pycom08g01710

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017078
Physical Location & Seq
Reverse (-)
1277295 .. 1279254
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
ATGGATCGTCTCGCCTCCCACTTCCTCCTCCTCCTCCTCCTCTCCCTCCTATCCTCCGCCGTCGCCTCCGCCGCAGTTTCCAACGACGCCGACCCTATCATCCGACAAGTCGTTTCGGAAACTGACAAAGATCATCTCCTCCACGCCGAGCACTTCTCCAGCTTCAAAGCCACGTTCGGGAAGACCTACGCGACTCAAGTGGAGCACGACTACAGGTTCGGCGTCTTCAAGGCCAACCTCCGCCGAGCCAAGCGGCACCAGGCGCTCGACCCCTCTGCCGTCCACGGTGTCACCAAGTTCTCTGATCTCACTCCCAAGGAGTTTCGCAGGAACTTTCTCGGACTCAAGCGTCGTCTCCGGCTTCCAGCCGACGAGAACAAGGCTCCGATTCTTCCCACCAATGATCTTCCAACGGACTTTGATTGGCGCGACAAAGGTGCTGTCACGCCGGTGAAGGACCAGGGTTCTTGTGGGTCGTGCTGGGCGTTTAGTGCGACGGGAGCTTTGGAAGGAGCTCATTATTTGGAAACAGGGGAGCTCATCAGTCTGAGTGAGCAGCAGCTTGTTGACTGTGACCATGAGTGTGATCCGGAAGAATATGGCTCGTGTGACTCGGGTTGCAATGGCGGGCTGATGAACAATGCCTTTGAGTACGCACTCAAGGCTGGCGGGCTAGAACGAGAGGAAGATTATCCTTACACCGGGACTGATGACACCTGCAAATTCGACAAGAGCAAAGTTGTTTCTTCCGTGAATAACTTCAGCGTTATTTCTACCGACGACGATCAAATCGCTGCAAATTTGGTTAACCATGGCCCTCTTGCAGTTGGGATCAATGCGGTGTTCATGCAAACATACGTAGGCGGAGTTTCGTGCCCTTACATCTGCGGAAAGCGAATTGATCATGGAGTGCTTCTGGTGGGTTATGGTTCTTCGGGTTTTGCTCCGATTCGATTTAAGGAGAAGCCGTACTGGATCTTGAAGAATTCATGGGGACAGAGCTGGGGAGAACAGGGATATTACAAGATCTGCAGGGGTTATAATTCTTGTGGGGTGGATTCCTTGGTCTCAACTGTTGCTGCTCTGCATACATCCAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

368

Amino Acids

40.3

Weight (kDa)

5.84

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 52 - 108 7.4e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 136 - 358 1.1e-74 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AarI CACCTGC 1 cut(s) 725
AasI GACNNNNNNGTC 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 255
AccII CGCG 2 cut(s) 191, 429
AccIII TCCGGA 1 cut(s) 589
AclWI GGATC 4 cut(s) 12, 581, 839, 983
AcsI RAATTY 3 cut(s) 722, 799, 985
AcuI CTGAAG 1 cut(s) 745
AcyI GRCGYC 2 cut(s) 87, 222
AfaI GTAC 2 cut(s) 653, 971
AfiI CCNNNNNNNGG 2 cut(s) 177, 701
AgsI TTSAA 3 cut(s) 166, 229, 982
AjnI CCWGG 2 cut(s) 258, 459
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 6 cut(s) 162, 503, 515, 538, 562, 1002
AluI AGCT 6 cut(s) 162, 503, 515, 538, 562, 1002
Alw21I GWGCWC 4 cut(s) 153, 207, 517, 540
Alw26I GTCTC 3 cut(s) 14, 359, 1072
AlwI GGATC 4 cut(s) 12, 581, 839, 983
Ama87I CYCGRG 1 cut(s) 613
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 2 cut(s) 231, 814
ApeKI GCWGC 4 cut(s) 556, 559, 794, 1079
ApoI RAATTY 3 cut(s) 722, 799, 985
ArsI GACNNNNNNTTYG 6 cut(s) 200, 232, 426, 458, 487, 519
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 2 cut(s) 265, 429
AspS9I GGNCC 2 cut(s) 457, 815
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 2 cut(s) 283, 463
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 878
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 517, 540
BauI CACGAG 1 cut(s) 604
BbsI GAAGAC 2 cut(s) 188, 217
Bbv12I GWGCWC 4 cut(s) 153, 207, 517, 540
BbvI GCAGC 4 cut(s) 568, 571, 781, 1066
BceAI ACGGC 3 cut(s) 44, 263, 952
BcgI CGANNNNNNTGC 4 cut(s) 257, 291, 419, 453
BciT130I CCWGG 2 cut(s) 260, 461
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 14, 359, 1072
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 2 cut(s) 211, 1030
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 725
BglII AGATCT 1 cut(s) 1026
BisI GCNGC 6 cut(s) 72, 254, 557, 560, 795, 1080
BlsI GCNGC 6 cut(s) 73, 255, 558, 561, 796, 1081
Bme1390I CCNGG 3 cut(s) 260, 461, 703
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 457, 815
BmiI GGNNCC 2 cut(s) 257, 384
BmrFI CCNGG 3 cut(s) 260, 461, 703
BpiI GAAGAC 2 cut(s) 188, 217
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 142
BpuEI CTTGAG 3 cut(s) 180, 329, 644
BpuMI CCSGG 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 2 cut(s) 87, 222
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 5 cut(s) 283, 315, 460, 811, 1062
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 953, 983
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 701
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 977
Bse3DI GCAATG 1 cut(s) 628
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 2 cut(s) 260, 461
BseDI CCNNGG 5 cut(s) 283, 315, 460, 811, 1062
BseGI GGATG 2 cut(s) 99, 1091
BseLI CCNNNNNNNGG 2 cut(s) 177, 701
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 977
BseRI GAGGAG 6 cut(s) 17, 20, 23, 26, 29, 128
BseSI GKGCMC 1 cut(s) 878
BseXI GCAGC 4 cut(s) 568, 571, 781, 1066
BseYI CCCAGC 2 cut(s) 480, 1002
Bsh1236I CGCG 2 cut(s) 191, 429
BshFI GGCC 2 cut(s) 233, 816
BshNI GGYRCC 1 cut(s) 255
BsiHKAI GWGCWC 4 cut(s) 153, 207, 517, 540
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 4 cut(s) 358, 449, 590, 702
BslFI GGGAC 2 cut(s) 718, 1008
BslI CCNNNNNNNGG 2 cut(s) 177, 701
BsmAI GTCTC 3 cut(s) 14, 359, 1072
BsmBI CGTCTC 2 cut(s) 14, 359
BsmFI GGGAC 2 cut(s) 718, 1008
BsnI GGCC 2 cut(s) 233, 816
Bso31I GGTCTC 1 cut(s) 1072
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 5 cut(s) 153, 207, 517, 540, 878
Bsp13I TCCGGA 1 cut(s) 589
Bsp19I CCATGG 1 cut(s) 811
BspANI GGCC 2 cut(s) 233, 816
BspCNI CTCAG 1 cut(s) 540
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 2 cut(s) 191, 429
BspLI GGNNCC 2 cut(s) 257, 384
BspMAI CTGCAG 1 cut(s) 1034
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 4 cut(s) 12, 581, 839, 983
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 1072
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 977
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 283, 315, 460, 811, 1062
BssNI GRCGYC 2 cut(s) 87, 222
BssSI CACGAG 1 cut(s) 604
BssT1I CCWWGG 3 cut(s) 315, 811, 1062
Bst2BI CACGAG 1 cut(s) 604
Bst2UI CCWGG 2 cut(s) 260, 461
Bst4CI ACNGT 3 cut(s) 287, 572, 1075
BstACI GRCGYC 2 cut(s) 87, 222
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 3 cut(s) 629, 667, 671
BstDEI CTNAG 1 cut(s) 548
BstDSI CCRYGG 2 cut(s) 283, 811
BstF5I GGATG 2 cut(s) 99, 1091
BstFNI CGCG 2 cut(s) 191, 429
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 429
BstMAI GTCTC 3 cut(s) 14, 359, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 71, 262, 491, 500, 662
BstNI CCWGG 2 cut(s) 260, 461
BstSCI CCNGG 3 cut(s) 258, 459, 701
BstSFI CTRYAG 2 cut(s) 211, 1030
BstSLI GKGCMC 1 cut(s) 878
BstSNI TACGTA 1 cut(s) 859
BstUI CGCG 2 cut(s) 191, 429
BstV1I GCAGC 4 cut(s) 568, 571, 781, 1066
BstV2I GAAGAC 2 cut(s) 188, 217
BstX2I RGATCY 2 cut(s) 975, 1026
BstYI RGATCY 2 cut(s) 975, 1026
BsuRI GGCC 2 cut(s) 233, 816
BtgI CCRYGG 2 cut(s) 283, 811
BtsCI GGATG 2 cut(s) 99, 1091
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 3 cut(s) 629, 667, 671
CfoI GCGC 2 cut(s) 265, 429
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 457, 815
CseI GACGC 3 cut(s) 95, 211, 338
Csp6I GTAC 2 cut(s) 652, 970
CviAII CATG 5 cut(s) 578, 812, 847, 905, 990
CviQI GTAC 2 cut(s) 652, 970
DdeI CTNAG 1 cut(s) 548
DrdI GACNNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 348
EciI GGCGGA 4 cut(s) 46, 58, 230, 879
Ecl136II GAGCTC 2 cut(s) 515, 538
Eco105I TACGTA 1 cut(s) 859
Eco130I CCWWGG 3 cut(s) 315, 811, 1062
Eco24I GRGCYC 2 cut(s) 517, 540
Eco31I GGTCTC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 515, 538
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 613
EcoICRI GAGCTC 2 cut(s) 515, 538
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 258, 459
EcoT14I CCWWGG 3 cut(s) 315, 811, 1062
EcoT38I GRGCYC 2 cut(s) 517, 540
ErhI CCWWGG 3 cut(s) 315, 811, 1062
Esp3I CGTCTC 2 cut(s) 14, 359
FaeI CATG 5 cut(s) 581, 815, 850, 908, 993
FaqI GGGAC 2 cut(s) 718, 1008
FatI CATG 5 cut(s) 577, 811, 846, 904, 989
FauI CCCGC 2 cut(s) 620, 662
FbaI TGATCA 1 cut(s) 901
Fnu4HI GCNGC 6 cut(s) 72, 254, 557, 560, 795, 1080
FokI GGATG 2 cut(s) 86, 1078
FriOI GRGCYC 2 cut(s) 517, 540
Fsp4HI GCNGC 6 cut(s) 72, 254, 557, 560, 795, 1080
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 264, 428
GluI GCNGC 6 cut(s) 72, 254, 557, 560, 795, 1080
GsaI CCCAGC 2 cut(s) 484, 1006
GsuI CTGGAG 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 2 cut(s) 233, 816
HapII CCGG 4 cut(s) 358, 449, 590, 702
HgaI GACGC 3 cut(s) 95, 211, 338
HhaI GCGC 2 cut(s) 265, 429
Hin1I GRCGYC 2 cut(s) 87, 222
Hin1II CATG 5 cut(s) 581, 815, 850, 908, 993
Hin6I GCGC 2 cut(s) 263, 427
HinP1I GCGC 2 cut(s) 263, 427
HincII GTYRAC 2 cut(s) 568, 808
HindII GTYRAC 2 cut(s) 568, 808
HinfI GANTC 6 cut(s) 193, 342, 388, 611, 949, 1058
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 4 cut(s) 358, 449, 590, 702
HphI GGTGA 2 cut(s) 283, 463
Hpy166II GTNNAC 3 cut(s) 283, 568, 808
Hpy188I TCNGA 7 cut(s) 104, 118, 304, 341, 387, 549, 948
Hpy188III TCNNGA 3 cut(s) 178, 590, 979
Hpy8I GTNNAC 3 cut(s) 283, 568, 808
Hpy99I CGWCG 7 cut(s) 65, 89, 354, 374, 499, 782, 785
HpyAV CCTTC 2 cut(s) 448, 503
HpyCH4III ACNGT 3 cut(s) 287, 572, 1075
HpyCH4IV ACGT 2 cut(s) 173, 858
HpyCH4V TGCA 7 cut(s) 621, 720, 797, 824, 850, 1032, 1087
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 262, 491, 500, 662
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 2 cut(s) 173, 858
Hsp92I GRCGYC 2 cut(s) 87, 222
Hsp92II CATG 5 cut(s) 581, 815, 850, 908, 993
HspAI GCGC 2 cut(s) 263, 427
Kpn2I TCCGGA 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 901
KspAI GTTAAC 1 cut(s) 808
LmnI GCTCC 6 cut(s) 202, 388, 500, 512, 535, 949
Lsp1109I GCAGC 4 cut(s) 568, 571, 781, 1066
MaeI CTAG 1 cut(s) 674
MaeII ACGT 2 cut(s) 173, 858
MaeIII GTNAC 4 cut(s) 289, 442, 572, 608
MboII GAAGA 9 cut(s) 193, 217, 383, 398, 605, 698, 738, 924, 994
MflI RGATCY 2 cut(s) 975, 1026
MhlI GDGCHC 5 cut(s) 153, 207, 517, 540, 878
MluCI AATT 5 cut(s) 722, 799, 897, 985, 1042
MlyI GAGTC 3 cut(s) 187, 336, 605
MmeI TCCRAC 3 cut(s) 105, 127, 434
MroI TCCGGA 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 2 cut(s) 807, 957
MslI CAYNNNNRTG 2 cut(s) 449, 582
MspI CCGG 4 cut(s) 358, 449, 590, 702
MspR9I CCNGG 3 cut(s) 260, 461, 703
MvaI CCWGG 2 cut(s) 260, 461
MvnI CGCG 2 cut(s) 191, 429
MwoI GCNNNNNNNGC 5 cut(s) 71, 262, 491, 500, 662
NciI CCSGG 1 cut(s) 703
NcoI CCATGG 1 cut(s) 811
NlaIII CATG 5 cut(s) 581, 815, 850, 908, 993
NlaIV GGNNCC 2 cut(s) 257, 384
NmeAIII GCCGAG 2 cut(s) 172, 269
NmuCI GTSAC 4 cut(s) 289, 442, 572, 608
OliI CACNNNNGTG 1 cut(s) 449
PaqCI CACCTGC 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 3 cut(s) 388, 949, 1058
PkrI GCNGC 6 cut(s) 73, 255, 558, 561, 796, 1081
PleI GAGTC 3 cut(s) 187, 336, 605
PpsI GAGTC 3 cut(s) 187, 336, 605
Ppu21I YACGTR 1 cut(s) 859
PsiI TTATAA 1 cut(s) 1041
Psp124BI GAGCTC 2 cut(s) 517, 540
Psp6I CCWGG 2 cut(s) 258, 459
PspFI CCCAGC 2 cut(s) 480, 1002
PspGI CCWGG 2 cut(s) 258, 459
PspN4I GGNNCC 2 cut(s) 257, 384
PspPI GGNCC 2 cut(s) 457, 815
PstI CTGCAG 1 cut(s) 1034
PsuI RGATCY 2 cut(s) 975, 1026
RsaI GTAC 2 cut(s) 653, 971
RsaNI GTAC 2 cut(s) 652, 970
RseI CAYNNNNRTG 2 cut(s) 449, 582
SacI GAGCTC 2 cut(s) 517, 540
SaqAI TTAA 2 cut(s) 807, 957
SatI GCNGC 6 cut(s) 72, 254, 557, 560, 795, 1080
Sau96I GGNCC 2 cut(s) 457, 815
SchI GAGTC 3 cut(s) 187, 336, 605
ScrFI CCNGG 3 cut(s) 260, 461, 703
SduI GDGCHC 5 cut(s) 153, 207, 517, 540, 878
SfcI CTRYAG 2 cut(s) 211, 1030
SgrAI CRCCGGYG 1 cut(s) 448
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 449, 582
SmlI CTYRAG 3 cut(s) 195, 344, 659
SmoI CTYRAG 3 cut(s) 195, 344, 659
SnaBI TACGTA 1 cut(s) 859
Sse9I AATT 5 cut(s) 722, 799, 897, 985, 1042
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 2 cut(s) 517, 540
StyD4I CCNGG 3 cut(s) 258, 459, 701
StyI CCWWGG 3 cut(s) 315, 811, 1062
TaaI ACNGT 3 cut(s) 287, 572, 1075
TaiI ACGT 2 cut(s) 176, 861
TaqI TCGA 3 cut(s) 267, 726, 952
TasI AATT 5 cut(s) 722, 799, 897, 985, 1042
TauI GCSGC 2 cut(s) 74, 256
TfiI GAWTC 3 cut(s) 388, 949, 1058
Tru1I TTAA 2 cut(s) 807, 957
Tru9I TTAA 2 cut(s) 807, 957
TseFI GTSAC 4 cut(s) 289, 442, 572, 608
TseI GCWGC 4 cut(s) 556, 559, 794, 1079
Tsp45I GTSAC 4 cut(s) 289, 442, 572, 608
TspDTI ATGAA 3 cut(s) 650, 835, 978
TspGWI ACGGA 2 cut(s) 428, 739
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 3 cut(s) 722, 799, 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.