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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53440 AT5G53440 |
| fragaria_vesca | FvH4_7g31740 FvH4_7g31740 FvH4_7g31740 |
| malus_domestica | MD01G1219900.v1.1 MD07G1290200.v1.1 |
| prunus_persica | Prupe.2G311300_v2.0.a1 Prupe.2G311300_v2.0.a1 Prupe.2G311300_v2.0.a1 |
| pyrus_communis | pycom01g22970 pycom01g22980 pycom07g26280 |
| rosa_chinensis | RchiOBHm_Chr1g0380961 |
| rosa_laevigata | RLG00000026256 |
| rosa_multiflora | Rmu_sc0002962.1_g000023 Rmu_sc0031952.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00278900 |
| rosa_rugosa | Rorug01G0425800 Rorug01G0425900 |
| rosa_samantha | Rh1AG449900 Rh1BG405700 Rh1CG419700 Rh1DG436200 |
| rosa_wichuraiana | Rw1G039190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2973, 3144 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3236 |
| Acc36I | ACCTGC | 2 cut(s) | 1749, 3424 |
| Acc65I | GGTACC | 1 cut(s) | 3193 |
| AccB1I | GGYRCC | 5 cut(s) | 2176, 2387, 2596, 3173, 3193 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2231 |
| AccBSI | CCGCTC | 3 cut(s) | 114, 1135, 2827 |
| AccI | GTMKAC | 2 cut(s) | 1434, 1902 |
| AccII | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| AccIII | TCCGGA | 1 cut(s) | 1294 |
| AcoI | YGGCCR | 1 cut(s) | 2315 |
| AcsI | RAATTY | 1 cut(s) | 2628 |
| AcyI | GRCGYC | 2 cut(s) | 2597, 3174 |
| AdeI | CACNNNGTG | 1 cut(s) | 3220 |
| AfaI | GTAC | 9 cut(s) | 13, 59, 1346, 1505, 1625, 1763, 2493, 3195, 3622 |
| AflIII | ACRYGT | 1 cut(s) | 2409 |
| AhlI | ACTAGT | 1 cut(s) | 422 |
| AjnI | CCWGG | 7 cut(s) | 50, 794, 978, 2347, 2616, 2710, 3339 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2119, 2151 |
| Alw21I | GWGCWC | 2 cut(s) | 1256, 2056 |
| Alw26I | GTCTC | 5 cut(s) | 1149, 1179, 1633, 1737, 3178 |
| Alw44I | GTGCAC | 1 cut(s) | 2052 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3509 |
| Aor13HI | TCCGGA | 1 cut(s) | 1294 |
| AoxI | GGCC | 4 cut(s) | 1179, 1992, 2315, 2350 |
| ApaLI | GTGCAC | 1 cut(s) | 2052 |
| ApeKI | GCWGC | 4 cut(s) | 906, 2558, 3419, 3422 |
| ApoI | RAATTY | 1 cut(s) | 2628 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1673, 1705 |
| AsiSI | GCGATCGC | 1 cut(s) | 1015 |
| Asp718I | GGTACC | 1 cut(s) | 3193 |
| AspLEI | GCGC | 4 cut(s) | 246, 885, 2599, 3176 |
| AsuC2I | CCSGG | 4 cut(s) | 202, 845, 2304, 3107 |
| AsuII | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| AxyI | CCTNAGG | 1 cut(s) | 2802 |
| BaeGI | GKGCMC | 2 cut(s) | 2056, 2179 |
| BamHI | GGATCC | 1 cut(s) | 3295 |
| BanI | GGYRCC | 5 cut(s) | 2176, 2387, 2596, 3173, 3193 |
| BanII | GRGCYC | 1 cut(s) | 2834 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1945, 1977 |
| BauI | CACGAG | 2 cut(s) | 2457, 3215 |
| BbsI | GAAGAC | 3 cut(s) | 750, 1683, 1953 |
| Bbv12I | GWGCWC | 2 cut(s) | 1256, 2056 |
| BbvI | GCAGC | 4 cut(s) | 918, 2545, 3431, 3434 |
| BceAI | ACGGC | 1 cut(s) | 1436 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2983, 3017, 3380, 3414 |
| BciT130I | CCWGG | 7 cut(s) | 52, 796, 980, 2349, 2618, 2712, 3341 |
| BciVI | GTATCC | 3 cut(s) | 784, 1980, 3594 |
| BclI | TGATCA | 1 cut(s) | 298 |
| BcnI | CCSGG | 4 cut(s) | 202, 845, 2304, 3107 |
| BcoDI | GTCTC | 5 cut(s) | 1149, 1179, 1633, 1737, 3178 |
| BcuI | ACTAGT | 1 cut(s) | 422 |
| BfaI | CTAG | 6 cut(s) | 423, 731, 1257, 1326, 1578, 3483 |
| BfmI | CTRYAG | 1 cut(s) | 3417 |
| BfoI | RGCGCY | 3 cut(s) | 886, 2600, 3177 |
| BfuAI | ACCTGC | 2 cut(s) | 1749, 3424 |
| BfuI | GTATCC | 3 cut(s) | 784, 1980, 3594 |
| BglII | AGATCT | 2 cut(s) | 1289, 1409 |
| BisI | GCNGC | 9 cut(s) | 196, 242, 907, 1492, 2315, 2559, 3420, 3423, 3495 |
| BlpI | GCTNAGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 9 cut(s) | 197, 243, 908, 1493, 2316, 2560, 3421, 3424, 3496 |
| BmcAI | AGTACT | 1 cut(s) | 59 |
| BmrI | ACTGGG | 1 cut(s) | 1877 |
| BmuI | ACTGGG | 1 cut(s) | 1877 |
| BpiI | GAAGAC | 3 cut(s) | 750, 1683, 1953 |
| BpmI | CTGGAG | 6 cut(s) | 1566, 1620, 2032, 3036, 3120, 3209 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 237 |
| Bpu14I | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| BpuMI | CCSGG | 4 cut(s) | 202, 845, 2304, 3107 |
| BsaHI | GRCGYC | 2 cut(s) | 2597, 3174 |
| BsaI | GGTCTC | 4 cut(s) | 1149, 1179, 1633, 1737 |
| BsaJI | CCNNGG | 9 cut(s) | 5, 51, 1632, 1701, 1830, 2605, 3177, 3333, 3528 |
| BsaWI | WCCGGW | 1 cut(s) | 1294 |
| Bse1I | ACTGG | 8 cut(s) | 1780, 1872, 2049, 2141, 3192, 3197, 3263, 3514 |
| Bse21I | CCTNAGG | 1 cut(s) | 2802 |
| Bse3DI | GCAATG | 4 cut(s) | 600, 1575, 3073, 3085 |
| BseAI | TCCGGA | 1 cut(s) | 1294 |
| BseBI | CCWGG | 7 cut(s) | 52, 796, 980, 2349, 2618, 2712, 3341 |
| BseDI | CCNNGG | 9 cut(s) | 5, 51, 1632, 1701, 1830, 2605, 3177, 3333, 3528 |
| BseMI | GCAATG | 4 cut(s) | 600, 1575, 3073, 3085 |
| BseMII | CTCAG | 5 cut(s) | 1427, 1848, 2283, 2541, 2793 |
| BseNI | ACTGG | 8 cut(s) | 1780, 1872, 2049, 2141, 3192, 3197, 3263, 3514 |
| BseRI | GAGGAG | 7 cut(s) | 22, 519, 1965, 2658, 3033, 3110, 3194 |
| BseSI | GKGCMC | 2 cut(s) | 2056, 2179 |
| BseXI | GCAGC | 4 cut(s) | 918, 2545, 3431, 3434 |
| BseYI | CCCAGC | 1 cut(s) | 2579 |
| BsgI | GTGCAG | 2 cut(s) | 2573, 3242 |
| Bsh1236I | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1015, 1057 |
| BshFI | GGCC | 4 cut(s) | 1181, 1994, 2317, 2352 |
| BshNI | GGYRCC | 5 cut(s) | 2176, 2387, 2596, 3173, 3193 |
| BsiEI | CGRYCG | 2 cut(s) | 1015, 1057 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1256, 2056 |
| BsiSI | CCGG | 6 cut(s) | 201, 844, 1295, 1995, 2304, 3107 |
| BsmAI | GTCTC | 5 cut(s) | 1149, 1179, 1633, 1737, 3178 |
| BsmI | GAATGC | 3 cut(s) | 2121, 2458, 3264 |
| BsnI | GGCC | 4 cut(s) | 1181, 1994, 2317, 2352 |
| Bso31I | GGTCTC | 4 cut(s) | 1149, 1179, 1633, 1737 |
| Bsp119I | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1256, 2056, 2179, 2834 |
| Bsp13I | TCCGGA | 1 cut(s) | 1294 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 237 |
| Bsp19I | CCATGG | 3 cut(s) | 1632, 1830, 2605 |
| Bsp68I | TCGCGA | 2 cut(s) | 1011, 1053 |
| BspANI | GGCC | 4 cut(s) | 1181, 1994, 2317, 2352 |
| BspCNI | CTCAG | 5 cut(s) | 1426, 1849, 2284, 2540, 2794 |
| BspEI | TCCGGA | 1 cut(s) | 1294 |
| BspFNI | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| BspHI | TCATGA | 3 cut(s) | 1003, 1165, 2698 |
| BspMAI | CTGCAG | 1 cut(s) | 3421 |
| BspMI | ACCTGC | 2 cut(s) | 1749, 3424 |
| BspT104I | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| BspT107I | GGYRCC | 5 cut(s) | 2176, 2387, 2596, 3173, 3193 |
| BspTNI | GGTCTC | 4 cut(s) | 1149, 1179, 1633, 1737 |
| BsrBI | CCGCTC | 3 cut(s) | 114, 1135, 2827 |
| BsrDI | GCAATG | 4 cut(s) | 600, 1575, 3073, 3085 |
| BsrI | ACTGG | 8 cut(s) | 1780, 1872, 2049, 2141, 3192, 3197, 3263, 3514 |
| BssECI | CCNNGG | 9 cut(s) | 5, 51, 1632, 1701, 1830, 2605, 3177, 3333, 3528 |
| BssNI | GRCGYC | 2 cut(s) | 2597, 3174 |
| BssSI | CACGAG | 2 cut(s) | 2457, 3215 |
| BssT1I | CCWWGG | 5 cut(s) | 1632, 1701, 1830, 2605, 3528 |
| Bst2BI | CACGAG | 2 cut(s) | 2457, 3215 |
| Bst2UI | CCWGG | 7 cut(s) | 52, 796, 980, 2349, 2618, 2712, 3341 |
| Bst4CI | ACNGT | 6 cut(s) | 1028, 1094, 1124, 1172, 1190, 2641 |
| Bst6I | CTCTTC | 5 cut(s) | 102, 359, 407, 694, 959 |
| BstACI | GRCGYC | 2 cut(s) | 2597, 3174 |
| BstBI | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| BstC8I | GCNNGC | 7 cut(s) | 32, 904, 1151, 1425, 2441, 2556, 3154 |
| BstDEI | CTNAG | 6 cut(s) | 237, 1413, 1857, 2292, 2527, 2802 |
| BstDSI | CCRYGG | 3 cut(s) | 1632, 1830, 2605 |
| BstFNI | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| BstH2I | RGCGCY | 3 cut(s) | 886, 2600, 3177 |
| BstHHI | GCGC | 4 cut(s) | 246, 885, 2599, 3176 |
| BstMAI | GTCTC | 5 cut(s) | 1149, 1179, 1633, 1737, 3178 |
| BstMCI | CGRYCG | 2 cut(s) | 1015, 1057 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1311, 1458, 2127, 3020, 3158, 3500, 3551 |
| BstNI | CCWGG | 7 cut(s) | 52, 796, 980, 2349, 2618, 2712, 3341 |
| BstNSI | RCATGY | 2 cut(s) | 2413, 3237 |
| BstSFI | CTRYAG | 1 cut(s) | 3417 |
| BstSLI | GKGCMC | 2 cut(s) | 2056, 2179 |
| BstUI | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| BstV1I | GCAGC | 4 cut(s) | 918, 2545, 3431, 3434 |
| BstV2I | GAAGAC | 3 cut(s) | 750, 1683, 1953 |
| BstX2I | RGATCY | 7 cut(s) | 968, 975, 1289, 1409, 1628, 2620, 3295 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1651, 2325, 3080 |
| BstYI | RGATCY | 7 cut(s) | 968, 975, 1289, 1409, 1628, 2620, 3295 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2802 |
| BsuI | GTATCC | 3 cut(s) | 784, 1980, 3594 |
| BsuRI | GGCC | 4 cut(s) | 1181, 1994, 2317, 2352 |
| BtgI | CCRYGG | 3 cut(s) | 1632, 1830, 2605 |
| BtgZI | GCGATG | 2 cut(s) | 1320, 2975 |
| BtsI | GCAGTG | 5 cut(s) | 319, 1321, 1828, 2822, 3156 |
| BtsIMutI | CAGTG | 9 cut(s) | 319, 1321, 1828, 1854, 1865, 2056, 2148, 2822, 3156 |
| BtuMI | TCGCGA | 2 cut(s) | 1011, 1053 |
| BveI | ACCTGC | 2 cut(s) | 1749, 3424 |
| Cac8I | GCNNGC | 7 cut(s) | 32, 904, 1151, 1425, 2441, 2556, 3154 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3509 |
| CciI | TCATGA | 3 cut(s) | 1003, 1165, 2698 |
| CfoI | GCGC | 4 cut(s) | 246, 885, 2599, 3176 |
| CseI | GACGC | 2 cut(s) | 3140, 3226 |
| CsiI | ACCWGGT | 1 cut(s) | 2710 |
| Csp6I | GTAC | 9 cut(s) | 12, 58, 1345, 1504, 1624, 1762, 2492, 3194, 3621 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3300, 3335 |
| CviQI | GTAC | 9 cut(s) | 12, 58, 1345, 1504, 1624, 1762, 2492, 3194, 3621 |
| DdeI | CTNAG | 6 cut(s) | 237, 1413, 1857, 2292, 2527, 2802 |
| DinI | GGCGCC | 2 cut(s) | 2598, 3175 |
| DraI | TTTAAA | 2 cut(s) | 132, 633 |
| DraIII | CACNNNGTG | 1 cut(s) | 3220 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3236 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3236 |
| EaeI | YGGCCR | 1 cut(s) | 2315 |
| Eam1104I | CTCTTC | 5 cut(s) | 102, 359, 407, 694, 959 |
| EarI | CTCTTC | 5 cut(s) | 102, 359, 407, 694, 959 |
| Eco130I | CCWWGG | 5 cut(s) | 1632, 1701, 1830, 2605, 3528 |
| Eco24I | GRGCYC | 1 cut(s) | 2834 |
| Eco31I | GGTCTC | 4 cut(s) | 1149, 1179, 1633, 1737 |
| Eco81I | CCTNAGG | 1 cut(s) | 2802 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1876, 2351, 2916 |
| EcoRII | CCWGG | 7 cut(s) | 50, 794, 978, 2347, 2616, 2710, 3339 |
| EcoT14I | CCWWGG | 5 cut(s) | 1632, 1701, 1830, 2605, 3528 |
| EcoT22I | ATGCAT | 1 cut(s) | 2163 |
| EcoT38I | GRGCYC | 1 cut(s) | 2834 |
| EgeI | GGCGCC | 2 cut(s) | 2598, 3175 |
| EheI | GGCGCC | 2 cut(s) | 2598, 3175 |
| ErhI | CCWWGG | 5 cut(s) | 1632, 1701, 1830, 2605, 3528 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1720, 1752, 1810, 1842, 2119, 2151 |
| FauI | CCCGC | 2 cut(s) | 281, 1128 |
| FauNDI | CATATG | 1 cut(s) | 2280 |
| FbaI | TGATCA | 1 cut(s) | 298 |
| FblI | GTMKAC | 2 cut(s) | 1434, 1902 |
| Fnu4HI | GCNGC | 9 cut(s) | 196, 242, 907, 1492, 2315, 2559, 3420, 3423, 3495 |
| FriOI | GRGCYC | 1 cut(s) | 2834 |
| Fsp4HI | GCNGC | 9 cut(s) | 196, 242, 907, 1492, 2315, 2559, 3420, 3423, 3495 |
| FspBI | CTAG | 6 cut(s) | 423, 731, 1257, 1326, 1578, 3483 |
| GlaI | GCGC | 4 cut(s) | 245, 884, 2598, 3175 |
| GluI | GCNGC | 9 cut(s) | 196, 242, 907, 1492, 2315, 2559, 3420, 3423, 3495 |
| GsaI | CCCAGC | 1 cut(s) | 2583 |
| GsuI | CTGGAG | 6 cut(s) | 1566, 1620, 2032, 3036, 3120, 3209 |
| HaeII | RGCGCY | 3 cut(s) | 886, 2600, 3177 |
| HaeIII | GGCC | 4 cut(s) | 1181, 1994, 2317, 2352 |
| HapII | CCGG | 6 cut(s) | 201, 844, 1295, 1995, 2304, 3107 |
| HgaI | GACGC | 2 cut(s) | 3140, 3226 |
| HhaI | GCGC | 4 cut(s) | 246, 885, 2599, 3176 |
| Hin1I | GRCGYC | 2 cut(s) | 2597, 3174 |
| Hin6I | GCGC | 4 cut(s) | 244, 883, 2597, 3174 |
| HinP1I | GCGC | 4 cut(s) | 244, 883, 2597, 3174 |
| HindIII | AAGCTT | 3 cut(s) | 161, 1425, 2771 |
| HpaII | CCGG | 6 cut(s) | 201, 844, 1295, 1995, 2304, 3107 |
| Hpy166II | GTNNAC | 6 cut(s) | 1061, 1435, 1903, 2054, 2655, 3623 |
| Hpy8I | GTNNAC | 6 cut(s) | 1061, 1435, 1903, 2054, 2655, 3623 |
| HpyCH4III | ACNGT | 6 cut(s) | 1028, 1094, 1124, 1172, 1190, 2641 |
| HpyCH4IV | ACGT | 2 cut(s) | 595, 2056 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1311, 1458, 2127, 3020, 3158, 3500, 3551 |
| HpyF3I | CTNAG | 6 cut(s) | 237, 1413, 1857, 2292, 2527, 2802 |
| HpySE526I | ACGT | 2 cut(s) | 595, 2056 |
| Hsp92I | GRCGYC | 2 cut(s) | 2597, 3174 |
| HspAI | GCGC | 4 cut(s) | 244, 883, 2597, 3174 |
| KasI | GGCGCC | 2 cut(s) | 2596, 3173 |
| Kpn2I | TCCGGA | 1 cut(s) | 1294 |
| KpnI | GGTACC | 1 cut(s) | 3197 |
| Ksp22I | TGATCA | 1 cut(s) | 298 |
| Lsp1109I | GCAGC | 4 cut(s) | 918, 2545, 3431, 3434 |
| MabI | ACCWGGT | 1 cut(s) | 2710 |
| MaeI | CTAG | 6 cut(s) | 423, 731, 1257, 1326, 1578, 3483 |
| MaeII | ACGT | 2 cut(s) | 595, 2056 |
| MaeIII | GTNAC | 8 cut(s) | 1028, 1088, 1233, 1416, 2057, 2306, 2706, 3505 |
| MbiI | CCGCTC | 3 cut(s) | 114, 1135, 2827 |
| MfeI | CAATTG | 2 cut(s) | 2835, 3468 |
| MflI | RGATCY | 7 cut(s) | 968, 975, 1289, 1409, 1628, 2620, 3295 |
| MhlI | GDGCHC | 4 cut(s) | 1256, 2056, 2179, 2834 |
| Mly113I | GGCGCC | 2 cut(s) | 2597, 3174 |
| MmeI | TCCRAC | 2 cut(s) | 2191, 3578 |
| Mph1103I | ATGCAT | 1 cut(s) | 2163 |
| MroI | TCCGGA | 1 cut(s) | 1294 |
| MseI | TTAA | 7 cut(s) | 131, 632, 1398, 2256, 2750, 3518, 3593 |
| MspA1I | CMGCKG | 1 cut(s) | 2475 |
| MspI | CCGG | 6 cut(s) | 201, 844, 1295, 1995, 2304, 3107 |
| MunI | CAATTG | 2 cut(s) | 2835, 3468 |
| Mva1269I | GAATGC | 3 cut(s) | 2121, 2458, 3264 |
| MvaI | CCWGG | 7 cut(s) | 52, 796, 980, 2349, 2618, 2712, 3341 |
| MvnI | CGCG | 5 cut(s) | 1011, 1053, 1065, 1149, 1305 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1311, 1458, 2127, 3020, 3158, 3500, 3551 |
| NarI | GGCGCC | 2 cut(s) | 2597, 3174 |
| NciI | CCSGG | 4 cut(s) | 202, 845, 2304, 3107 |
| NcoI | CCATGG | 3 cut(s) | 1632, 1830, 2605 |
| NdeI | CATATG | 1 cut(s) | 2280 |
| NmeAIII | GCCGAG | 2 cut(s) | 30, 3202 |
| NmuCI | GTSAC | 6 cut(s) | 1028, 1088, 1233, 1416, 2306, 2706 |
| NruI | TCGCGA | 2 cut(s) | 1011, 1053 |
| NsiI | ATGCAT | 1 cut(s) | 2163 |
| NspI | RCATGY | 2 cut(s) | 2413, 3237 |
| NspV | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| PagI | TCATGA | 3 cut(s) | 1003, 1165, 2698 |
| PciI | ACATGT | 1 cut(s) | 2409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3341 |
| PctI | GAATGC | 3 cut(s) | 2121, 2458, 3264 |
| PflFI | GACNNNGTC | 1 cut(s) | 1788 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2231 |
| PfoI | TCCNGGA | 2 cut(s) | 200, 978 |
| PkrI | GCNGC | 9 cut(s) | 197, 243, 908, 1493, 2316, 2560, 3421, 3424, 3496 |
| Ple19I | CGATCG | 2 cut(s) | 1015, 1057 |
| PluTI | GGCGCC | 2 cut(s) | 2600, 3177 |
| PpuMI | RGGWCCY | 2 cut(s) | 1876, 2916 |
| PscI | ACATGT | 1 cut(s) | 2409 |
| PsiI | TTATAA | 2 cut(s) | 2973, 3144 |
| Psp5II | RGGWCCY | 2 cut(s) | 1876, 2916 |
| Psp6I | CCWGG | 7 cut(s) | 50, 794, 978, 2347, 2616, 2710, 3339 |
| PspFI | CCCAGC | 1 cut(s) | 2579 |
| PspGI | CCWGG | 7 cut(s) | 50, 794, 978, 2347, 2616, 2710, 3339 |
| PspPPI | RGGWCCY | 2 cut(s) | 1876, 2916 |
| PstI | CTGCAG | 1 cut(s) | 3421 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3509 |
| PsuI | RGATCY | 7 cut(s) | 968, 975, 1289, 1409, 1628, 2620, 3295 |
| PsyI | GACNNNGTC | 1 cut(s) | 1788 |
| PvuI | CGATCG | 2 cut(s) | 1015, 1057 |
| RgaI | GCGATCGC | 1 cut(s) | 1015 |
| RruI | TCGCGA | 2 cut(s) | 1011, 1053 |
| RsaI | GTAC | 9 cut(s) | 13, 59, 1346, 1505, 1625, 1763, 2493, 3195, 3622 |
| RsaNI | GTAC | 9 cut(s) | 12, 58, 1345, 1504, 1624, 1762, 2492, 3194, 3621 |
| SaqAI | TTAA | 7 cut(s) | 131, 632, 1398, 2256, 2750, 3518, 3593 |
| SatI | GCNGC | 9 cut(s) | 196, 242, 907, 1492, 2315, 2559, 3420, 3423, 3495 |
| ScaI | AGTACT | 1 cut(s) | 59 |
| SduI | GDGCHC | 4 cut(s) | 1256, 2056, 2179, 2834 |
| SexAI | ACCWGGT | 1 cut(s) | 2710 |
| SfaAI | GCGATCGC | 1 cut(s) | 1015 |
| SfcI | CTRYAG | 1 cut(s) | 3417 |
| SfoI | GGCGCC | 2 cut(s) | 2598, 3175 |
| SfuI | TTCGAA | 3 cut(s) | 323, 481, 1514 |
| SgfI | GCGATCGC | 1 cut(s) | 1015 |
| SmiI | ATTTAAAT | 1 cut(s) | 633 |
| SpeI | ACTAGT | 1 cut(s) | 422 |
| SspDI | GGCGCC | 2 cut(s) | 2596, 3173 |
| SspMI | CTAG | 6 cut(s) | 423, 731, 1257, 1326, 1578, 3483 |
| StyI | CCWWGG | 5 cut(s) | 1632, 1701, 1830, 2605, 3528 |
| SwaI | ATTTAAAT | 1 cut(s) | 633 |
| TaaI | ACNGT | 6 cut(s) | 1028, 1094, 1124, 1172, 1190, 2641 |
| TaiI | ACGT | 2 cut(s) | 598, 2059 |
| TatI | WGTACW | 6 cut(s) | 11, 57, 1503, 1623, 2491, 3620 |
| TauI | GCSGC | 5 cut(s) | 198, 244, 1494, 2317, 3497 |
| Tru1I | TTAA | 7 cut(s) | 131, 632, 1398, 2256, 2750, 3518, 3593 |
| Tru9I | TTAA | 7 cut(s) | 131, 632, 1398, 2256, 2750, 3518, 3593 |
| TscAI | CASTG | 9 cut(s) | 319, 1321, 1828, 1861, 1872, 2056, 2148, 2822, 3163 |
| TseFI | GTSAC | 6 cut(s) | 1028, 1088, 1233, 1416, 2306, 2706 |
| TseI | GCWGC | 4 cut(s) | 906, 2558, 3419, 3422 |
| Tsp45I | GTSAC | 6 cut(s) | 1028, 1088, 1233, 1416, 2306, 2706 |
| TspGWI | ACGGA | 2 cut(s) | 587, 1801 |
| TspRI | CASTG | 9 cut(s) | 319, 1321, 1828, 1861, 1872, 2056, 2148, 2822, 3163 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1788 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2231 |
| VneI | GTGCAC | 1 cut(s) | 2052 |
| XapI | RAATTY | 1 cut(s) | 2628 |
| XbaI | TCTAGA | 2 cut(s) | 730, 1325 |
| XceI | RCATGY | 2 cut(s) | 2413, 3237 |
| XmiI | GTMKAC | 2 cut(s) | 1434, 1902 |
| XspI | CTAG | 6 cut(s) | 423, 731, 1257, 1326, 1578, 3483 |
| ZrmI | AGTACT | 1 cut(s) | 59 |
| Zsp2I | ATGCAT | 1 cut(s) | 2163 |