pycom08g02360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013191
Physical Location & Seq
Reverse (-)
1740669 .. 1741916
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGGGATCACTCGTGCCAGGATGGGACTCACCTGTCTTAAGGTCCAAGCCAGGAGTTCAGAAGAATAAATCACTCACCATGGAGGAGATTGAAGCTTACTGGAAAACACACAAGAAATCAAATAGCATCAACCAGGAAATTAGCACGGCTGATGAACCGGGAAGAAGAATCCAGAAATCCAGCTCGTTTCCTGTGACCACAACAAAGATCGGCAGTACAGATACTGAAACAAGCCCTAGGACTCAAAAAATCTTAAACAACAATGGCTGGTGGACAGCGAGCAATTGGGCATTTCTGAATGAACCTCCAATATTAGAAGAAAGCGATTCCAAAACTAGTTATGCAGCACAGTTTCATGTGGCCAACAGCTGGGCCCCAAAATCAAACGGCCATGATCAAATTAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

7.99

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 369
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 2 cut(s) 360, 388
AfaI GTAC 2 cut(s) 217, 406
AfiI CCNNNNNNNGG 1 cut(s) 369
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 92
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 3 cut(s) 16, 49, 132
AluBI AGCT 3 cut(s) 95, 183, 369
AluI AGCT 3 cut(s) 95, 183, 369
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 3 cut(s) 360, 372, 388
ApaI GGGCCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 344
AspA2I CCTAGG 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 42, 372, 373
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 21, 67
AvaII GGWCC 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 11
BbvI GCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 15
BceAI ACGGC 2 cut(s) 162, 403
BciT130I CCWGG 3 cut(s) 18, 51, 134
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 237, 336
BfrI CTTAAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 345
BlnI CCTAGG 1 cut(s) 236
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 4 cut(s) 18, 51, 134, 159
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 42, 372, 373
BmiI GGNNCC 2 cut(s) 374, 375
BmrFI CCNGG 4 cut(s) 18, 51, 134, 159
BmsI GCATC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 78, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 3 cut(s) 18, 51, 134
BseDI CCNNGG 2 cut(s) 78, 236
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 369
BshFI GGCC 3 cut(s) 362, 374, 390
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 3 cut(s) 362, 374, 390
Bsp120I GGGCCC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 5, 207, 394
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 3 cut(s) 362, 374, 390
BspLI GGNNCC 2 cut(s) 374, 375
BspPI GGATC 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 78, 236
BssMI GATC 3 cut(s) 5, 207, 394
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 78, 236
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 3 cut(s) 18, 51, 134
Bst4CI ACNGT 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 280
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 3 cut(s) 8, 210, 397
BstMBI GATC 3 cut(s) 5, 207, 394
BstNI CCWGG 3 cut(s) 18, 51, 134
BstSCI CCNGG 4 cut(s) 16, 49, 132, 157
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 362, 374, 390
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 42, 372, 373
Csp6I GTAC 2 cut(s) 216, 405
CviAII CATG 3 cut(s) 79, 356, 392
CviQI GTAC 2 cut(s) 216, 405
DpnI GATC 3 cut(s) 7, 209, 396
DpnII GATC 3 cut(s) 5, 207, 394
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 2 cut(s) 360, 388
Eco130I CCWWGG 2 cut(s) 78, 236
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 16, 49, 132
EcoT14I CCWWGG 2 cut(s) 78, 236
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 78, 236
FaeI CATG 3 cut(s) 82, 359, 395
FaiI YATR 4 cut(s) 80, 342, 357, 393
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 78, 355, 391
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 2 cut(s) 237, 336
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 3 cut(s) 362, 374, 390
HapII CCGG 1 cut(s) 158
Hin1II CATG 3 cut(s) 82, 359, 395
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 4 cut(s) 26, 168, 241, 326
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 21, 67
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 60, 297
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 344
Hsp92II CATG 3 cut(s) 82, 359, 395
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 5, 207, 394
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 237, 336
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 7, 209, 396
MboI GATC 3 cut(s) 5, 207, 394
MboII GAAGA 4 cut(s) 73, 174, 177, 329
MfeI CAATTG 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 3 cut(s) 138, 283, 399
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 2 cut(s) 20, 235
MnlI CCTC 2 cut(s) 76, 315
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MseI TTAA 2 cut(s) 38, 254
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 37
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 4 cut(s) 18, 51, 134, 159
MunI CAATTG 1 cut(s) 283
MvaI CCWGG 3 cut(s) 18, 51, 134
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 78
NdeII GATC 3 cut(s) 5, 207, 394
NlaIII CATG 3 cut(s) 82, 359, 395
NlaIV GGNNCC 2 cut(s) 374, 375
NmuCI GTSAC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 168, 326
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 2 cut(s) 20, 235
PpsI GAGTC 2 cut(s) 20, 235
Psp6I CCWGG 3 cut(s) 16, 49, 132
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 3 cut(s) 16, 49, 132
PspN4I GGNNCC 2 cut(s) 374, 375
PspOMI GGGCCC 1 cut(s) 372
PspPI GGNCC 3 cut(s) 42, 372, 373
PstNI CAGNNNCTG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 369
RsaI GTAC 2 cut(s) 217, 406
RsaNI GTAC 2 cut(s) 216, 405
SaqAI TTAA 2 cut(s) 38, 254
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 5, 207, 394
Sau96I GGNCC 3 cut(s) 42, 372, 373
SchI GAGTC 2 cut(s) 20, 235
ScrFI CCNGG 4 cut(s) 18, 51, 134, 159
SduI GDGCHC 1 cut(s) 376
SetI ASST 7 cut(s) 34, 44, 97, 185, 307, 371, 410
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 3 cut(s) 138, 283, 399
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 237, 336
StyD4I CCNGG 4 cut(s) 16, 49, 132, 157
StyI CCWWGG 2 cut(s) 78, 236
TaaI ACNGT 1 cut(s) 351
TasI AATT 3 cut(s) 138, 283, 399
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 2 cut(s) 168, 326
Tru1I TTAA 2 cut(s) 38, 254
Tru9I TTAA 2 cut(s) 38, 254
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 168, 315, 344
Van91I CCANNNNNTGG 1 cut(s) 369
Vha464I CTTAAG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 42
XmaJI CCTAGG 1 cut(s) 236
XspI CTAG 2 cut(s) 237, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.