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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53440 AT5G53440 |
| fragaria_vesca | FvH4_7g31740 FvH4_7g31740 FvH4_7g31740 |
| malus_domestica | MD01G1219900.v1.1 MD07G1290200.v1.1 |
| prunus_persica | Prupe.2G311300_v2.0.a1 Prupe.2G311300_v2.0.a1 Prupe.2G311300_v2.0.a1 |
| pyrus_communis | pycom01g22970 pycom01g22980 pycom07g26280 |
| rosa_chinensis | RchiOBHm_Chr1g0380961 |
| rosa_laevigata | RLG00000026256 |
| rosa_multiflora | Rmu_sc0002962.1_g000023 Rmu_sc0031952.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00278900 |
| rosa_rugosa | Rorug01G0425800 Rorug01G0425900 |
| rosa_samantha | Rh1AG449900 Rh1BG405700 Rh1CG419700 Rh1DG436200 |
| rosa_wichuraiana | Rw1G039190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2488, 3361 |
| Acc65I | GGTACC | 1 cut(s) | 1065 |
| AccB1I | GGYRCC | 1 cut(s) | 1065 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2150, 2291 |
| AccBSI | CCGCTC | 2 cut(s) | 891, 1063 |
| AccII | CGCG | 2 cut(s) | 182, 1107 |
| AcoI | YGGCCR | 1 cut(s) | 1102 |
| AcuI | CTGAAG | 3 cut(s) | 968, 1608, 3249 |
| AfaI | GTAC | 7 cut(s) | 53, 179, 1067, 1556, 2406, 2720, 3550 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1557, 1600, 2036, 2092, 2093, 2105, 2150, 2291, 3359 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2102 |
| AjnI | CCWGG | 2 cut(s) | 2529, 3133 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2038, 2070 |
| Alw21I | GWGCWC | 6 cut(s) | 270, 1201, 1286, 1990, 2300, 2371 |
| Alw26I | GTCTC | 4 cut(s) | 1197, 2247, 2517, 2555 |
| Alw44I | GTGCAC | 2 cut(s) | 1986, 2367 |
| Ama87I | CYCGRG | 1 cut(s) | 1200 |
| AoxI | GGCC | 4 cut(s) | 1102, 2027, 2051, 2266 |
| ApaI | GGGCCC | 1 cut(s) | 2270 |
| ApaLI | GTGCAC | 2 cut(s) | 1986, 2367 |
| ApeKI | GCWGC | 3 cut(s) | 2122, 2801, 3019 |
| ArsI | GACNNNNNNTTYG | 5 cut(s) | 27, 1695, 1727, 2912, 2944 |
| AseI | ATTAAT | 1 cut(s) | 2175 |
| Asp718I | GGTACC | 1 cut(s) | 1065 |
| AspA2I | CCTAGG | 1 cut(s) | 1373 |
| AspLEI | GCGC | 2 cut(s) | 999, 2232 |
| AspS9I | GGNCC | 8 cut(s) | 1030, 1500, 2027, 2096, 2266, 2267, 2568, 3440 |
| AsuII | TTCGAA | 1 cut(s) | 323 |
| AvaI | CYCGRG | 1 cut(s) | 1200 |
| AvaII | GGWCC | 5 cut(s) | 1030, 1500, 2096, 2568, 3440 |
| AvrII | CCTAGG | 1 cut(s) | 1373 |
| BaeGI | GKGCMC | 3 cut(s) | 1990, 2270, 2371 |
| BamHI | GGATCC | 1 cut(s) | 2380 |
| BanI | GGYRCC | 1 cut(s) | 1065 |
| BanII | GRGCYC | 2 cut(s) | 1201, 2270 |
| BauI | CACGAG | 2 cut(s) | 2607, 3140 |
| BbsI | GAAGAC | 4 cut(s) | 726, 831, 1968, 3255 |
| Bbv12I | GWGCWC | 6 cut(s) | 270, 1201, 1286, 1990, 2300, 2371 |
| BbvI | GCAGC | 3 cut(s) | 2109, 2788, 3031 |
| BceAI | ACGGC | 2 cut(s) | 587, 3382 |
| BciT130I | CCWGG | 2 cut(s) | 2531, 3135 |
| BciVI | GTATCC | 2 cut(s) | 2737, 3522 |
| BcoDI | GTCTC | 4 cut(s) | 1197, 2247, 2517, 2555 |
| BfaI | CTAG | 9 cut(s) | 707, 747, 1374, 1983, 2237, 2385, 3023, 3201, 3281 |
| BfmI | CTRYAG | 1 cut(s) | 2574 |
| BfuAI | ACCTGC | 2 cut(s) | 2488, 3361 |
| BfuI | GTATCC | 2 cut(s) | 2737, 3522 |
| BglII | AGATCT | 3 cut(s) | 1319, 1442, 1661 |
| BisI | GCNGC | 7 cut(s) | 206, 556, 559, 1105, 2123, 2802, 3020 |
| BlnI | CCTAGG | 1 cut(s) | 1373 |
| BlpI | GCTNAGC | 1 cut(s) | 2391 |
| BlsI | GCNGC | 7 cut(s) | 207, 557, 560, 1106, 2124, 2803, 3021 |
| BmcAI | AGTACT | 1 cut(s) | 53 |
| Bme1390I | CCNGG | 2 cut(s) | 2531, 3135 |
| Bme18I | GGWCC | 5 cut(s) | 1030, 1500, 2096, 2568, 3440 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2102 |
| BmeT110I | CYCGRG | 1 cut(s) | 1200 |
| BmgT120I | GGNCC | 8 cut(s) | 1030, 1500, 2027, 2096, 2266, 2267, 2568, 3440 |
| BmiI | GGNNCC | 9 cut(s) | 1031, 1067, 1549, 2097, 2268, 2305, 2382, 3441, 3463 |
| BmrFI | CCNGG | 2 cut(s) | 2531, 3135 |
| BmrI | ACTGGG | 1 cut(s) | 1150 |
| BmuI | ACTGGG | 1 cut(s) | 1150 |
| BpiI | GAAGAC | 4 cut(s) | 726, 831, 1968, 3255 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1306, 1338 |
| BpmI | CTGGAG | 5 cut(s) | 1308, 1551, 1947, 2322, 3042 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2391 |
| Bpu14I | TTCGAA | 1 cut(s) | 323 |
| BsaI | GGTCTC | 2 cut(s) | 1197, 2247 |
| BsaJI | CCNNGG | 5 cut(s) | 1373, 2030, 2285, 2396, 3408 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1557, 1600, 2036, 2092, 2093, 2105, 2150, 2291, 3359 |
| BseBI | CCWGG | 2 cut(s) | 2531, 3135 |
| BseDI | CCNNGG | 5 cut(s) | 1373, 2030, 2285, 2396, 3408 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1557, 1600, 2036, 2092, 2093, 2105, 2150, 2291, 3359 |
| BseMII | CTCAG | 7 cut(s) | 912, 1460, 2258, 2382, 2550, 2703, 2739 |
| BseRI | GAGGAG | 6 cut(s) | 22, 120, 123, 200, 288, 2014 |
| BseSI | GKGCMC | 3 cut(s) | 1990, 2270, 2371 |
| BseXI | GCAGC | 3 cut(s) | 2109, 2788, 3031 |
| BseYI | CCCAGC | 1 cut(s) | 2492 |
| BsgI | GTGCAG | 1 cut(s) | 2486 |
| Bsh1236I | CGCG | 2 cut(s) | 182, 1107 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1111 |
| BshFI | GGCC | 4 cut(s) | 1104, 2029, 2053, 2268 |
| BshNI | GGYRCC | 1 cut(s) | 1065 |
| BsiEI | CGRYCG | 1 cut(s) | 1111 |
| BsiHKAI | GWGCWC | 6 cut(s) | 270, 1201, 1286, 1990, 2300, 2371 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1200 |
| BslFI | GGGAC | 9 cut(s) | 851, 1043, 1151, 1265, 1820, 2027, 2109, 2441, 2636 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1557, 1600, 2036, 2092, 2093, 2105, 2150, 2291, 3359 |
| BsmAI | GTCTC | 4 cut(s) | 1197, 2247, 2517, 2555 |
| BsmFI | GGGAC | 9 cut(s) | 851, 1043, 1151, 1265, 1820, 2027, 2109, 2441, 2636 |
| BsmI | GAATGC | 1 cut(s) | 3088 |
| BsnI | GGCC | 4 cut(s) | 1104, 2029, 2053, 2268 |
| Bso31I | GGTCTC | 2 cut(s) | 1197, 2247 |
| BsoBI | CYCGRG | 1 cut(s) | 1200 |
| Bsp119I | TTCGAA | 1 cut(s) | 323 |
| Bsp120I | GGGCCC | 1 cut(s) | 2266 |
| Bsp1286I | GDGCHC | 7 cut(s) | 270, 1201, 1286, 1990, 2270, 2300, 2371 |
| Bsp1407I | TGTACA | 1 cut(s) | 2718 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2391 |
| Bsp19I | CCATGG | 2 cut(s) | 2285, 2396 |
| BspANI | GGCC | 4 cut(s) | 1104, 2029, 2053, 2268 |
| BspCNI | CTCAG | 7 cut(s) | 913, 1459, 2257, 2383, 2551, 2704, 2740 |
| BspFNI | CGCG | 2 cut(s) | 182, 1107 |
| BspHI | TCATGA | 2 cut(s) | 1183, 2518 |
| BspLI | GGNNCC | 9 cut(s) | 1031, 1067, 1549, 2097, 2268, 2305, 2382, 3441, 3463 |
| BspMI | ACCTGC | 2 cut(s) | 2488, 3361 |
| BspQI | GCTCTTC | 1 cut(s) | 3213 |
| BspT104I | TTCGAA | 1 cut(s) | 323 |
| BspT107I | GGYRCC | 1 cut(s) | 1065 |
| BspTNI | GGTCTC | 2 cut(s) | 1197, 2247 |
| BsrBI | CCGCTC | 2 cut(s) | 891, 1063 |
| BsrGI | TGTACA | 1 cut(s) | 2718 |
| BssECI | CCNNGG | 5 cut(s) | 1373, 2030, 2285, 2396, 3408 |
| BssSI | CACGAG | 2 cut(s) | 2607, 3140 |
| BssT1I | CCWWGG | 4 cut(s) | 1373, 2030, 2285, 2396 |
| Bst2BI | CACGAG | 2 cut(s) | 2607, 3140 |
| Bst2UI | CCWGG | 2 cut(s) | 2531, 3135 |
| Bst6I | CTCTTC | 6 cut(s) | 125, 320, 329, 377, 965, 3213 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2702 |
| BstAUI | TGTACA | 1 cut(s) | 2718 |
| BstBI | TTCGAA | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 2 cut(s) | 773, 1197 |
| BstDSI | CCRYGG | 2 cut(s) | 2285, 2396 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2034 |
| BstFNI | CGCG | 2 cut(s) | 182, 1107 |
| BstHHI | GCGC | 2 cut(s) | 999, 2232 |
| BstMAI | GTCTC | 4 cut(s) | 1197, 2247, 2517, 2555 |
| BstMCI | CGRYCG | 1 cut(s) | 1111 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 768, 2702, 2807, 3047, 3428, 3479 |
| BstNI | CCWGG | 2 cut(s) | 2531, 3135 |
| BstNSI | RCATGY | 2 cut(s) | 2281, 2929 |
| BstSCI | CCNGG | 2 cut(s) | 2529, 3133 |
| BstSFI | CTRYAG | 1 cut(s) | 2574 |
| BstSLI | GKGCMC | 3 cut(s) | 1990, 2270, 2371 |
| BstUI | CGCG | 2 cut(s) | 182, 1107 |
| BstV1I | GCAGC | 3 cut(s) | 2109, 2788, 3031 |
| BstV2I | GAAGAC | 4 cut(s) | 726, 831, 1968, 3255 |
| BstX2I | RGATCY | 8 cut(s) | 974, 1319, 1442, 1661, 2380, 2533, 2773, 2890 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1582 |
| BstYI | RGATCY | 8 cut(s) | 974, 1319, 1442, 1661, 2380, 2533, 2773, 2890 |
| BsuI | GTATCC | 2 cut(s) | 2737, 3522 |
| BsuRI | GGCC | 4 cut(s) | 1104, 2029, 2053, 2268 |
| BtgI | CCRYGG | 2 cut(s) | 2285, 2396 |
| BtsI | GCAGTG | 1 cut(s) | 1752 |
| BtsIMutI | CAGTG | 7 cut(s) | 733, 1752, 1962, 2298, 2469, 2732, 3066 |
| BveI | ACCTGC | 2 cut(s) | 2488, 3361 |
| Cac8I | GCNNGC | 2 cut(s) | 773, 1197 |
| CciI | TCATGA | 2 cut(s) | 1183, 2518 |
| CfoI | GCGC | 2 cut(s) | 999, 2232 |
| Cfr13I | GGNCC | 8 cut(s) | 1030, 1500, 2027, 2096, 2266, 2267, 2568, 3440 |
| Csp6I | GTAC | 7 cut(s) | 52, 178, 1066, 1555, 2405, 2719, 3549 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1855, 1890, 3225, 3260 |
| CviQI | GTAC | 7 cut(s) | 52, 178, 1066, 1555, 2405, 2719, 3549 |
| DraI | TTTAAA | 2 cut(s) | 609, 2862 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2102 |
| EaeI | YGGCCR | 1 cut(s) | 1102 |
| Eam1104I | CTCTTC | 6 cut(s) | 125, 320, 329, 377, 965, 3213 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2102 |
| EarI | CTCTTC | 6 cut(s) | 125, 320, 329, 377, 965, 3213 |
| EciI | GGCGGA | 3 cut(s) | 223, 2130, 2351 |
| Ecl136II | GAGCTC | 1 cut(s) | 1199 |
| Eco130I | CCWWGG | 4 cut(s) | 1373, 2030, 2285, 2396 |
| Eco24I | GRGCYC | 2 cut(s) | 1201, 2270 |
| Eco31I | GGTCTC | 2 cut(s) | 1197, 2247 |
| Eco47I | GGWCC | 5 cut(s) | 1030, 1500, 2096, 2568, 3440 |
| Eco53kI | GAGCTC | 1 cut(s) | 1199 |
| Eco57I | CTGAAG | 3 cut(s) | 968, 1608, 3249 |
| Eco88I | CYCGRG | 1 cut(s) | 1200 |
| EcoICRI | GAGCTC | 1 cut(s) | 1199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2034 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2027, 2096, 2267 |
| EcoRII | CCWGG | 2 cut(s) | 2529, 3133 |
| EcoT14I | CCWWGG | 4 cut(s) | 1373, 2030, 2285, 2396 |
| EcoT22I | ATGCAT | 2 cut(s) | 2283, 2787 |
| EcoT38I | GRGCYC | 2 cut(s) | 1201, 2270 |
| ErhI | CCWWGG | 4 cut(s) | 1373, 2030, 2285, 2396 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1651, 1683, 1741, 1773, 3315, 3347 |
| FaqI | GGGAC | 9 cut(s) | 851, 1043, 1151, 1265, 1820, 2027, 2109, 2441, 2636 |
| FauI | CCCGC | 1 cut(s) | 1855 |
| Fnu4HI | GCNGC | 7 cut(s) | 206, 556, 559, 1105, 2123, 2802, 3020 |
| FriOI | GRGCYC | 2 cut(s) | 1201, 2270 |
| Fsp4HI | GCNGC | 7 cut(s) | 206, 556, 559, 1105, 2123, 2802, 3020 |
| FspBI | CTAG | 9 cut(s) | 707, 747, 1374, 1983, 2237, 2385, 3023, 3201, 3281 |
| GlaI | GCGC | 2 cut(s) | 998, 2231 |
| GluI | GCNGC | 7 cut(s) | 206, 556, 559, 1105, 2123, 2802, 3020 |
| GsaI | CCCAGC | 1 cut(s) | 2496 |
| GsuI | CTGGAG | 5 cut(s) | 1308, 1551, 1947, 2322, 3042 |
| HaeIII | GGCC | 4 cut(s) | 1104, 2029, 2053, 2268 |
| HhaI | GCGC | 2 cut(s) | 999, 2232 |
| Hin6I | GCGC | 2 cut(s) | 997, 2230 |
| HinP1I | GCGC | 2 cut(s) | 997, 2230 |
| HincII | GTYRAC | 1 cut(s) | 1432 |
| HindII | GTYRAC | 1 cut(s) | 1432 |
| HindIII | AAGCTT | 2 cut(s) | 980, 2681 |
| HpaI | GTTAAC | 1 cut(s) | 1432 |
| Hpy166II | GTNNAC | 9 cut(s) | 1079, 1085, 1432, 1978, 1988, 2369, 2571, 3373, 3551 |
| Hpy8I | GTNNAC | 9 cut(s) | 1079, 1085, 1432, 1978, 1988, 2369, 2571, 3373, 3551 |
| Hpy99I | CGWCG | 3 cut(s) | 202, 566, 1970 |
| HpyCH4IV | ACGT | 2 cut(s) | 1081, 1990 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 768, 2702, 2807, 3047, 3428, 3479 |
| HpySE526I | ACGT | 2 cut(s) | 1081, 1990 |
| HspAI | GCGC | 2 cut(s) | 997, 2230 |
| KpnI | GGTACC | 1 cut(s) | 1069 |
| KspAI | GTTAAC | 1 cut(s) | 1432 |
| LguI | GCTCTTC | 1 cut(s) | 3213 |
| Lsp1109I | GCAGC | 3 cut(s) | 2109, 2788, 3031 |
| MaeI | CTAG | 9 cut(s) | 707, 747, 1374, 1983, 2237, 2385, 3023, 3201, 3281 |
| MaeII | ACGT | 2 cut(s) | 1081, 1990 |
| MaeIII | GTNAC | 8 cut(s) | 1034, 1166, 1263, 2222, 2616, 3091, 3137, 3309 |
| MbiI | CCGCTC | 2 cut(s) | 891, 1063 |
| MfeI | CAATTG | 1 cut(s) | 2640 |
| MflI | RGATCY | 8 cut(s) | 974, 1319, 1442, 1661, 2380, 2533, 2773, 2890 |
| MhlI | GDGCHC | 7 cut(s) | 270, 1201, 1286, 1990, 2270, 2300, 2371 |
| MluCI | AATT | 8 cut(s) | 1885, 1915, 2014, 2199, 2640, 3231, 3391, 3516 |
| MlyI | GAGTC | 8 cut(s) | 170, 457, 1031, 1430, 1810, 2464, 2603, 3512 |
| MmeI | TCCRAC | 5 cut(s) | 606, 1404, 1724, 3159, 3506 |
| Mph1103I | ATGCAT | 2 cut(s) | 2283, 2787 |
| MseI | TTAA | 8 cut(s) | 608, 908, 935, 1431, 2175, 2795, 2861, 3521 |
| MslI | CAYNNNNRTG | 9 cut(s) | 852, 1014, 1050, 1074, 1188, 1272, 2151, 2374, 2412 |
| MspA1I | CMGCKG | 2 cut(s) | 1850, 2558 |
| MspR9I | CCNGG | 2 cut(s) | 2531, 3135 |
| MunI | CAATTG | 1 cut(s) | 2640 |
| Mva1269I | GAATGC | 1 cut(s) | 3088 |
| MvaI | CCWGG | 2 cut(s) | 2531, 3135 |
| MvnI | CGCG | 2 cut(s) | 182, 1107 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 768, 2702, 2807, 3047, 3428, 3479 |
| NcoI | CCATGG | 2 cut(s) | 2285, 2396 |
| NlaIV | GGNNCC | 9 cut(s) | 1031, 1067, 1549, 2097, 2268, 2305, 2382, 3441, 3463 |
| NmeAIII | GCCGAG | 1 cut(s) | 3433 |
| NmuCI | GTSAC | 6 cut(s) | 1034, 1166, 1263, 2222, 2616, 3137 |
| NsiI | ATGCAT | 2 cut(s) | 2283, 2787 |
| NspI | RCATGY | 2 cut(s) | 2281, 2929 |
| NspV | TTCGAA | 1 cut(s) | 323 |
| PaeR7I | CTCGAG | 1 cut(s) | 1200 |
| PagI | TCATGA | 2 cut(s) | 1183, 2518 |
| PciSI | GCTCTTC | 1 cut(s) | 3213 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 11, 320 |
| PctI | GAATGC | 1 cut(s) | 3088 |
| PflFI | GACNNNGTC | 2 cut(s) | 1800, 2566 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2150, 2291 |
| PkrI | GCNGC | 7 cut(s) | 207, 557, 560, 1106, 2124, 2803, 3021 |
| PleI | GAGTC | 8 cut(s) | 169, 456, 1031, 1429, 1809, 2464, 2602, 3511 |
| PpsI | GAGTC | 8 cut(s) | 169, 456, 1031, 1429, 1809, 2464, 2602, 3511 |
| PpuMI | RGGWCCY | 1 cut(s) | 2096 |
| PshBI | ATTAAT | 1 cut(s) | 2175 |
| Psp124BI | GAGCTC | 1 cut(s) | 1201 |
| Psp5II | RGGWCCY | 1 cut(s) | 2096 |
| Psp6I | CCWGG | 2 cut(s) | 2529, 3133 |
| PspFI | CCCAGC | 1 cut(s) | 2492 |
| PspGI | CCWGG | 2 cut(s) | 2529, 3133 |
| PspN4I | GGNNCC | 9 cut(s) | 1031, 1067, 1549, 2097, 2268, 2305, 2382, 3441, 3463 |
| PspOMI | GGGCCC | 1 cut(s) | 2266 |
| PspPI | GGNCC | 8 cut(s) | 1030, 1500, 2027, 2096, 2266, 2267, 2568, 3440 |
| PspPPI | RGGWCCY | 1 cut(s) | 2096 |
| PsuI | RGATCY | 8 cut(s) | 974, 1319, 1442, 1661, 2380, 2533, 2773, 2890 |
| PsyI | GACNNNGTC | 2 cut(s) | 1800, 2566 |
| PvuII | CAGCTG | 1 cut(s) | 2558 |
| RsaI | GTAC | 7 cut(s) | 53, 179, 1067, 1556, 2406, 2720, 3550 |
| RsaNI | GTAC | 7 cut(s) | 52, 178, 1066, 1555, 2405, 2719, 3549 |
| RseI | CAYNNNNRTG | 9 cut(s) | 852, 1014, 1050, 1074, 1188, 1272, 2151, 2374, 2412 |
| SacI | GAGCTC | 1 cut(s) | 1201 |
| SapI | GCTCTTC | 1 cut(s) | 3213 |
| SaqAI | TTAA | 8 cut(s) | 608, 908, 935, 1431, 2175, 2795, 2861, 3521 |
| SatI | GCNGC | 7 cut(s) | 206, 556, 559, 1105, 2123, 2802, 3020 |
| Sau96I | GGNCC | 8 cut(s) | 1030, 1500, 2027, 2096, 2266, 2267, 2568, 3440 |
| ScaI | AGTACT | 1 cut(s) | 53 |
| SchI | GAGTC | 8 cut(s) | 170, 457, 1031, 1430, 1810, 2464, 2603, 3512 |
| ScrFI | CCNGG | 2 cut(s) | 2531, 3135 |
| SduI | GDGCHC | 7 cut(s) | 270, 1201, 1286, 1990, 2270, 2300, 2371 |
| SfcI | CTRYAG | 1 cut(s) | 2574 |
| Sfr274I | CTCGAG | 1 cut(s) | 1200 |
| SfuI | TTCGAA | 1 cut(s) | 323 |
| SinI | GGWCC | 5 cut(s) | 1030, 1500, 2096, 2568, 3440 |
| SlaI | CTCGAG | 1 cut(s) | 1200 |
| SmiI | ATTTAAAT | 1 cut(s) | 609 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 852, 1014, 1050, 1074, 1188, 1272, 2151, 2374, 2412 |
| SmlI | CTYRAG | 1 cut(s) | 1200 |
| SmoI | CTYRAG | 1 cut(s) | 1200 |
| Sse9I | AATT | 8 cut(s) | 1885, 1915, 2014, 2199, 2640, 3231, 3391, 3516 |
| SspMI | CTAG | 9 cut(s) | 707, 747, 1374, 1983, 2237, 2385, 3023, 3201, 3281 |
| SstI | GAGCTC | 1 cut(s) | 1201 |
| StyD4I | CCNGG | 2 cut(s) | 2529, 3133 |
| StyI | CCWWGG | 4 cut(s) | 1373, 2030, 2285, 2396 |
| SwaI | ATTTAAAT | 1 cut(s) | 609 |
| TaiI | ACGT | 2 cut(s) | 1084, 1993 |
| TaqII | GACCGA | 2 cut(s) | 1185, 1813 |
| TasI | AATT | 8 cut(s) | 1885, 1915, 2014, 2199, 2640, 3231, 3391, 3516 |
| TatI | WGTACW | 5 cut(s) | 51, 1554, 2404, 2718, 3548 |
| TauI | GCSGC | 4 cut(s) | 208, 558, 561, 1107 |
| Tru1I | TTAA | 8 cut(s) | 608, 908, 935, 1431, 2175, 2795, 2861, 3521 |
| Tru9I | TTAA | 8 cut(s) | 608, 908, 935, 1431, 2175, 2795, 2861, 3521 |
| TscAI | CASTG | 7 cut(s) | 733, 1759, 1962, 2305, 2469, 2732, 3066 |
| TseFI | GTSAC | 6 cut(s) | 1034, 1166, 1263, 2222, 2616, 3137 |
| TseI | GCWGC | 3 cut(s) | 2122, 2801, 3019 |
| Tsp45I | GTSAC | 6 cut(s) | 1034, 1166, 1263, 2222, 2616, 3137 |
| TspGWI | ACGGA | 1 cut(s) | 631 |
| TspRI | CASTG | 7 cut(s) | 733, 1759, 1962, 2305, 2469, 2732, 3066 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1800, 2566 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2150, 2291 |
| VneI | GTGCAC | 2 cut(s) | 1986, 2367 |
| VpaK11BI | GGWCC | 5 cut(s) | 1030, 1500, 2096, 2568, 3440 |
| VspI | ATTAAT | 1 cut(s) | 2175 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2034 |
| XbaI | TCTAGA | 1 cut(s) | 706 |
| XceI | RCATGY | 2 cut(s) | 2281, 2929 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3181 |
| XhoI | CTCGAG | 1 cut(s) | 1200 |
| XmaJI | CCTAGG | 1 cut(s) | 1373 |
| XspI | CTAG | 9 cut(s) | 707, 747, 1374, 1983, 2237, 2385, 3023, 3201, 3281 |
| ZrmI | AGTACT | 1 cut(s) | 53 |
| Zsp2I | ATGCAT | 2 cut(s) | 2283, 2787 |