTAATTGCAGCAGCTGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

766

Amino Acids

83.92

Weight (kDa)

8.97

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 108 - 148 3.3e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 165 - 304 5e-11 Leucine-rich repeat region
LRR_8 PF13855 223 - 283 6.2e-08 Leucine rich repeat
Pkinase PF00069 495 - 757 1.3e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 498 - 759 3.8e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51560
fragaria_vesca FvH4_7g28070
malus_domestica MD01G1184900.v1.1 MD07G1257200.v1.1
prunus_persica Prupe.2G281400_v2.0.a1
pyrus_communis pycom01g19660 pycom07g23010 pycom07g23020
rosa_chinensis RchiOBHm_Chr1g0375021
rosa_laevigata RLG00000026697
rosa_multiflora Rmu_sc0000554.1_g000005 Rmu_sc0017099.1_g000006
rosa_roxburghii Rroxscaffold_4G00283080
rosa_rugosa Rorug01G0387500
rosa_samantha Rh1AG398100 Rh1BG362000 Rh1CG375700 Rh1DG393200
rosa_wichuraiana Rw1G035330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
Acc16I TGCGCA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 1864
AccI GTMKAC 1 cut(s) 1051
AccII CGCG 1 cut(s) 1689
AccIII TCCGGA 1 cut(s) 1931
AciI CCGC 7 cut(s) 308, 368, 449, 1291, 1687, 1689, 1989
AclWI GGATC 3 cut(s) 1075, 1376, 1389
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 6 cut(s) 1221, 1402, 1442, 1648, 1712, 2079
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 4 cut(s) 29, 380, 933, 2015
AfiI CCNNNNNNNGG 6 cut(s) 19, 416, 512, 656, 1638, 2255
AflIII ACRYGT 2 cut(s) 1425, 1623
AjiI CACGTC 1 cut(s) 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AloI GAACNNNNNNTCC 4 cut(s) 1589, 1621, 2250, 2282
Alw21I GWGCWC 2 cut(s) 522, 1139
Alw26I GTCTC 7 cut(s) 399, 507, 817, 943, 1091, 1457, 2239
AlwI GGATC 3 cut(s) 1075, 1376, 1389
AlwNI CAGNNNCTG 2 cut(s) 376, 2292
Ama87I CYCGRG 1 cut(s) 1361
Aor13HI TCCGGA 1 cut(s) 1931
AoxI GGCC 6 cut(s) 258, 354, 1076, 1308, 1684, 1980
ApeKI GCWGC 7 cut(s) 669, 685, 724, 1584, 1735, 2286, 2289
ApoI RAATTY 6 cut(s) 1221, 1402, 1442, 1648, 1712, 2079
ArsI GACNNNNNNTTYG 4 cut(s) 30, 62, 407, 439
Asp700I GAANNNNTTC 2 cut(s) 1716, 2265
AspLEI GCGC 2 cut(s) 669, 1988
AspS9I GGNCC 6 cut(s) 62, 355, 364, 1076, 1266, 1684
AsuC2I CCSGG 1 cut(s) 1094
AsuHPI GGTGA 6 cut(s) 136, 237, 271, 1028, 1501, 1859
AvaI CYCGRG 1 cut(s) 1361
AvaII GGWCC 3 cut(s) 62, 364, 1266
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 1381
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 1083
BbsI GAAGAC 1 cut(s) 1957
Bbv12I GWGCWC 2 cut(s) 522, 1139
BbvI GCAGC 5 cut(s) 681, 697, 736, 1571, 1722
BccI CCATC 6 cut(s) 269, 953, 1164, 1388, 1538, 2257
BceAI ACGGC 1 cut(s) 494
BciVI GTATCC 1 cut(s) 1991
BcnI CCSGG 1 cut(s) 1094
BcoDI GTCTC 7 cut(s) 399, 507, 817, 943, 1091, 1457, 2239
BfaI CTAG 3 cut(s) 899, 1788, 2003
BfmI CTRYAG 2 cut(s) 761, 1215
BfoI RGCGCY 1 cut(s) 1989
BfuAI ACCTGC 1 cut(s) 1864
BfuI GTATCC 1 cut(s) 1991
BisI GCNGC 9 cut(s) 670, 686, 725, 1585, 1687, 1736, 1989, 2287, 2290
BlsI GCNGC 9 cut(s) 671, 687, 726, 1586, 1688, 1737, 1990, 2288, 2291
Bme1390I CCNGG 1 cut(s) 1094
Bme18I GGWCC 3 cut(s) 62, 364, 1266
BmeT110I CYCGRG 1 cut(s) 1361
BmgBI CACGTC 1 cut(s) 1426
BmgT120I GGNCC 6 cut(s) 62, 355, 364, 1076, 1266, 1684
BmiI GGNNCC 4 cut(s) 366, 1267, 1383, 1685
BmrFI CCNGG 1 cut(s) 1094
BmrI ACTGGG 2 cut(s) 543, 1083
BmsI GCATC 4 cut(s) 868, 1172, 1249, 1276
BmuI ACTGGG 2 cut(s) 543, 1083
BpiI GAAGAC 1 cut(s) 1957
BpmI CTGGAG 1 cut(s) 1992
BpuEI CTTGAG 5 cut(s) 104, 146, 506, 1663, 1961
BpuMI CCSGG 1 cut(s) 1094
BsaI GGTCTC 2 cut(s) 399, 2239
BsaJI CCNNGG 5 cut(s) 400, 745, 1311, 1485, 1687
BsaWI WCCGGW 2 cut(s) 1931, 2024
BsaXI ACNNNNNCTCC 2 cut(s) 2250, 2280
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 416, 512, 656, 1638, 2255
Bse1I ACTGG 6 cut(s) 538, 712, 772, 784, 831, 1078
Bse3DI GCAATG 4 cut(s) 470, 934, 1774, 1809
BseAI TCCGGA 1 cut(s) 1931
BseDI CCNNGG 5 cut(s) 400, 745, 1311, 1485, 1687
BseLI CCNNNNNNNGG 6 cut(s) 19, 416, 512, 656, 1638, 2255
BseMI GCAATG 4 cut(s) 470, 934, 1774, 1809
BseMII CTCAG 9 cut(s) 323, 611, 616, 642, 1487, 1584, 1938, 1983, 2118
BseNI ACTGG 6 cut(s) 538, 712, 772, 784, 831, 1078
BseXI GCAGC 5 cut(s) 681, 697, 736, 1571, 1722
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 2 cut(s) 1130, 1922
Bsh1236I CGCG 1 cut(s) 1689
BshFI GGCC 6 cut(s) 260, 356, 1078, 1310, 1686, 1982
BsiHKAI GWGCWC 2 cut(s) 522, 1139
BsiHKCI CYCGRG 1 cut(s) 1361
BsiSI CCGG 3 cut(s) 1094, 1932, 2025
BslFI GGGAC 1 cut(s) 1561
BslI CCNNNNNNNGG 6 cut(s) 19, 416, 512, 656, 1638, 2255
BsmAI GTCTC 7 cut(s) 399, 507, 817, 943, 1091, 1457, 2239
BsmFI GGGAC 1 cut(s) 1561
BsnI GGCC 6 cut(s) 260, 356, 1078, 1310, 1686, 1982
Bso31I GGTCTC 2 cut(s) 399, 2239
BsoBI CYCGRG 1 cut(s) 1361
Bsp1286I GDGCHC 2 cut(s) 522, 1139
Bsp13I TCCGGA 1 cut(s) 1931
Bsp143I GATC 4 cut(s) 335, 654, 1067, 1381
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 7 cut(s) 308, 368, 449, 1291, 1687, 1689, 1989
BspANI GGCC 6 cut(s) 260, 356, 1078, 1310, 1686, 1982
BspCNI CTCAG 9 cut(s) 324, 610, 615, 643, 1486, 1585, 1937, 1982, 2119
BspEI TCCGGA 1 cut(s) 1931
BspFNI CGCG 1 cut(s) 1689
BspLI GGNNCC 4 cut(s) 366, 1267, 1383, 1685
BspMAI CTGCAG 1 cut(s) 765
BspMI ACCTGC 1 cut(s) 1864
BspPI GGATC 3 cut(s) 1075, 1376, 1389
BspTNI GGTCTC 2 cut(s) 399, 2239
BsrDI GCAATG 4 cut(s) 470, 934, 1774, 1809
BsrI ACTGG 6 cut(s) 538, 712, 772, 784, 831, 1078
BssECI CCNNGG 5 cut(s) 400, 745, 1311, 1485, 1687
BssMI GATC 4 cut(s) 335, 654, 1067, 1381
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 3 cut(s) 400, 745, 1311
Bst2BI CACGAG 1 cut(s) 1083
Bst4CI ACNGT 4 cut(s) 62, 268, 397, 1552
Bst6I CTCTTC 3 cut(s) 941, 1235, 1449
BstAPI GCANNNNNTGC 2 cut(s) 1169, 2210
BstC8I GCNNGC 4 cut(s) 1021, 1291, 1984, 2202
BstDSI CCRYGG 2 cut(s) 400, 1687
BstENI CCTNNNNNAGG 1 cut(s) 1636
BstFNI CGCG 1 cut(s) 1689
BstH2I RGCGCY 1 cut(s) 1989
BstHHI GCGC 2 cut(s) 669, 1988
BstKTI GATC 4 cut(s) 338, 657, 1070, 1384
BstMAI GTCTC 7 cut(s) 399, 507, 817, 943, 1091, 1457, 2239
BstMBI GATC 4 cut(s) 335, 654, 1067, 1381
BstMWI GCNNNNNNNGC 8 cut(s) 791, 1169, 1211, 1683, 1695, 1979, 1988, 2210
BstNSI RCATGY 4 cut(s) 314, 547, 667, 1627
BstSCI CCNGG 1 cut(s) 1092
BstSFI CTRYAG 2 cut(s) 761, 1215
BstUI CGCG 1 cut(s) 1689
BstV1I GCAGC 5 cut(s) 681, 697, 736, 1571, 1722
BstV2I GAAGAC 1 cut(s) 1957
BstX2I RGATCY 1 cut(s) 1381
BstXI CCANNNNNNTGG 2 cut(s) 256, 779
BstYI RGATCY 1 cut(s) 1381
BsuI GTATCC 1 cut(s) 1991
BsuRI GGCC 6 cut(s) 260, 356, 1078, 1310, 1686, 1982
BtgI CCRYGG 2 cut(s) 400, 1687
BtrI CACGTC 1 cut(s) 1426
BtsIMutI CAGTG 1 cut(s) 610
BveI ACCTGC 1 cut(s) 1864
Cac8I GCNNGC 4 cut(s) 1021, 1291, 1984, 2202
CaiI CAGNNNCTG 2 cut(s) 376, 2292
CfoI GCGC 2 cut(s) 669, 1988
Cfr13I GGNCC 6 cut(s) 62, 355, 364, 1076, 1266, 1684
Cfr42I CCGCGG 1 cut(s) 1690
CseI GACGC 2 cut(s) 2105, 2181
Csp6I GTAC 4 cut(s) 28, 379, 932, 2014
CviQI GTAC 4 cut(s) 28, 379, 932, 2014
DpnI GATC 4 cut(s) 337, 656, 1069, 1383
DpnII GATC 4 cut(s) 335, 654, 1067, 1381
DraI TTTAAA 1 cut(s) 1441
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 3 cut(s) 941, 1235, 1449
EarI CTCTTC 3 cut(s) 941, 1235, 1449
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 3 cut(s) 400, 745, 1311
Eco24I GRGCYC 1 cut(s) 522
Eco31I GGTCTC 2 cut(s) 399, 2239
Eco32I GATATC 1 cut(s) 1742
Eco47I GGWCC 3 cut(s) 62, 364, 1266
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 1361
EcoICRI GAGCTC 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 1636
EcoO109I RGGNCCY 2 cut(s) 355, 1266
EcoRI GAATTC 1 cut(s) 1221
EcoRV GATATC 1 cut(s) 1742
EcoT14I CCWWGG 3 cut(s) 400, 745, 1311
EcoT22I ATGCAT 2 cut(s) 549, 2059
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 3 cut(s) 400, 745, 1311
FalI AAGNNNNNCTT 2 cut(s) 1496, 1528
FaqI GGGAC 1 cut(s) 1561
FauI CCCGC 3 cut(s) 375, 442, 1298
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 9 cut(s) 670, 686, 725, 1585, 1687, 1736, 1989, 2287, 2290
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 9 cut(s) 670, 686, 725, 1585, 1687, 1736, 1989, 2287, 2290
FspBI CTAG 3 cut(s) 899, 1788, 2003
FspI TGCGCA 1 cut(s) 668
GlaI GCGC 2 cut(s) 668, 1987
GluI GCNGC 9 cut(s) 670, 686, 725, 1585, 1687, 1736, 1989, 2287, 2290
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 1 cut(s) 1992
HaeII RGCGCY 1 cut(s) 1989
HaeIII GGCC 6 cut(s) 260, 356, 1078, 1310, 1686, 1982
HapII CCGG 3 cut(s) 1094, 1932, 2025
HgaI GACGC 2 cut(s) 2105, 2181
HhaI GCGC 2 cut(s) 669, 1988
Hin6I GCGC 2 cut(s) 667, 1986
HinP1I GCGC 2 cut(s) 667, 1986
HincII GTYRAC 3 cut(s) 777, 1629, 1785
HindII GTYRAC 3 cut(s) 777, 1629, 1785
HindIII AAGCTT 3 cut(s) 1259, 1943, 2198
HpaI GTTAAC 2 cut(s) 777, 1629
HpaII CCGG 3 cut(s) 1094, 1932, 2025
HphI GGTGA 6 cut(s) 136, 237, 271, 1028, 1501, 1859
Hpy166II GTNNAC 6 cut(s) 777, 1052, 1629, 1785, 1867, 2016
Hpy188I TCNGA 9 cut(s) 96, 659, 909, 945, 1285, 1486, 1722, 1927, 2300
Hpy8I GTNNAC 6 cut(s) 777, 1052, 1629, 1785, 1867, 2016
Hpy99I CGWCG 1 cut(s) 1248
HpyAV CCTTC 8 cut(s) 96, 160, 422, 556, 1312, 1606, 1751, 1798
HpyCH4III ACNGT 4 cut(s) 62, 268, 397, 1552
HpyCH4IV ACGT 1 cut(s) 1425
HpyF10VI GCNNNNNNNGC 8 cut(s) 791, 1169, 1211, 1683, 1695, 1979, 1988, 2210
HpySE526I ACGT 1 cut(s) 1425
HspAI GCGC 2 cut(s) 667, 1986
Kpn2I TCCGGA 1 cut(s) 1931
KspAI GTTAAC 2 cut(s) 777, 1629
KspI CCGCGG 1 cut(s) 1690
Kzo9I GATC 4 cut(s) 335, 654, 1067, 1381
LmnI GCTCC 2 cut(s) 995, 2011
Lsp1109I GCAGC 5 cut(s) 681, 697, 736, 1571, 1722
LweI GCATC 4 cut(s) 868, 1172, 1249, 1276
MaeI CTAG 3 cut(s) 899, 1788, 2003
MaeII ACGT 1 cut(s) 1425
MaeIII GTNAC 5 cut(s) 413, 605, 1034, 1508, 2101
MalI GATC 4 cut(s) 337, 656, 1069, 1383
MboI GATC 4 cut(s) 335, 654, 1067, 1381
MfeI CAATTG 2 cut(s) 1200, 2238
MflI RGATCY 1 cut(s) 1381
MhlI GDGCHC 2 cut(s) 522, 1139
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 3 cut(s) 382, 589, 2138
MmeI TCCRAC 2 cut(s) 493, 792
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 2 cut(s) 549, 2059
MroI TCCGGA 1 cut(s) 1931
MroXI GAANNNNTTC 2 cut(s) 1716, 2265
MscI TGGCCA 1 cut(s) 260
MseI TTAA 9 cut(s) 632, 776, 1013, 1196, 1406, 1440, 1563, 1628, 2276
MslI CAYNNNNRTG 2 cut(s) 315, 1041
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 727, 1689, 2292
MspI CCGG 3 cut(s) 1094, 1932, 2025
MspR9I CCNGG 1 cut(s) 1094
MunI CAATTG 2 cut(s) 1200, 2238
MvnI CGCG 1 cut(s) 1689
MwoI GCNNNNNNNGC 8 cut(s) 791, 1169, 1211, 1683, 1695, 1979, 1988, 2210
NciI CCSGG 1 cut(s) 1094
NcoI CCATGG 1 cut(s) 400
NdeII GATC 4 cut(s) 335, 654, 1067, 1381
NlaIV GGNNCC 4 cut(s) 366, 1267, 1383, 1685
NmuCI GTSAC 3 cut(s) 413, 605, 1034
NsbI TGCGCA 1 cut(s) 668
NsiI ATGCAT 2 cut(s) 549, 2059
NspI RCATGY 4 cut(s) 314, 547, 667, 1627
PaeR7I CTCGAG 1 cut(s) 1361
PciI ACATGT 1 cut(s) 1623
PdmI GAANNNNTTC 2 cut(s) 1716, 2265
PfeI GAWTC 7 cut(s) 643, 963, 1492, 1908, 1928, 2139, 2231
PfoI TCCNGGA 1 cut(s) 1092
PkrI GCNGC 9 cut(s) 671, 687, 726, 1586, 1688, 1737, 1990, 2288, 2291
PleI GAGTC 3 cut(s) 381, 589, 2137
PpsI GAGTC 3 cut(s) 381, 589, 2137
PpuMI RGGWCCY 1 cut(s) 1266
PscI ACATGT 1 cut(s) 1623
PsiI TTATAA 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 1266
PspFI CCCAGC 1 cut(s) 727
PspN4I GGNNCC 4 cut(s) 366, 1267, 1383, 1685
PspPI GGNCC 6 cut(s) 62, 355, 364, 1076, 1266, 1684
PspPPI RGGWCCY 1 cut(s) 1266
PspXI VCTCGAGB 1 cut(s) 1361
PstI CTGCAG 1 cut(s) 765
PstNI CAGNNNCTG 2 cut(s) 376, 2292
PsuI RGATCY 1 cut(s) 1381
PvuII CAGCTG 2 cut(s) 727, 2292
RsaI GTAC 4 cut(s) 29, 380, 933, 2015
RsaNI GTAC 4 cut(s) 28, 379, 932, 2014
RseI CAYNNNNRTG 2 cut(s) 315, 1041
SacI GAGCTC 1 cut(s) 522
SacII CCGCGG 1 cut(s) 1690
SaqAI TTAA 9 cut(s) 632, 776, 1013, 1196, 1406, 1440, 1563, 1628, 2276
SatI GCNGC 9 cut(s) 670, 686, 725, 1585, 1687, 1736, 1989, 2287, 2290
Sau3AI GATC 4 cut(s) 335, 654, 1067, 1381
Sau96I GGNCC 6 cut(s) 62, 355, 364, 1076, 1266, 1684
SchI GAGTC 3 cut(s) 382, 589, 2138
ScrFI CCNGG 1 cut(s) 1094
SduI GDGCHC 2 cut(s) 522, 1139
SfaNI GCATC 4 cut(s) 868, 1172, 1249, 1276
SfcI CTRYAG 2 cut(s) 761, 1215
Sfr274I CTCGAG 1 cut(s) 1361
Sfr303I CCGCGG 1 cut(s) 1690
SgrBI CCGCGG 1 cut(s) 1690
SinI GGWCC 3 cut(s) 62, 364, 1266
SlaI CTCGAG 1 cut(s) 1361
SmiMI CAYNNNNRTG 2 cut(s) 315, 1041
SmlI CTYRAG 6 cut(s) 119, 161, 521, 1361, 1678, 1976
SmoI CTYRAG 6 cut(s) 119, 161, 521, 1361, 1678, 1976
SsiI CCGC 7 cut(s) 308, 368, 449, 1291, 1687, 1689, 1989
SspI AATATT 2 cut(s) 466, 1536
SspMI CTAG 3 cut(s) 899, 1788, 2003
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 1092
StyI CCWWGG 3 cut(s) 400, 745, 1311
TaaI ACNGT 4 cut(s) 62, 268, 397, 1552
TaiI ACGT 1 cut(s) 1428
TaqI TCGA 5 cut(s) 56, 1070, 1139, 1362, 2154
TatI WGTACW 2 cut(s) 27, 2013
TauI GCSGC 2 cut(s) 1689, 1991
TfiI GAWTC 7 cut(s) 643, 963, 1492, 1908, 1928, 2139, 2231
Tru1I TTAA 9 cut(s) 632, 776, 1013, 1196, 1406, 1440, 1563, 1628, 2276
Tru9I TTAA 9 cut(s) 632, 776, 1013, 1196, 1406, 1440, 1563, 1628, 2276
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 3 cut(s) 413, 605, 1034
TseI GCWGC 7 cut(s) 669, 685, 724, 1584, 1735, 2286, 2289
Tsp45I GTSAC 3 cut(s) 413, 605, 1034
TspDTI ATGAA 7 cut(s) 378, 459, 881, 987, 1659, 1725, 2202
TspGWI ACGGA 1 cut(s) 2110
TspRI CASTG 1 cut(s) 610
VpaK11BI GGWCC 3 cut(s) 62, 364, 1266
XagI CCTNNNNNAGG 1 cut(s) 1636
XapI RAATTY 6 cut(s) 1221, 1402, 1442, 1648, 1712, 2079
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 4 cut(s) 314, 547, 667, 1627
XcmI CCANNNNNNNNNTGG 2 cut(s) 1990, 2165
XhoI CTCGAG 1 cut(s) 1361
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 2 cut(s) 1716, 2265
XspI CTAG 3 cut(s) 899, 1788, 2003
Zsp2I ATGCAT 2 cut(s) 549, 2059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.