Rorug01G0387500

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012362
Physical Location & Seq
Reverse (-)
49874605 .. 49875290
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0387500.1

Sequence Viewer

Length: 555 bp
ATGGATGAAAATATGTCAGGGTTTTGTATTAAAAGTATTCGCGGTGGCGGGGGCGGTGGTGGTAATGGTGGTAATAACAAGTGTGGGCGTTGGAATCCTACTACTGAGCAGGTCAAAGTTTTGACGGACCTGTTCAGGTCTGGACTCCGAACCCCCAGCACTGATCAGATTCAGAAAATCTCTACTCAGTTAAGCTTTTATGGAAAGATCGAGAGCAAGAATGTATTCTACTGGTTCCAGAATCACAAAGCCAGGGAGAGGCAGAAGCGCCGCAAAGTTTCCATTGATATCGACAAGGAGTTCATACGTCGAGATCATGACAAGATTTCTTCTCCAAAAGAAGTGCTTAATCAAGTTAGTTCAGAGCCTGCAAGAGTGATTGAGACGCTTCAACTCTTCCCAATAAACTCATTCGATGAATCAGGAGCAGAGAAGCTGAGATTTTATGCAAATGAGTTTTGTTGCAAAGAGAATACTAGAGGTTTTACTTACACTGTTGGGGCAGAAATGGATCATCATCATCCACCTTTGGATCTACGCTTAAGCTTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

184

Amino Acids

21.05

Weight (kDa)

9.06

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 28 - 88 2.5e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51560
fragaria_vesca FvH4_7g28070
malus_domestica MD01G1184900.v1.1 MD07G1257200.v1.1
prunus_persica Prupe.2G281400_v2.0.a1
pyrus_communis pycom01g19660 pycom07g23010 pycom07g23020
rosa_chinensis RchiOBHm_Chr1g0375021
rosa_laevigata RLG00000026697
rosa_multiflora Rmu_sc0000554.1_g000005 Rmu_sc0017099.1_g000006
rosa_roxburghii Rroxscaffold_4G00283080
rosa_rugosa Rorug01G0387500
rosa_samantha Rh1AG398100 Rh1BG362000 Rh1CG375700 Rh1DG393200
rosa_wichuraiana Rw1G035330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccII CGCG 1 cut(s) 42
AciI CCGC 4 cut(s) 42, 48, 54, 271
AclWI GGATC 2 cut(s) 519, 540
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 541
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 195, 436, 546
AluI AGCT 3 cut(s) 195, 436, 546
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 2 cut(s) 519, 540
AlwNI CAGNNNCTG 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 253
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 271
BfrI CTTAAG 1 cut(s) 541
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 10, 520
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 96, 200, 428
BseNI ACTGG 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
Bsp143I GATC 5 cut(s) 163, 207, 313, 511, 532
BspACI CCGC 4 cut(s) 42, 48, 54, 271
BspCNI CTCAG 3 cut(s) 97, 199, 429
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 519, 540
BspTI CTTAAG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 5 cut(s) 163, 207, 313, 511, 532
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 496
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 105, 186, 437
BstF5I GGATG 2 cut(s) 10, 520
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 5 cut(s) 166, 210, 316, 514, 535
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 5 cut(s) 163, 207, 313, 511, 532
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BtsCI GGATG 2 cut(s) 10, 520
BtsIMutI CAGTG 2 cut(s) 159, 492
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 394
CviAII CATG 1 cut(s) 317
CviJI RGCY 5 cut(s) 195, 251, 367, 436, 546
CviKI_1 RGCY 5 cut(s) 195, 251, 367, 436, 546
DdeI CTNAG 3 cut(s) 105, 186, 437
DpnI GATC 5 cut(s) 165, 209, 315, 513, 534
DpnII GATC 5 cut(s) 163, 207, 313, 511, 532
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 251
EcoRV GATATC 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 14, 201, 305, 318, 447
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 1 cut(s) 316
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 2 cut(s) 17, 507
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 271
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 271
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 193, 544
HinfI GANTC 5 cut(s) 94, 144, 169, 241, 419
Hpy188I TCNGA 4 cut(s) 149, 168, 174, 364
Hpy188III TCNNGA 6 cut(s) 141, 211, 238, 311, 317, 423
Hpy99I CGWCG 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 371, 449, 465
HpyF3I CTNAG 3 cut(s) 105, 186, 437
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 5 cut(s) 163, 207, 313, 511, 532
LmnI GCTCC 1 cut(s) 425
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 307
MalI GATC 5 cut(s) 165, 209, 315, 513, 534
MboI GATC 5 cut(s) 163, 207, 313, 511, 532
MboII GAAGA 2 cut(s) 321, 388
MflI RGATCY 1 cut(s) 532
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 2 cut(s) 252, 473
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 4 cut(s) 30, 191, 348, 542
MspCI CTTAAG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 42
NdeII GATC 5 cut(s) 163, 207, 313, 511, 532
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 1 cut(s) 236
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 4 cut(s) 94, 169, 241, 419
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 532
SaqAI TTAA 4 cut(s) 30, 191, 348, 542
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 5 cut(s) 163, 207, 313, 511, 532
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 253
SetI ASST 9 cut(s) 114, 132, 140, 197, 310, 438, 484, 529, 548
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SsiI CCGC 4 cut(s) 42, 48, 54, 271
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 310
TaqI TCGA 4 cut(s) 210, 291, 310, 414
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 4 cut(s) 94, 169, 241, 419
Tru1I TTAA 4 cut(s) 30, 191, 348, 542
Tru9I TTAA 4 cut(s) 30, 191, 348, 542
TscAI CASTG 2 cut(s) 166, 499
TspDTI ATGAA 3 cut(s) 21, 292, 432
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 166, 499
Vha464I CTTAAG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.