Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008245

Physical Location & Seq

Genomic Coordinates Forward (+)

59461011 .. 59463707

Gene Structure 2697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGATGGTGGAGGAGGAAGAAGAACTCAAACCCTGCGGTGGAATTGATGTTGCAGAAGAAAATGAAAGGAAGAGGAGGTGTTGTGATGGTCCAAGTCCAATCCAATGGTTCAGGATGCTGTGTAGGGAACTGCATTGGAGTTTTGTGTTAGGGGTGGTTGTTGTTTATGGAATAAGTCAAGGATTTGGTGGAGCTATGTACCGGGTGGGCACAGAATATTACATGAAGGATGTTCAAAAGGTGCAGCCTTCTCAAGCCCAATTTTATCAAGGAATTACTTCCATTCCATGGCTTGTCAAGCCTCTCTGGGGTCTCCTCACCGATGTTCTCCCACTTTTTGGCTATCGAAGACGCCCTTATTTCATTCTAGCAGGCTCCATTGGCGTGATCGCTATGCTTGTGTTATCATTCCATGAAAAGCTGCACATTGCATTTGCCATCTTGGCATTAACAGTTGGAAGTGCTGGAGTAGCTGTAGCCGATGTCACCATAGATGCTTGTGTGGCACAGAACAGTATTAACCATCATTCACTTGCAGCCGATATGCAAAGCCTGTGTGCCTTGAGTTCCTCCATCGGGGCACTTTTGGGATTCTCTGTCAGTGGTATATTTGTTCATCTTATAGGCCCAAAGGGGCTATATGGCTTGTTGGCAATCCCATCTGGACTTGTATTTTTACTTGGAACTCTGCTTAAGGAACCTCATTCACCCAATTTCGCTTACACGCAGGTCAATCAGAAGTTTATTGATGCTGGTAAGTCTATGTGGACCACATTGAAATGCCCTGACGTATGGAGACCATGCTTATACATGTACTTATCACTTGCATTAAGCTTGAACATCCTTGATGGAATGTTCTTCTGGTATACAGACTCAAAGGGGGGTCCATCTTTCTCTCAGGAGAACGTGGGATTTATATTCTCTATAGGCTCAGTTGGTTCCATTTTGGGGGCAGTACTCTATCAGTATGTCCTAAAGGATCATCCTTTCCGGGACTTGCTCTTCTGGACTCAGTTGGTTTATGGTTTATCAGGAATGCTAGATTTGATGCTGGTCTTACGGTTAAATTTGAGATTTGGCATGCCTGATTACTTCTTTGTTGTGATTGATGAAAGTGTATCACAAATGACTGGAAGGCTCAAATGGATGCCTCTTCTGGTGCTTAGCTCAAAGCTTTGCCCCACAGGAATTGAAGGAACTTTTTTTGCGTTGCTCATGTCAATTGACAATGTTGGACTTCTGTCGGCGACTTGGGGAGGAGGCTTCCTGCTGCATGTATTGAAGGTTACACGGACACAATTCGATAATCTTTGGCTTGCAATTCTGATTAGGAATGTGTTGAGATTAACTCCACTATGTCTGCTATTTTTGGTACCTAGAGTTGATCCCAATTCTTCCATTCTTCCAACTGAAATCTTGAGTACGAAAGACGATATCGAATTTGATACTCCAGAAGCTGAGAACATTGAATTGGTTTCCCTTGTAAGCAGAGTTGATGGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

501

Amino Acids

55.64

Weight (kDa)

5.88

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	60 - 462	9e-119	BT1 family
MFS_1	PF07690	61 - 413	1.6e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25050
fragaria_vesca	FvH4_2g41231
malus_domestica	MD08G1053000.v1.1 MD08G1053100.v1.1
prunus_persica	Prupe.1G395900_v2.0.a1
pyrus_communis	pycom08g04420 pycom08g04430
rosa_chinensis	RchiOBHm_Chr6g0299271
rosa_laevigata	RLG00000011447
rosa_multiflora	Rmu_sc0001434.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168840
rosa_rugosa	Rorug06G0286700
rosa_samantha	Rh6AG398100 Rh6AG398200 Rh6BG406600 Rh6CG412700 Rh6DG399400
rosa_wichuraiana	Rw6G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
Acc65I	GGTACC	1 cut(s)	1372
AccB1I	GGYRCC	1 cut(s)	1372
AccB7I	CCANNNNNTGG	2 cut(s)	288, 338
AccI	GTMKAC	1 cut(s)	866
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	987, 1379
AcsI	RAATTY	2 cut(s)	1066, 1439
AcyI	GRCGYC	1 cut(s)	352
AfaI	GTAC	5 cut(s)	200, 815, 957, 1374, 1423
AfiI	CCNNNNNNNGG	6 cut(s)	38, 288, 308, 338, 576, 948
AflII	CTTAAG	1 cut(s)	692
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	6 cut(s)	236, 778, 838, 1193, 1282, 1469
AjuI	GAANNNNNNNTTGG	2 cut(s)	1454, 1486
AluBI	AGCT	7 cut(s)	194, 421, 473, 834, 1167, 1174, 1457
AluI	AGCT	7 cut(s)	194, 421, 473, 834, 1167, 1174, 1457
Alw26I	GTCTC	2 cut(s)	317, 790
AlwI	GGATC	2 cut(s)	987, 1379
AlwNI	CAGNNNCTG	1 cut(s)	1457
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	4 cut(s)	244, 421, 536, 1270
ApoI	RAATTY	2 cut(s)	1066, 1439
Asp700I	GAANNNNTTC	1 cut(s)	277
Asp718I	GGTACC	1 cut(s)	1372
AspS9I	GGNCC	4 cut(s)	89, 626, 768, 884
AsuC2I	CCSGG	2 cut(s)	203, 992
AsuHPI	GGTGA	3 cut(s)	310, 478, 699
AvaII	GGWCC	3 cut(s)	89, 768, 884
BaeGI	GKGCMC	2 cut(s)	212, 583
BanI	GGYRCC	1 cut(s)	1372
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	4 cut(s)	256, 408, 548, 1257
BccI	CCATC	8 cut(s)	80, 446, 531, 581, 667, 842, 895, 1490
BcnI	CCSGG	2 cut(s)	203, 992
BcoDI	GTCTC	2 cut(s)	317, 790
BfaI	CTAG	3 cut(s)	368, 1040, 1377
BfmI	CTRYAG	2 cut(s)	474, 924
BfrI	CTTAAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	4 cut(s)	245, 422, 537, 1271
BlpI	GCTNAGC	1 cut(s)	1163
BlsI	GCNGC	4 cut(s)	246, 423, 538, 1272
BmcAI	AGTACT	1 cut(s)	957
Bme1390I	CCNGG	2 cut(s)	203, 992
Bme18I	GGWCC	3 cut(s)	89, 768, 884
BmgT120I	GGNCC	4 cut(s)	89, 626, 768, 884
BmiI	GGNNCC	5 cut(s)	376, 699, 885, 940, 1374
BmrFI	CCNGG	2 cut(s)	203, 992
BmsI	GCATC	5 cut(s)	105, 484, 739, 1038, 1137
BoxI	GACNNNNGTC	1 cut(s)	1240
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	1333, 1365
BpmI	CTGGAG	2 cut(s)	486, 1434
Bpu1102I	GCTNAGC	1 cut(s)	1163
BpuEI	CTTGAG	3 cut(s)	237, 583, 1438
BpuMI	CCSGG	2 cut(s)	203, 992
BsaHI	GRCGYC	1 cut(s)	352
BsaI	GGTCTC	2 cut(s)	317, 790
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 459, 489
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 288, 308, 338, 576, 948
Bse1I	ACTGG	1 cut(s)	1135
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	5 cut(s)	120, 235, 840, 982, 1152
BseLI	CCNNNNNNNGG	6 cut(s)	38, 288, 308, 338, 576, 948
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	911, 945, 1025, 1449
BseNI	ACTGG	1 cut(s)	1135
BseRI	GAGGAG	4 cut(s)	26, 88, 305, 1272
BseSI	GKGCMC	2 cut(s)	212, 583
BseXI	GCAGC	4 cut(s)	256, 408, 548, 1257
BsgI	GTGCAG	2 cut(s)	263, 407
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	1 cut(s)	1372
BsiSI	CCGG	2 cut(s)	202, 991
BslFI	GGGAC	1 cut(s)	1007
BslI	CCNNNNNNNGG	6 cut(s)	38, 288, 308, 338, 576, 948
BsmAI	GTCTC	2 cut(s)	317, 790
BsmFI	GGGAC	1 cut(s)	1007
BsmI	GAATGC	1 cut(s)	1041
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	2 cut(s)	317, 790
Bsp1286I	GDGCHC	2 cut(s)	212, 583
Bsp143I	GATC	3 cut(s)	387, 979, 1384
Bsp1720I	GCTNAGC	1 cut(s)	1163
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	4 cut(s)	910, 944, 1024, 1450
BspLI	GGNNCC	5 cut(s)	376, 699, 885, 940, 1374
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	2 cut(s)	987, 1379
BspQI	GCTCTTC	1 cut(s)	1007
BspT107I	GGYRCC	1 cut(s)	1372
BspTI	CTTAAG	1 cut(s)	692
BspTNI	GGTCTC	2 cut(s)	317, 790
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	1135
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	387, 979, 1384
BssNAI	GTATAC	1 cut(s)	867
BssNI	GRCGYC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	287
Bst1107I	GTATAC	1 cut(s)	867
Bst4CI	ACNGT	3 cut(s)	454, 515, 1062
Bst6I	CTCTTC	3 cut(s)	65, 1007, 1158
BstACI	GRCGYC	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	692
BstC8I	GCNNGC	3 cut(s)	373, 1082, 1317
BstDEI	CTNAG	5 cut(s)	897, 931, 1011, 1163, 1458
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	5 cut(s)	120, 235, 840, 982, 1152
BstKTI	GATC	3 cut(s)	390, 982, 1387
BstMAI	GTCTC	2 cut(s)	317, 790
BstMBI	GATC	3 cut(s)	387, 979, 1384
BstMWI	GCNNNNNNNGC	5 cut(s)	298, 381, 443, 470, 503
BstNSI	RCATGY	3 cut(s)	814, 1084, 1277
BstPAI	GACNNNNGTC	1 cut(s)	1240
BstSCI	CCNGG	2 cut(s)	201, 990
BstSFI	CTRYAG	2 cut(s)	474, 924
BstSLI	GKGCMC	2 cut(s)	212, 583
BstV1I	GCAGC	4 cut(s)	256, 408, 548, 1257
BstV2I	GAAGAC	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	867
BsuRI	GGCC	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	5 cut(s)	120, 235, 840, 982, 1152
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	3 cut(s)	373, 1082, 1317
CaiI	CAGNNNCTG	1 cut(s)	1457
Cfr13I	GGNCC	4 cut(s)	89, 626, 768, 884
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	5 cut(s)	199, 814, 956, 1373, 1422
CspCI	CAANNNNNGTGG	2 cut(s)	1171, 1206
CviAII	CATG	8 cut(s)	223, 288, 413, 801, 811, 1081, 1216, 1274
CviQI	GTAC	5 cut(s)	199, 814, 956, 1373, 1422
DdeI	CTNAG	5 cut(s)	897, 931, 1011, 1163, 1458
DpnI	GATC	3 cut(s)	389, 981, 1386
DpnII	GATC	3 cut(s)	387, 979, 1384
Eam1104I	CTCTTC	3 cut(s)	65, 1007, 1158
EarI	CTCTTC	3 cut(s)	65, 1007, 1158
Eco130I	CCWWGG	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	317, 790
Eco32I	GATATC	1 cut(s)	1435
Eco47I	GGWCC	3 cut(s)	89, 768, 884
EcoRV	GATATC	1 cut(s)	1435
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	8 cut(s)	226, 291, 416, 804, 814, 1084, 1219, 1277
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FaqI	GGGAC	1 cut(s)	1007
FatI	CATG	8 cut(s)	222, 287, 412, 800, 810, 1080, 1215, 1273
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	4 cut(s)	245, 422, 537, 1271
FokI	GGATG	5 cut(s)	127, 242, 827, 969, 1159
Fsp4HI	GCNGC	4 cut(s)	245, 422, 537, 1271
FspBI	CTAG	3 cut(s)	368, 1040, 1377
GluI	GCNGC	4 cut(s)	245, 422, 537, 1271
GsuI	CTGGAG	2 cut(s)	486, 1434
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	2 cut(s)	202, 991
HgaI	GACGC	1 cut(s)	360
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	8 cut(s)	226, 291, 416, 804, 814, 1084, 1219, 1277
HindIII	AAGCTT	2 cut(s)	832, 1172
HinfI	GANTC	3 cut(s)	591, 872, 1009
HpaII	CCGG	2 cut(s)	202, 991
HphI	GGTGA	3 cut(s)	310, 478, 699
Hpy166II	GTNNAC	2 cut(s)	768, 867
Hpy188I	TCNGA	2 cut(s)	738, 1326
Hpy188III	TCNNGA	7 cut(s)	112, 663, 899, 1006, 1032, 1417, 1451
Hpy8I	GTNNAC	2 cut(s)	768, 867
HpyAV	CCTTC	5 cut(s)	220, 258, 1128, 1187, 1276
HpyCH4III	ACNGT	3 cut(s)	454, 515, 1062
HpyCH4IV	ACGT	2 cut(s)	789, 906
HpyF10VI	GCNNNNNNNGC	5 cut(s)	298, 381, 443, 470, 503
HpyF3I	CTNAG	5 cut(s)	897, 931, 1011, 1163, 1458
HpySE526I	ACGT	2 cut(s)	789, 906
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	8 cut(s)	226, 291, 416, 804, 814, 1084, 1219, 1277
KpnI	GGTACC	1 cut(s)	1376
Kzo9I	GATC	3 cut(s)	387, 979, 1384
LguI	GCTCTTC	1 cut(s)	1007
LmnI	GCTCC	2 cut(s)	191, 380
Lsp1109I	GCAGC	4 cut(s)	256, 408, 548, 1257
LweI	GCATC	5 cut(s)	105, 484, 739, 1038, 1137
MaeI	CTAG	3 cut(s)	368, 1040, 1377
MaeII	ACGT	2 cut(s)	789, 906
MaeIII	GTNAC	2 cut(s)	484, 1285
MalI	GATC	3 cut(s)	389, 981, 1386
MboI	GATC	3 cut(s)	387, 979, 1384
MfeI	CAATTG	1 cut(s)	1221
MhlI	GDGCHC	2 cut(s)	212, 583
MlyI	GAGTC	2 cut(s)	866, 1003
MmeI	TCCRAC	3 cut(s)	436, 1213, 1430
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	6 cut(s)	449, 519, 693, 830, 1064, 1346
MslI	CAYNNNNRTG	2 cut(s)	383, 778
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	2 cut(s)	202, 991
MspR9I	CCNGG	2 cut(s)	203, 992
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	1 cut(s)	1041
MwoI	GCNNNNNNNGC	5 cut(s)	298, 381, 443, 470, 503
NciI	CCSGG	2 cut(s)	203, 992
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	387, 979, 1384
NlaIII	CATG	8 cut(s)	226, 291, 416, 804, 814, 1084, 1219, 1277
NlaIV	GGNNCC	5 cut(s)	376, 699, 885, 940, 1374
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	3 cut(s)	814, 1084, 1277
PaeI	GCATGC	1 cut(s)	1084
PciI	ACATGT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	1041
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	591
PflMI	CCANNNNNTGG	2 cut(s)	288, 338
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	4 cut(s)	246, 423, 538, 1272
PleI	GAGTC	2 cut(s)	866, 1003
PpsI	GAGTC	2 cut(s)	866, 1003
PscI	ACATGT	1 cut(s)	810
PshAI	GACNNNNGTC	1 cut(s)	1240
PspN4I	GGNNCC	5 cut(s)	376, 699, 885, 940, 1374
PspPI	GGNCC	4 cut(s)	89, 626, 768, 884
PstNI	CAGNNNCTG	1 cut(s)	1457
RsaI	GTAC	5 cut(s)	200, 815, 957, 1374, 1423
RsaNI	GTAC	5 cut(s)	199, 814, 956, 1373, 1422
RseI	CAYNNNNRTG	2 cut(s)	383, 778
SapI	GCTCTTC	1 cut(s)	1007
SaqAI	TTAA	6 cut(s)	449, 519, 693, 830, 1064, 1346
SatI	GCNGC	4 cut(s)	245, 422, 537, 1271
Sau3AI	GATC	3 cut(s)	387, 979, 1384
Sau96I	GGNCC	4 cut(s)	89, 626, 768, 884
ScaI	AGTACT	1 cut(s)	957
SchI	GAGTC	2 cut(s)	866, 1003
ScrFI	CCNGG	2 cut(s)	203, 992
SduI	GDGCHC	2 cut(s)	212, 583
SfaNI	GCATC	5 cut(s)	105, 484, 739, 1038, 1137
SfcI	CTRYAG	2 cut(s)	474, 924
SinI	GGWCC	3 cut(s)	89, 768, 884
SmiMI	CAYNNNNRTG	2 cut(s)	383, 778
SmlI	CTYRAG	4 cut(s)	252, 562, 692, 1417
SmoI	CTYRAG	4 cut(s)	252, 562, 692, 1417
SphI	GCATGC	1 cut(s)	1084
SsiI	CCGC	1 cut(s)	36
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	3 cut(s)	368, 1040, 1377
StyD4I	CCNGG	2 cut(s)	201, 990
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	3 cut(s)	454, 515, 1062
TaiI	ACGT	2 cut(s)	792, 909
TaqI	TCGA	3 cut(s)	346, 1302, 1437
TatI	WGTACW	2 cut(s)	813, 955
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	6 cut(s)	449, 519, 693, 830, 1064, 1346
Tru9I	TTAA	6 cut(s)	449, 519, 693, 830, 1064, 1346
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	244, 421, 536, 1270
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	6 cut(s)	78, 239, 352, 429, 605, 1125
TspGWI	ACGGA	1 cut(s)	1306
TspRI	CASTG	1 cut(s)	607
Van91I	CCANNNNNTGG	2 cut(s)	288, 338
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	89, 768, 884
XapI	RAATTY	2 cut(s)	1066, 1439
XceI	RCATGY	3 cut(s)	814, 1084, 1277
XmiI	GTMKAC	1 cut(s)	866
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	3 cut(s)	368, 1040, 1377
ZrmI	AGTACT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.