pycom08g01570

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0008366
Physical Location & Seq
Reverse (-)
1190170 .. 1192362
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1614 bp
ATGGGGAAGAAGAAATTCATCGACAAGAAAAAATCGGCGACCTTCCAATTAGTCGCCCGCGACTCGTCCGATCCCAACTACGATGACTCACCCGGCAACGACCGAGTCTTTGTACGAGTCGACAACAGCAGCTACTCCGTCGACAGCTTGTTCCCGGAGGATAACCCTGACCACGGCTCCGGTGCCAACGGATACAACGATGATCCTGATTCGATATACGCCGATGCGCCGGAGGATGGCGGCGGCGGGGACTATGGCCATGGTTACGGGAGCTCGGCGGTGTCATCGGCAGCTCAGCCTTTGCCTGACAACGTAAGGAAGGAGATTCTGGAGCTAGGGTTTCCAGACGACGGTTACAATTACTTGCTGCATATGAGGGAGATCAGGAATACTGGCGGCGGTTCTGCGTTTTATCAGAATTCAAAGGCTAAGCTGGGTGAGCTCCCGCGCGATGAAAAGGCATATGATGCTTCAAGATTGCGCATTTCGGAAACCGAAGCTCCGAACGAGAAGGTTATTTACAGTGTGGCTTCTAAGACGGTTAATGTAAGGGTTCAGAAAGTGGTTGATCCAGAAGTGTCTAAATTGCTTGATGATAGTGATGTTTCGCGGTTTGGTTCTGATGTTGAGGACTTGGAAGAAGATTTCGTGGTTCAGGCTAACCAACCCGAAGAAGAGGAAGAAGAGGAGGAGGAGGAGGATGATGGGGTTATAGATAATATGGCAAGTTTTGTCGAACAACCTGAGAACAAAAATGTGAGCAATGAAGCAAATGGAGCACGATCAAATAGCGTGGCTGAAGCAAAGGATCAATCTGTGGTTGAAAAACCACGAGTTCATCGCCTTTTGGATGAGCAATTTGAATTGCTTGTAGGTCAGGAGTACGGCAGTTATGACAATGACGATGATGATGATTATGGTTATATACCTGAAGAAGATGAGTCCCTTGCAGAGAAGCTCAAACATGCCACCCTTAATGAGCATGTGATGGATGACTTAGAGCTGGATGGAAATTACAAGGCTCCTGCAGATTTGTTGCGGGATAACGAGACAGTAAAAACGAAAGAGCTAGTGGACTCTGCTAATGACCTTATTCGGCGCTGTGCGGAATATGCAGAGAAATATGAGAATGAAGATCAAGATGGAGACGTGGTCATTGTAGAAGAGTCTAGCGATGAATCAGAAGTGTGGGACTGTGAGACCATTGTTACTACATATTCAAATCTTGATAACCACCCTGGAAAAATTGAAGCTCCAGGAGCAACTAGAAGGAAGAAGCTTTCTGAAACGGTTTCTGGAGCCTTGGATTCCACTGATCGTGTGATAACTCTTCGAGGAAAACAGAAGTTGCCCGTGGACTTCCTGCCTCATGGTAAAAAAGCTACTTCTGAGATGGTGAAAGACACGGGTGCCTTGAAAAATCAGCCGCTGAAAAGGAAGCAGCATGGTCAGGAGTCAAAGGAGGAGAAGAAAGAGCGAAAGGCTGCTGTTAAGGAGGAAAGGCGTGAAGCACGCCGCACTAAAAAAGAAATAAAGGAACTCTACAAGGGTGAAGCACAGCATGCCCAGAGAGTAGTTGCTATTTCGGGCCCTTCTTCTATTCATCTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

538

Amino Acids

59.94

Weight (kDa)

4.62

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTV PF04180 8 - 261 1.2e-08 Low temperature viability protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 482
AccB1I GGYRCC 2 cut(s) 182, 1409
AccI GTMKAC 2 cut(s) 120, 141
AccII CGCG 4 cut(s) 60, 448, 450, 610
AclWI GGATC 4 cut(s) 65, 197, 563, 816
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 2 cut(s) 14, 418
AcuI CTGAAG 2 cut(s) 819, 951
AfaI GTAC 2 cut(s) 114, 884
AfiI CCNNNNNNNGG 3 cut(s) 173, 236, 350
AgsI TTSAA 7 cut(s) 423, 474, 824, 863, 1221, 1250, 1417
AjiI CACGTC 1 cut(s) 1150
AjnI CCWGG 2 cut(s) 1237, 1255
Alw21I GWGCWC 3 cut(s) 275, 444, 781
Alw26I GTCTC 3 cut(s) 1043, 1140, 1193
AlwI GGATC 4 cut(s) 65, 197, 563, 816
AlwNI CAGNNNCTG 1 cut(s) 1429
AoxI GGCC 2 cut(s) 256, 1588
ApaI GGGCCC 1 cut(s) 1592
ApeKI GCWGC 5 cut(s) 129, 290, 367, 1441, 1484
ApoI RAATTY 2 cut(s) 14, 418
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 4 cut(s) 229, 450, 483, 1101
AspS9I GGNCC 2 cut(s) 1588, 1589
AsuC2I CCSGG 2 cut(s) 93, 155
AsuHPI GGTGA 4 cut(s) 81, 449, 1408, 1562
BaeGI GKGCMC 1 cut(s) 1592
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 2 cut(s) 182, 1409
BanII GRGCYC 3 cut(s) 275, 444, 1592
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BauI CACGAG 1 cut(s) 831
Bbv12I GWGCWC 3 cut(s) 275, 444, 781
BbvI GCAGC 5 cut(s) 141, 302, 354, 1453, 1471
BccI CCATC 6 cut(s) 230, 698, 982, 1001, 1136, 1387
BceAI ACGGC 2 cut(s) 190, 901
BciT130I CCWGG 2 cut(s) 1239, 1257
BciVI GTATCC 1 cut(s) 185
BcnI CCSGG 2 cut(s) 93, 155
BcoDI GTCTC 3 cut(s) 1043, 1140, 1193
BfaI CTAG 4 cut(s) 335, 1070, 1170, 1266
BfmI CTRYAG 1 cut(s) 1026
BfoI RGCGCY 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 185
BlpI GCTNAGC 2 cut(s) 294, 429
Bme1390I CCNGG 4 cut(s) 93, 155, 1239, 1257
BmgBI CACGTC 1 cut(s) 1150
BmgT120I GGNCC 2 cut(s) 1588, 1589
BmiI GGNNCC 6 cut(s) 178, 184, 1023, 1300, 1411, 1590
BmrFI CCNGG 4 cut(s) 93, 155, 1239, 1257
BmsI GCATC 2 cut(s) 214, 457
BpmI CTGGAG 3 cut(s) 350, 1239, 1317
Bpu1102I GCTNAGC 2 cut(s) 294, 429
BpuMI CCSGG 2 cut(s) 93, 155
BsaI GGTCTC 1 cut(s) 1193
BsaJI CCNNGG 5 cut(s) 172, 259, 1237, 1302, 1353
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 8 cut(s) 161, 191, 323, 353, 484, 514, 1137, 1167
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 236, 350
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 769
BseBI CCWGG 2 cut(s) 1239, 1257
BseDI CCNNGG 5 cut(s) 172, 259, 1237, 1302, 1353
BseGI GGATG 5 cut(s) 241, 706, 856, 997, 1012
BseLI CCNNNNNNNGG 3 cut(s) 173, 236, 350
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 3 cut(s) 308, 735, 1380
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 5 cut(s) 701, 704, 707, 710, 1478
BseSI GKGCMC 1 cut(s) 1592
BseXI GCAGC 5 cut(s) 141, 302, 354, 1453, 1471
BseYI CCCAGC 1 cut(s) 433
Bsh1236I CGCG 4 cut(s) 60, 448, 450, 610
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 258, 1590
BshNI GGYRCC 2 cut(s) 182, 1409
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 3 cut(s) 275, 444, 781
BsiSI CCGG 4 cut(s) 93, 155, 180, 230
BslFI GGGAC 3 cut(s) 263, 928, 1205
BslI CCNNNNNNNGG 3 cut(s) 173, 236, 350
BsmAI GTCTC 3 cut(s) 1043, 1140, 1193
BsmBI CGTCTC 1 cut(s) 1140
BsmFI GGGAC 3 cut(s) 263, 928, 1205
BsnI GGCC 2 cut(s) 258, 1590
Bso31I GGTCTC 1 cut(s) 1193
Bsp120I GGGCCC 1 cut(s) 1588
Bsp1286I GDGCHC 4 cut(s) 275, 444, 781, 1592
Bsp143I GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
Bsp1720I GCTNAGC 2 cut(s) 294, 429
Bsp19I CCATGG 1 cut(s) 259
BspANI GGCC 2 cut(s) 258, 1590
BspCNI CTCAG 3 cut(s) 307, 736, 1381
BspFNI CGCG 4 cut(s) 60, 448, 450, 610
BspLI GGNNCC 6 cut(s) 178, 184, 1023, 1300, 1411, 1590
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 4 cut(s) 65, 197, 563, 816
BspT107I GGYRCC 2 cut(s) 182, 1409
BspTNI GGTCTC 1 cut(s) 1193
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 5 cut(s) 172, 259, 1237, 1302, 1353
BssMI GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 2 cut(s) 259, 1302
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 1239, 1257
Bst4CI ACNGT 6 cut(s) 353, 524, 541, 1054, 1196, 1291
Bst6I CTCTTC 4 cut(s) 669, 678, 1158, 1335
BstAPI GCANNNNNTGC 2 cut(s) 467, 1562
BstC8I GCNNGC 3 cut(s) 58, 1513, 1563
BstDEI CTNAG 6 cut(s) 294, 429, 534, 744, 997, 1389
BstDSI CCRYGG 3 cut(s) 172, 259, 1353
BstF5I GGATG 5 cut(s) 241, 706, 856, 997, 1012
BstFNI CGCG 4 cut(s) 60, 448, 450, 610
BstH2I RGCGCY 1 cut(s) 1102
BstHHI GCGC 4 cut(s) 229, 450, 483, 1101
BstKTI GATC 8 cut(s) 73, 205, 384, 571, 785, 811, 1138, 1318
BstMAI GTCTC 3 cut(s) 1043, 1140, 1193
BstMBI GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 6 cut(s) 439, 467, 776, 1112, 1259, 1562
BstNI CCWGG 2 cut(s) 1239, 1257
BstNSI RCATGY 3 cut(s) 968, 986, 1565
BstSCI CCNGG 4 cut(s) 91, 153, 1237, 1255
BstSFI CTRYAG 1 cut(s) 1026
BstSLI GKGCMC 1 cut(s) 1592
BstUI CGCG 4 cut(s) 60, 448, 450, 610
BstV1I GCAGC 5 cut(s) 141, 302, 354, 1453, 1471
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 258, 1590
BtgI CCRYGG 3 cut(s) 172, 259, 1353
BtgZI GCGATG 3 cut(s) 465, 824, 1188
BtrI CACGTC 1 cut(s) 1150
BtsCI GGATG 5 cut(s) 241, 706, 856, 997, 1012
BtsIMutI CAGTG 2 cut(s) 529, 1311
Cac8I GCNNGC 3 cut(s) 58, 1513, 1563
CaiI CAGNNNCTG 1 cut(s) 1429
CfoI GCGC 4 cut(s) 229, 450, 483, 1101
Cfr13I GGNCC 2 cut(s) 1588, 1589
Csp6I GTAC 2 cut(s) 113, 883
CspCI CAANNNNNGTGG 2 cut(s) 774, 809
CviAII CATG 6 cut(s) 260, 965, 983, 1370, 1445, 1562
CviQI GTAC 2 cut(s) 113, 883
DdeI CTNAG 6 cut(s) 294, 429, 534, 744, 997, 1389
DpnI GATC 8 cut(s) 72, 204, 383, 570, 784, 810, 1137, 1317
DpnII GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 4 cut(s) 669, 678, 1158, 1335
EarI CTCTTC 4 cut(s) 669, 678, 1158, 1335
Ecl136II GAGCTC 2 cut(s) 273, 442
Eco130I CCWWGG 2 cut(s) 259, 1302
Eco24I GRGCYC 3 cut(s) 275, 444, 1592
Eco31I GGTCTC 1 cut(s) 1193
Eco53kI GAGCTC 2 cut(s) 273, 442
Eco57I CTGAAG 2 cut(s) 819, 951
EcoICRI GAGCTC 2 cut(s) 273, 442
EcoO109I RGGNCCY 1 cut(s) 1589
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 1237, 1255
EcoT14I CCWWGG 2 cut(s) 259, 1302
EcoT38I GRGCYC 3 cut(s) 275, 444, 1592
ErhI CCWWGG 2 cut(s) 259, 1302
Esp3I CGTCTC 1 cut(s) 1140
FaeI CATG 6 cut(s) 263, 968, 986, 1373, 1448, 1565
FaqI GGGAC 3 cut(s) 263, 928, 1205
FatI CATG 6 cut(s) 259, 964, 982, 1369, 1444, 1561
FauI CCCGC 4 cut(s) 65, 239, 453, 1032
FauNDI CATATG 2 cut(s) 372, 463
FblI GTMKAC 2 cut(s) 120, 141
FokI GGATG 5 cut(s) 248, 713, 863, 1004, 1019
FriOI GRGCYC 3 cut(s) 275, 444, 1592
FspBI CTAG 4 cut(s) 335, 1070, 1170, 1266
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 4 cut(s) 228, 449, 482, 1100
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 3 cut(s) 350, 1239, 1317
HaeII RGCGCY 1 cut(s) 1102
HaeIII GGCC 2 cut(s) 258, 1590
HapII CCGG 4 cut(s) 93, 155, 180, 230
HhaI GCGC 4 cut(s) 229, 450, 483, 1101
Hin1II CATG 6 cut(s) 263, 968, 986, 1373, 1448, 1565
Hin6I GCGC 4 cut(s) 227, 448, 481, 1099
HinP1I GCGC 4 cut(s) 227, 448, 481, 1099
HincII GTYRAC 2 cut(s) 121, 142
HindII GTYRAC 2 cut(s) 121, 142
HindIII AAGCTT 1 cut(s) 1277
HpaII CCGG 4 cut(s) 93, 155, 180, 230
HphI GGTGA 4 cut(s) 81, 449, 1408, 1562
Hpy166II GTNNAC 4 cut(s) 121, 142, 1075, 1357
Hpy188I TCNGA 9 cut(s) 70, 417, 490, 504, 558, 622, 1183, 1285, 1390
Hpy8I GTNNAC 4 cut(s) 121, 142, 1075, 1357
Hpy99I CGWCG 2 cut(s) 143, 353
HpyAV CCTTC 5 cut(s) 52, 313, 505, 1263, 1602
HpyCH4III ACNGT 6 cut(s) 353, 524, 541, 1054, 1196, 1291
HpyCH4IV ACGT 2 cut(s) 312, 1149
HpyCH4V TGCA 4 cut(s) 370, 950, 1028, 1115
HpyF10VI GCNNNNNNNGC 6 cut(s) 439, 467, 776, 1112, 1259, 1562
HpyF3I CTNAG 6 cut(s) 294, 429, 534, 744, 997, 1389
HpySE526I ACGT 2 cut(s) 312, 1149
Hsp92II CATG 6 cut(s) 263, 968, 986, 1373, 1448, 1565
HspAI GCGC 4 cut(s) 227, 448, 481, 1099
Kzo9I GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
Lsp1109I GCAGC 5 cut(s) 141, 302, 354, 1453, 1471
LweI GCATC 2 cut(s) 214, 457
MaeI CTAG 4 cut(s) 335, 1070, 1170, 1266
MaeII ACGT 2 cut(s) 312, 1149
MaeIII GTNAC 3 cut(s) 263, 353, 1207
MalI GATC 8 cut(s) 72, 204, 383, 570, 784, 810, 1137, 1317
MboI GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
MhlI GDGCHC 4 cut(s) 275, 444, 781, 1592
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 9 cut(s) 14, 47, 358, 418, 584, 857, 863, 1012, 1245
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 8 cut(s) 56, 80, 114, 126, 950, 1070, 1175, 1463
Mox20I TGGCCA 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 258
MseI TTAA 3 cut(s) 543, 975, 1491
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 1429
MspI CCGG 4 cut(s) 93, 155, 180, 230
MspR9I CCNGG 4 cut(s) 93, 155, 1239, 1257
MvaI CCWGG 2 cut(s) 1239, 1257
MvnI CGCG 4 cut(s) 60, 448, 450, 610
MwoI GCNNNNNNNGC 6 cut(s) 439, 467, 776, 1112, 1259, 1562
NciI CCSGG 2 cut(s) 93, 155
NcoI CCATGG 1 cut(s) 259
NdeI CATATG 2 cut(s) 372, 463
NdeII GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
NlaIII CATG 6 cut(s) 263, 968, 986, 1373, 1448, 1565
NlaIV GGNNCC 6 cut(s) 178, 184, 1023, 1300, 1411, 1590
NmeAIII GCCGAG 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 482
NspI RCATGY 3 cut(s) 968, 986, 1565
PaeI GCATGC 1 cut(s) 1565
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 4 cut(s) 209, 325, 1178, 1307
PflFI GACNNNGTC 2 cut(s) 104, 1151
PfoI TCCNGGA 2 cut(s) 153, 1255
PleI GAGTC 8 cut(s) 56, 80, 113, 125, 949, 1070, 1174, 1462
PpsI GAGTC 8 cut(s) 56, 80, 113, 125, 949, 1070, 1174, 1462
Psp124BI GAGCTC 2 cut(s) 275, 444
Psp6I CCWGG 2 cut(s) 1237, 1255
PspFI CCCAGC 1 cut(s) 433
PspGI CCWGG 2 cut(s) 1237, 1255
PspN4I GGNNCC 6 cut(s) 178, 184, 1023, 1300, 1411, 1590
PspOMI GGGCCC 1 cut(s) 1588
PspPI GGNCC 2 cut(s) 1588, 1589
PstI CTGCAG 1 cut(s) 1030
PstNI CAGNNNCTG 1 cut(s) 1429
PsyI GACNNNGTC 2 cut(s) 104, 1151
RsaI GTAC 2 cut(s) 114, 884
RsaNI GTAC 2 cut(s) 113, 883
SacI GAGCTC 2 cut(s) 275, 444
SalI GTCGAC 2 cut(s) 119, 140
SaqAI TTAA 3 cut(s) 543, 975, 1491
Sau3AI GATC 8 cut(s) 70, 202, 381, 568, 782, 808, 1135, 1315
Sau96I GGNCC 2 cut(s) 1588, 1589
SchI GAGTC 8 cut(s) 56, 80, 114, 126, 950, 1070, 1175, 1463
ScrFI CCNGG 4 cut(s) 93, 155, 1239, 1257
SduI GDGCHC 4 cut(s) 275, 444, 781, 1592
SfaNI GCATC 2 cut(s) 214, 457
SfcI CTRYAG 1 cut(s) 1026
SphI GCATGC 1 cut(s) 1565
Sse9I AATT 9 cut(s) 14, 47, 358, 418, 584, 857, 863, 1012, 1245
SspMI CTAG 4 cut(s) 335, 1070, 1170, 1266
SstI GAGCTC 2 cut(s) 275, 444
StyD4I CCNGG 4 cut(s) 91, 153, 1237, 1255
StyI CCWWGG 2 cut(s) 259, 1302
TaaI ACNGT 6 cut(s) 353, 524, 541, 1054, 1196, 1291
TaiI ACGT 2 cut(s) 315, 1152
TaqI TCGA 6 cut(s) 21, 120, 141, 212, 735, 1333
TaqII GACCGA 1 cut(s) 117
TasI AATT 9 cut(s) 14, 47, 358, 418, 584, 857, 863, 1012, 1245
TauI GCSGC 5 cut(s) 243, 246, 399, 1429, 1518
TfiI GAWTC 4 cut(s) 209, 325, 1178, 1307
Tru1I TTAA 3 cut(s) 543, 975, 1491
Tru9I TTAA 3 cut(s) 543, 975, 1491
TscAI CASTG 2 cut(s) 529, 1318
TseI GCWGC 5 cut(s) 129, 290, 367, 1441, 1484
TspDTI ATGAA 7 cut(s) 7, 468, 780, 827, 1146, 1191, 1592
TspGWI ACGGA 2 cut(s) 127, 204
TspRI CASTG 2 cut(s) 529, 1318
Tth111I GACNNNGTC 2 cut(s) 104, 1151
XapI RAATTY 2 cut(s) 14, 418
XceI RCATGY 3 cut(s) 968, 986, 1565
XmiI GTMKAC 2 cut(s) 120, 141
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 4 cut(s) 335, 1070, 1170, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.