Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008245

Physical Location & Seq

Genomic Coordinates Forward (+)

3395996 .. 3398015

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGTGAAAGAGGAGGAGGAGGTTCTCGATCCCTCGGGCGATACTACATACGAAAGTGAACCGAAAAAAGGGTGCTGTGATGCTCTCTGCACTCCAATACAATGGTTCAAAATGCTCTGTGTGGAATTGCATTGGAGTTTTGTATGGGGGGTAGTTGTTGTTTATGGAGTAAGTCAGGGACTGGGAGACGCTCTTTCTCGCATCGGTACGGAGTACTACATGAAGGATGTGCAGAAGGTGCAGCCTTCTGAAGCCCAATTTTACCAAGGAATTATCTATATTCCTTGGATTGTCAAGCCTATCTGGGGTCTCCTCACTGATGTTCTCCCCATTTTCGGGTATCGAAGACGGCCTTATTTCATTTTTGCTGGTTCTATTGGTGTGATCTCGATGCTCCTAATATCGTTCCACGAAAAGCTGCATCTCGCACTTGCCATCTTGGTGTTAACAGGTGGAAGTGCTGGAGTTGCTATAGCAGATGTCACCATAGATGCCTGTGCGGCAAAGAACAGTATCCTTCACCCTTCACTTGCATCAGATATCCAAAGTCTGTGTGCCTTAACTTCGTCCATTGGGGCACTTGTCGGATTCTCCCTTAGTGGTATCTTTGTTCATCTTATAGGCCCTAAGGGAGTTTTCGGCCTGTTGGCAATCCCATCAGGACTTGTCGTTGTAGTTGGAACTCTGCTTGATGAACCTCGCGCACCCAATTTTTCCTTCACATCGGTCGGTCAGAAGTTTATTGATGCTGGAAAAGCCATGTGGACAACATTGAAATGCCCTGAGGTATGGAGACCTTGCTTGTACATGTACTTATCCATTGCATTGAGCTTGAACATCCTCGACGGAATGTTCTACTGGTATACAGACGCGAAGGATGGCCCGTCTCTCTCTGAGGAGAATGTCGGATATATATTCTCGATAGGTTCAGTTGGTTCACTATTGGGGGCAGTACTCTATCAAAATGTTCTGAAGGATCATCCTTTCCGGGAGTTGCTCTTCTGGACTCAGTTGATATACGGGTTGTCAGGAACATTAGATTTGATGCTCGTTTTGCGATTGAATTTGAAGTTTGGCATACCTGATTATTTCTTCGTTGTGATTGATGAAAGTGTATCTCAAATGATAGGAAGGCTCAAATGGATGCCTCTCCTCGTGCTTAGCTCAAGGCTTTGTCCCTCGGGAATTGAAGGAACATTTTTCGCTCTGCTCATGTCAATCGAAAATGTTGGAGTTATGTCAGCATCGTGGGGAGGAGGCGTCTTACTGCATGCATTGAAGGTTACAAGGACAAAATTTGATAATCTCTGGCTTGCCATTCTGATTAGGAACTTGTTGAGATTAACTCCTCTCTTTCTGCTGTTTTTGGTACCCAAATCTGATGTGAGATCCGCCATTCTTCCAACAGAAATTTTGAACACGAAAGGGGATATTGAAACTACAGAAACAGAGAACATTGAATTGGTCTCCCTTGTTAAGAGAGTTGATGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

499

Amino Acids

54.93

Weight (kDa)

5.6

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25050
fragaria_vesca	FvH4_2g41231
malus_domestica	MD08G1053000.v1.1 MD08G1053100.v1.1
prunus_persica	Prupe.1G395900_v2.0.a1
pyrus_communis	pycom08g04420 pycom08g04430
rosa_chinensis	RchiOBHm_Chr6g0299271
rosa_laevigata	RLG00000011447
rosa_multiflora	Rmu_sc0001434.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168840
rosa_rugosa	Rorug06G0286700
rosa_samantha	Rh6AG398100 Rh6AG398200 Rh6BG406600 Rh6CG412700 Rh6DG399400
rosa_wichuraiana	Rw6G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1369
AccB1I	GGYRCC	1 cut(s)	1369
AccI	GTMKAC	1 cut(s)	863
AccII	CGCG	2 cut(s)	702, 872
AciI	CCGC	2 cut(s)	500, 1392
AclWI	GGATC	3 cut(s)	23, 984, 1383
AcsI	RAATTY	3 cut(s)	1063, 1295, 1410
AcuI	CTGAAG	2 cut(s)	270, 992
AcyI	GRCGYC	1 cut(s)	1260
AfaI	GTAC	6 cut(s)	208, 215, 806, 812, 954, 1371
AfiI	CCNNNNNNNGG	4 cut(s)	68, 305, 335, 336
AflIII	ACRYGT	1 cut(s)	807
AjuI	GAANNNNNNNTTGG	4 cut(s)	701, 733, 1445, 1477
AluBI	AGCT	3 cut(s)	418, 831, 1164
AluI	AGCT	3 cut(s)	418, 831, 1164
Alw26I	GTCTC	5 cut(s)	180, 314, 787, 891, 1471
AlwI	GGATC	3 cut(s)	23, 984, 1383
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	34, 1180
AoxI	GGCC	4 cut(s)	350, 622, 640, 880
ApeKI	GCWGC	2 cut(s)	241, 418
ApoI	RAATTY	3 cut(s)	1063, 1295, 1410
Asp718I	GGTACC	1 cut(s)	1369
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	623, 881
AsuC2I	CCSGG	1 cut(s)	989
AsuHPI	GGTGA	3 cut(s)	16, 475, 512
AvaI	CYCGRG	2 cut(s)	34, 1180
AxyI	CCTNAGG	2 cut(s)	627, 783
BaeGI	GKGCMC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	1369
BauI	CACGAG	1 cut(s)	1154
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	253, 405
BccI	CCATC	4 cut(s)	443, 664, 872, 1481
BceAI	ACGGC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	989
BcoDI	GTCTC	5 cut(s)	180, 314, 787, 891, 1471
BfmI	CTRYAG	2 cut(s)	471, 1440
BfuI	GTATCC	1 cut(s)	524
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	3 cut(s)	242, 419, 501
BlpI	GCTNAGC	1 cut(s)	1160
BlsI	GCNGC	3 cut(s)	243, 420, 502
BmcAI	AGTACT	2 cut(s)	215, 954
Bme1390I	CCNGG	1 cut(s)	989
BmeT110I	CYCGRG	2 cut(s)	34, 1180
BmgT120I	GGNCC	2 cut(s)	623, 881
BmiI	GGNNCC	1 cut(s)	1371
BmrFI	CCNGG	1 cut(s)	989
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	1330, 1362
BpmI	CTGGAG	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	1150
BpuMI	CCSGG	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	1260
BsaI	GGTCTC	3 cut(s)	314, 787, 1471
BsaJI	CCNNGG	4 cut(s)	33, 265, 284, 1179
BsaXI	ACNNNNNCTCC	2 cut(s)	1245, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 305, 335, 336
Bse1I	ACTGG	2 cut(s)	186, 863
Bse21I	CCTNAGG	2 cut(s)	627, 783
Bse3DI	GCAATG	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	33, 265, 284, 1179
BseGI	GGATG	5 cut(s)	232, 837, 883, 979, 1149
BseLI	CCNNNNNNNGG	4 cut(s)	68, 305, 335, 336
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	774, 885, 1022
BseNI	ACTGG	2 cut(s)	186, 863
BseRI	GAGGAG	8 cut(s)	26, 29, 32, 302, 911, 1142, 1269, 1338
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	253, 405
BsgI	GTGCAG	3 cut(s)	73, 251, 260
Bsh1236I	CGCG	2 cut(s)	702, 872
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	4 cut(s)	352, 624, 642, 882
BshNI	GGYRCC	1 cut(s)	1369
BsiEI	CGRYCG	1 cut(s)	729
BsiHKCI	CYCGRG	2 cut(s)	34, 1180
BsiSI	CCGG	1 cut(s)	988
BslFI	GGGAC	2 cut(s)	192, 1161
BslI	CCNNNNNNNGG	4 cut(s)	68, 305, 335, 336
BsmAI	GTCTC	5 cut(s)	180, 314, 787, 891, 1471
BsmBI	CGTCTC	2 cut(s)	180, 891
BsmFI	GGGAC	2 cut(s)	192, 1161
BsnI	GGCC	4 cut(s)	352, 624, 642, 882
Bso31I	GGTCTC	3 cut(s)	314, 787, 1471
BsoBI	CYCGRG	2 cut(s)	34, 1180
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	4 cut(s)	28, 384, 976, 1388
Bsp1720I	GCTNAGC	1 cut(s)	1160
BspACI	CCGC	2 cut(s)	500, 1392
BspANI	GGCC	4 cut(s)	352, 624, 642, 882
BspCNI	CTCAG	3 cut(s)	775, 886, 1021
BspFNI	CGCG	2 cut(s)	702, 872
BspLI	GGNNCC	1 cut(s)	1371
BspPI	GGATC	3 cut(s)	23, 984, 1383
BspQI	GCTCTTC	1 cut(s)	1004
BspT107I	GGYRCC	1 cut(s)	1369
BspTNI	GGTCTC	3 cut(s)	314, 787, 1471
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	2 cut(s)	186, 863
BssECI	CCNNGG	4 cut(s)	33, 265, 284, 1179
BssMI	GATC	4 cut(s)	28, 384, 976, 1388
BssNAI	GTATAC	1 cut(s)	864
BssNI	GRCGYC	1 cut(s)	1260
BssSI	CACGAG	1 cut(s)	1154
BssT1I	CCWWGG	2 cut(s)	265, 284
Bst1107I	GTATAC	1 cut(s)	864
Bst2BI	CACGAG	1 cut(s)	1154
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	1004
BstACI	GRCGYC	1 cut(s)	1260
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	1272, 1314
BstDEI	CTNAG	6 cut(s)	596, 627, 783, 894, 1008, 1160
BstF5I	GGATG	5 cut(s)	232, 837, 883, 979, 1149
BstFNI	CGCG	2 cut(s)	702, 872
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	4 cut(s)	31, 387, 979, 1391
BstMAI	GTCTC	5 cut(s)	180, 314, 787, 891, 1471
BstMBI	GATC	4 cut(s)	28, 384, 976, 1388
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 467, 500, 755, 1054
BstNSI	RCATGY	2 cut(s)	811, 1274
BstSCI	CCNGG	1 cut(s)	987
BstSFI	CTRYAG	2 cut(s)	471, 1440
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	2 cut(s)	702, 872
BstV1I	GCAGC	2 cut(s)	253, 405
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	1388
BstXI	CCANNNNNNTGG	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	1388
BstZ17I	GTATAC	1 cut(s)	864
Bsu36I	CCTNAGG	2 cut(s)	627, 783
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	352, 624, 642, 882
BtsCI	GGATG	5 cut(s)	232, 837, 883, 979, 1149
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	1272, 1314
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	623, 881
CseI	GACGC	3 cut(s)	197, 878, 1249
Csp6I	GTAC	6 cut(s)	207, 214, 805, 811, 953, 1370
CviAII	CATG	5 cut(s)	220, 760, 808, 1213, 1271
CviQI	GTAC	6 cut(s)	207, 214, 805, 811, 953, 1370
DdeI	CTNAG	6 cut(s)	596, 627, 783, 894, 1008, 1160
DpnI	GATC	4 cut(s)	30, 386, 978, 1390
DpnII	GATC	4 cut(s)	28, 384, 976, 1388
Eam1104I	CTCTTC	1 cut(s)	1004
EarI	CTCTTC	1 cut(s)	1004
EciI	GGCGGA	1 cut(s)	1381
Eco130I	CCWWGG	2 cut(s)	265, 284
Eco31I	GGTCTC	3 cut(s)	314, 787, 1471
Eco32I	GATATC	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	270, 992
Eco81I	CCTNAGG	2 cut(s)	627, 783
Eco88I	CYCGRG	2 cut(s)	34, 1180
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	265, 284
EcoT22I	ATGCAT	1 cut(s)	1276
ErhI	CCWWGG	2 cut(s)	265, 284
Esp3I	CGTCTC	2 cut(s)	180, 891
FaeI	CATG	5 cut(s)	223, 763, 811, 1216, 1274
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FaqI	GGGAC	2 cut(s)	192, 1161
FatI	CATG	5 cut(s)	219, 759, 807, 1212, 1270
FblI	GTMKAC	1 cut(s)	863
Fnu4HI	GCNGC	3 cut(s)	242, 419, 501
FokI	GGATG	5 cut(s)	239, 824, 890, 966, 1156
Fsp4HI	GCNGC	3 cut(s)	242, 419, 501
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	3 cut(s)	242, 419, 501
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	4 cut(s)	352, 624, 642, 882
HapII	CCGG	1 cut(s)	988
HgaI	GACGC	3 cut(s)	197, 878, 1249
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	1260
Hin1II	CATG	5 cut(s)	223, 763, 811, 1216, 1274
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	2 cut(s)	588, 1006
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	1 cut(s)	988
HphI	GGTGA	3 cut(s)	16, 475, 512
Hpy166II	GTNNAC	5 cut(s)	59, 447, 765, 864, 938
Hpy188I	TCNGA	9 cut(s)	250, 538, 587, 735, 895, 908, 972, 1323, 1381
Hpy188III	TCNNGA	7 cut(s)	26, 388, 660, 919, 1003, 1029, 1182
Hpy8I	GTNNAC	5 cut(s)	59, 447, 765, 864, 938
Hpy99I	CGWCG	1 cut(s)	848
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	9 cut(s)	90, 130, 232, 241, 421, 533, 824, 1270, 1274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 467, 500, 755, 1054
HpyF3I	CTNAG	6 cut(s)	596, 627, 783, 894, 1008, 1160
Hsp92I	GRCGYC	1 cut(s)	1260
Hsp92II	CATG	5 cut(s)	223, 763, 811, 1216, 1274
HspAI	GCGC	1 cut(s)	702
KpnI	GGTACC	1 cut(s)	1373
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	28, 384, 976, 1388
LguI	GCTCTTC	1 cut(s)	1004
LmnI	GCTCC	1 cut(s)	399
Lsp1109I	GCAGC	2 cut(s)	253, 405
MaeIII	GTNAC	2 cut(s)	481, 1282
MalI	GATC	4 cut(s)	30, 386, 978, 1390
MboI	GATC	4 cut(s)	28, 384, 976, 1388
MboII	GAAGA	4 cut(s)	357, 991, 1084, 1391
MflI	RGATCY	1 cut(s)	1388
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	9 cut(s)	125, 257, 270, 709, 1063, 1185, 1295, 1410, 1460
MlyI	GAGTC	1 cut(s)	1000
MmeI	TCCRAC	5 cut(s)	565, 658, 886, 1210, 1427
Mph1103I	ATGCAT	1 cut(s)	1276
MseI	TTAA	4 cut(s)	446, 560, 1343, 1476
MslI	CAYNNNNRTG	2 cut(s)	440, 775
MspI	CCGG	1 cut(s)	988
MspR9I	CCNGG	1 cut(s)	989
MvnI	CGCG	2 cut(s)	702, 872
MwoI	GCNNNNNNNGC	5 cut(s)	238, 467, 500, 755, 1054
NciI	CCSGG	1 cut(s)	989
NdeII	GATC	4 cut(s)	28, 384, 976, 1388
NlaIII	CATG	5 cut(s)	223, 763, 811, 1216, 1274
NlaIV	GGNNCC	1 cut(s)	1371
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	1276
NspI	RCATGY	2 cut(s)	811, 1274
PaeI	GCATGC	1 cut(s)	1274
PciI	ACATGT	1 cut(s)	807
PciSI	GCTCTTC	1 cut(s)	1004
PfeI	GAWTC	1 cut(s)	588
PfoI	TCCNGGA	1 cut(s)	987
PkrI	GCNGC	3 cut(s)	243, 420, 502
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
PscI	ACATGT	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	1371
PspPI	GGNCC	2 cut(s)	623, 881
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	1388
RsaI	GTAC	6 cut(s)	208, 215, 806, 812, 954, 1371
RsaNI	GTAC	6 cut(s)	207, 214, 805, 811, 953, 1370
RseI	CAYNNNNRTG	2 cut(s)	440, 775
SapI	GCTCTTC	1 cut(s)	1004
SaqAI	TTAA	4 cut(s)	446, 560, 1343, 1476
SatI	GCNGC	3 cut(s)	242, 419, 501
Sau3AI	GATC	4 cut(s)	28, 384, 976, 1388
Sau96I	GGNCC	2 cut(s)	623, 881
ScaI	AGTACT	2 cut(s)	215, 954
SchI	GAGTC	1 cut(s)	1000
ScrFI	CCNGG	1 cut(s)	989
SduI	GDGCHC	1 cut(s)	580
SfcI	CTRYAG	2 cut(s)	471, 1440
SmiMI	CAYNNNNRTG	2 cut(s)	440, 775
SmlI	CTYRAG	1 cut(s)	1165
SmoI	CTYRAG	1 cut(s)	1165
SphI	GCATGC	1 cut(s)	1274
Sse9I	AATT	9 cut(s)	125, 257, 270, 709, 1063, 1185, 1295, 1410, 1460
SsiI	CCGC	2 cut(s)	500, 1392
StyD4I	CCNGG	1 cut(s)	987
StyI	CCWWGG	2 cut(s)	265, 284
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	6 cut(s)	27, 343, 389, 843, 920, 1221
TaqII	GACCGA	2 cut(s)	715, 719
TasI	AATT	9 cut(s)	125, 257, 270, 709, 1063, 1185, 1295, 1410, 1460
TatI	WGTACW	4 cut(s)	213, 804, 810, 952
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	4 cut(s)	446, 560, 1343, 1476
Tru9I	TTAA	4 cut(s)	446, 560, 1343, 1476
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	241, 418
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	5 cut(s)	236, 349, 602, 708, 1122
TspGWI	ACGGA	2 cut(s)	224, 861
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	3 cut(s)	1063, 1295, 1410
XceI	RCATGY	2 cut(s)	811, 1274
XmiI	GTMKAC	1 cut(s)	863
ZrmI	AGTACT	2 cut(s)	215, 954
Zsp2I	ATGCAT	1 cut(s)	1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.