Rorug01G0425900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007346
Physical Location & Seq
Forward (+)
52647674 .. 52648264
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0425900.1

Sequence Viewer

Length: 591 bp
ATGTCCATCTTCTTCTCTACTTTCGGCTCCTTTGCCGCAACAGTGATCTTTGGCTGTTCCCTGGCGGAGCAAATCATCCCGAAGCAGGTGAGAAAATACATGTTCTCACTCCTCATGTCGTCCTTGTTCTCTTATGAGCGAACTTTTGTGGTTGAAGAGTACACTGAAGTCGGAGAACGCAACCAAATATACGACTACGTTGAGCTCTACCTCCGAGCTAAAATTGGCGTCCGCATTAGCAAAACCCCTAAGCAGAAGACCACCGCCTTCGCCCTCGACGACGATCAAGAAATCACCGACACATTCAAAAACTTCAGTGTCAAGTGGCGTTATATGTGCATTGAACCAATGGACCGTCTCTCCGATGAAAAGCGTTTATACAAACTGATTTTCCACAAGAAGCACAGAGGTTATGTGATAGACTCCTACTTGGCCAATGTGTATGCTCAGGCTAAAGAAATCAAGAAAGGGGAAAAGGTCCTCAAGATTTACACTCGCAGTCAGCAGGGGCGTAGTCGCTCACAGGGCTACTTGGGCTATAGCCCAAGGGAGAATTTCGCCCAAAATGCGTCAAGTATGGGTATAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.87

Weight (kDa)

9.43

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 26 - 113 4.2e-17 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 4 cut(s) 36, 65, 232, 264
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 2 cut(s) 186, 298
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 155, 307, 344
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 205, 218
AluI AGCT 2 cut(s) 205, 218
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 362
AoxI GGCC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 352, 478
AsuHPI GGTGA 2 cut(s) 100, 286
AvaII GGWCC 2 cut(s) 352, 478
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 352, 478
BmgT120I GGNCC 2 cut(s) 352, 478
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 263
Bpu10I CCTNAGC 2 cut(s) 249, 447
BpuEI CTTGAG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 60, 545
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 60, 545
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 45, 283
BspACI CCGC 4 cut(s) 36, 65, 232, 264
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 60, 545
BssMI GATC 2 cut(s) 45, 283
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 43, 356
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 249, 447
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 2 cut(s) 48, 286
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 45, 283
BstMWI GCNNNNNNNGC 3 cut(s) 525, 534, 566
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 538
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 48, 162, 322
BveI ACCTGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 352, 478
CseI GACGC 2 cut(s) 217, 558
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 100, 115
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 249, 447
DpnI GATC 2 cut(s) 47, 285
DpnII GATC 2 cut(s) 45, 283
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 352, 478
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 186, 298
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 545
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 2 cut(s) 103, 118
FatI CATG 2 cut(s) 99, 114
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 434
HgaI GACGC 2 cut(s) 217, 558
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 103, 118
HinfI GANTC 1 cut(s) 422
HphI GGTGA 2 cut(s) 100, 286
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 3 cut(s) 173, 215, 364
Hpy188III TCNNGA 4 cut(s) 79, 287, 463, 484
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 43, 356
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 3 cut(s) 525, 534, 566
HpyF3I CTNAG 2 cut(s) 249, 447
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 103, 118
Kzo9I GATC 2 cut(s) 45, 283
LmnI GCTCC 2 cut(s) 32, 67
LpnPI CCDG 6 cut(s) 47, 71, 74, 434, 491, 509
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 47, 285
MboI GATC 2 cut(s) 45, 283
MboII GAAGA 3 cut(s) 4, 167, 268
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 2 cut(s) 222, 553
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 5 cut(s) 122, 221, 284, 401, 491
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 525, 534, 566
NdeII GATC 2 cut(s) 45, 283
NlaIII CATG 2 cut(s) 103, 118
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 76
PciI ACATGT 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PpuMI RGGWCCY 1 cut(s) 478
PscI ACATGT 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 352, 478
PspPPI RGGWCCY 1 cut(s) 478
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 45, 283
Sau96I GGNCC 2 cut(s) 352, 478
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 90, 201, 207, 213, 220, 412, 480
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 2 cut(s) 352, 478
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 2 cut(s) 222, 553
SsiI CCGC 4 cut(s) 36, 65, 232, 264
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 2 cut(s) 43, 356
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 276
TasI AATT 2 cut(s) 222, 553
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 38
TscAI CASTG 3 cut(s) 48, 169, 322
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 3 cut(s) 48, 169, 322
VpaK11BI GGWCC 2 cut(s) 352, 478
XapI RAATTY 1 cut(s) 553
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.