Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008245

Physical Location & Seq

Genomic Coordinates Forward (+)

63331216 .. 63336641

Gene Structure 5426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGATGGTGGAGGAGGAAGAAGAACTCAAACCCTGCGGTGGAATTGATATTGCAGAAGAAAATGAAACGAAAAGAAGGAGGTGTTGTGATGGTCCAAGTCCAATCCAATGGTTCAGGATGCTGTGTAGGGAACTGCATTGGAGTTTTGTATTAGGGGTGGTTGTTGTTTATGGAATAAGTCAAGGATTTGGTGGAGCTATGTACCGGGTGGGCACAGAATATTACATGAAGGATGTTCAAAAGGTGCAGCCTTCTCAAGCTCAATTTTATCAAGGAATTACTTCTATTCCATGGCTTGTCAAGCCTCTCTGGGGTCTCCTCACCGATGTTCTTCCACTTTTTGGCTATCGAAGACGCCCTTATTTCATTCTAGCAGGTTCCATTGGCGTGATCGCTATGCTTGTGTTATCATTCCATGAAAAGCTGCACATTGCATTTGCCATCTTGGCATTAACAGTTGGAAGTGCTGGAGTAGCTGTAGCCGATGTCACCATAGATGCTTGTGTGGCACAGAACAGTATTAACCATCATTCACTTGCAGCCGATATGCAAAGCCTGTGTGCCTTGAGTTCCTCCATTGGGGCACTTTTTGGATTCTCTGTCAGTGGTATATTTGTTCATCTTATAGGCCCAAAGGGGGTATATGGCTTGTTGGCAATCCCATCTGGACTTGTATTTTTACTTGGAACTCTGCTTAAGGAACCTCATTCACCCAATTTCGCTTACACGCAGGTCAATCAGAAGTTTATTGATGCTGGTAAGTCTATGTGGACCACATTGAAATGCCCTGACGTATGGAGACCATGCTTATACATGTACTTATCACTTGCATTAAGCTTGAACATCCTTGACGGAATGTTCTACTGGTATACAGACTCAAAGGGGGGTCCATCTTTCTCTCAGGAGAACGTGGGATTTATATTCTCTATAGGCTCAGTTGGTTCCATTTTGGGGGCAGTACTCTATCAGTATGTCCTAAAGGATCATCCTTTCCGGGACTTGCTCTTCTGGACTCAGTTGGTTTATGGTTTATCAGGAATGCTAGATTTGATGCTGGTCTTGCGGTTAAATTTGAGATTTGGCATGCCTGATTACTTCTTTGTTGTGATTGATGAAAGTGTATCGCAAATGACTGGAAGGCTCAAATGGATGCCTCTTCTGGTGCTTAGCTCAAAGCTTTGCCCCCCAGGAATTGAAGGAACTTTTTTTGCGTTGCTGATGTCAATTGACAATGTTGGACTTCTATCGGCGACTTGGGGAGGAGGCTTCCTGCTGCATGTATTGAAGGTTACACGGACACAATTCGATAATCTTTGGCTTGCAATTCTGATTAGGAATGTGTTGAGATTAACTCCACTATGTCTGCTATTTTTGGTACCTGGAGTTGATCCCAATTCTTCCATCCTTCCAACTGAAATCTTGAGTACGAAAGAGGATATTGAATTTGATACTCCAGAAGCTGAGAACATTGAATTGGTTTCCCTTGTAAGCAGAGTTGATGGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

502

Amino Acids

55.7

Weight (kDa)

5.76

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	61 - 461	4.3e-118	BT1 family
MFS_1	PF07690	62 - 414	2.7e-13	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25040 AT5G25050
fragaria_vesca	FvH4_2g41231
malus_domestica	MD08G1053000.v1.1 MD08G1053100.v1.1
prunus_persica	Prupe.1G395900_v2.0.a1
pyrus_communis	pycom08g04420 pycom08g04430
rosa_chinensis	RchiOBHm_Chr6g0299271
rosa_laevigata	RLG00000011447
rosa_multiflora	Rmu_sc0001434.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168840
rosa_rugosa	Rorug06G0286700
rosa_samantha	Rh6AG398100 Rh6AG398200 Rh6BG406600 Rh6CG412700 Rh6DG399400
rosa_wichuraiana	Rw6G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	365, 721
Acc65I	GGTACC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1375
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	869
AciI	CCGC	2 cut(s)	36, 1063
AclWI	GGATC	2 cut(s)	990, 1382
AcsI	RAATTY	2 cut(s)	1069, 1442
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	5 cut(s)	203, 818, 960, 1377, 1426
AfiI	CCNNNNNNNGG	6 cut(s)	38, 311, 341, 579, 637, 951
AflII	CTTAAG	1 cut(s)	695
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	7 cut(s)	239, 781, 841, 1196, 1285, 1442, 1472
AjnI	CCWGG	2 cut(s)	1186, 1378
AjuI	GAANNNNNNNTTGG	2 cut(s)	1457, 1489
AluBI	AGCT	8 cut(s)	197, 260, 424, 476, 837, 1170, 1177, 1460
AluI	AGCT	8 cut(s)	197, 260, 424, 476, 837, 1170, 1177, 1460
Alw26I	GTCTC	2 cut(s)	320, 793
AlwI	GGATC	2 cut(s)	990, 1382
AlwNI	CAGNNNCTG	1 cut(s)	1460
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	4 cut(s)	247, 424, 539, 1273
ApoI	RAATTY	2 cut(s)	1069, 1442
Asp700I	GAANNNNTTC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	1375
AspS9I	GGNCC	4 cut(s)	92, 629, 771, 887
AsuC2I	CCSGG	2 cut(s)	206, 995
AsuHPI	GGTGA	3 cut(s)	313, 481, 702
AvaII	GGWCC	3 cut(s)	92, 771, 887
BaeGI	GKGCMC	2 cut(s)	215, 586
BanI	GGYRCC	1 cut(s)	1375
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	259, 411, 551, 1260
BccI	CCATC	7 cut(s)	83, 449, 534, 670, 898, 1409, 1493
BciT130I	CCWGG	2 cut(s)	1188, 1380
BcnI	CCSGG	2 cut(s)	206, 995
BcoDI	GTCTC	2 cut(s)	320, 793
BfaI	CTAG	2 cut(s)	371, 1043
BfmI	CTRYAG	2 cut(s)	477, 927
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	2 cut(s)	365, 721
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	4 cut(s)	248, 425, 540, 1274
BlpI	GCTNAGC	1 cut(s)	1166
BlsI	GCNGC	4 cut(s)	249, 426, 541, 1275
BmcAI	AGTACT	1 cut(s)	960
Bme1390I	CCNGG	4 cut(s)	206, 995, 1188, 1380
Bme18I	GGWCC	3 cut(s)	92, 771, 887
BmgT120I	GGNCC	4 cut(s)	92, 629, 771, 887
BmiI	GGNNCC	5 cut(s)	379, 702, 888, 943, 1377
BmrFI	CCNGG	4 cut(s)	206, 995, 1188, 1380
BmsI	GCATC	5 cut(s)	108, 487, 742, 1041, 1140
BpiI	GAAGAC	1 cut(s)	358
BplI	GAGNNNNNCTC	2 cut(s)	1336, 1368
BpmI	CTGGAG	3 cut(s)	489, 1401, 1437
Bpu1102I	GCTNAGC	1 cut(s)	1166
BpuEI	CTTGAG	3 cut(s)	240, 586, 1441
BpuMI	CCSGG	2 cut(s)	206, 995
BsaHI	GRCGYC	1 cut(s)	355
BsaI	GGTCTC	2 cut(s)	320, 793
BsaJI	CCNNGG	2 cut(s)	290, 1186
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 462, 492
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 311, 341, 579, 637, 951
Bse1I	ACTGG	2 cut(s)	869, 1138
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	1188, 1380
BseDI	CCNNGG	2 cut(s)	290, 1186
BseGI	GGATG	6 cut(s)	123, 238, 843, 985, 1155, 1401
BseLI	CCNNNNNNNGG	6 cut(s)	38, 311, 341, 579, 637, 951
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	914, 948, 1028, 1452
BseNI	ACTGG	2 cut(s)	869, 1138
BseRI	GAGGAG	3 cut(s)	26, 308, 1275
BseSI	GKGCMC	2 cut(s)	215, 586
BseXI	GCAGC	4 cut(s)	259, 411, 551, 1260
BsgI	GTGCAG	2 cut(s)	266, 410
BshFI	GGCC	1 cut(s)	630
BshNI	GGYRCC	1 cut(s)	1375
BsiSI	CCGG	2 cut(s)	205, 994
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	6 cut(s)	38, 311, 341, 579, 637, 951
BsmAI	GTCTC	2 cut(s)	320, 793
BsmFI	GGGAC	1 cut(s)	1010
BsmI	GAATGC	1 cut(s)	1044
BsnI	GGCC	1 cut(s)	630
Bso31I	GGTCTC	2 cut(s)	320, 793
Bsp1286I	GDGCHC	2 cut(s)	215, 586
Bsp143I	GATC	3 cut(s)	390, 982, 1387
Bsp1720I	GCTNAGC	1 cut(s)	1166
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	2 cut(s)	36, 1063
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	4 cut(s)	913, 947, 1027, 1453
BspLI	GGNNCC	5 cut(s)	379, 702, 888, 943, 1377
BspMI	ACCTGC	2 cut(s)	365, 721
BspPI	GGATC	2 cut(s)	990, 1382
BspQI	GCTCTTC	1 cut(s)	1010
BspT107I	GGYRCC	1 cut(s)	1375
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	2 cut(s)	320, 793
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	869, 1138
BssECI	CCNNGG	2 cut(s)	290, 1186
BssMI	GATC	3 cut(s)	390, 982, 1387
BssNAI	GTATAC	1 cut(s)	870
BssNI	GRCGYC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	290
Bst1107I	GTATAC	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	1188, 1380
Bst4CI	ACNGT	2 cut(s)	457, 518
Bst6I	CTCTTC	2 cut(s)	1010, 1161
BstACI	GRCGYC	1 cut(s)	355
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	1085, 1320
BstDEI	CTNAG	5 cut(s)	900, 934, 1014, 1166, 1461
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	6 cut(s)	123, 238, 843, 985, 1155, 1401
BstKTI	GATC	3 cut(s)	393, 985, 1390
BstMAI	GTCTC	2 cut(s)	320, 793
BstMBI	GATC	3 cut(s)	390, 982, 1387
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 446, 473, 506, 1060
BstNI	CCWGG	2 cut(s)	1188, 1380
BstNSI	RCATGY	3 cut(s)	817, 1087, 1280
BstSCI	CCNGG	4 cut(s)	204, 993, 1186, 1378
BstSFI	CTRYAG	2 cut(s)	477, 927
BstSLI	GKGCMC	2 cut(s)	215, 586
BstV1I	GCAGC	4 cut(s)	259, 411, 551, 1260
BstV2I	GAAGAC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstZ17I	GTATAC	1 cut(s)	870
BsuRI	GGCC	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	6 cut(s)	123, 238, 843, 985, 1155, 1401
BtsIMutI	CAGTG	1 cut(s)	610
BveI	ACCTGC	2 cut(s)	365, 721
Cac8I	GCNNGC	2 cut(s)	1085, 1320
CaiI	CAGNNNCTG	1 cut(s)	1460
Cfr13I	GGNCC	4 cut(s)	92, 629, 771, 887
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	5 cut(s)	202, 817, 959, 1376, 1425
CviAII	CATG	7 cut(s)	226, 291, 416, 804, 814, 1084, 1277
CviQI	GTAC	5 cut(s)	202, 817, 959, 1376, 1425
DdeI	CTNAG	5 cut(s)	900, 934, 1014, 1166, 1461
DpnI	GATC	3 cut(s)	392, 984, 1389
DpnII	GATC	3 cut(s)	390, 982, 1387
Eam1104I	CTCTTC	2 cut(s)	1010, 1161
EarI	CTCTTC	2 cut(s)	1010, 1161
Eco130I	CCWWGG	1 cut(s)	290
Eco31I	GGTCTC	2 cut(s)	320, 793
Eco47I	GGWCC	3 cut(s)	92, 771, 887
EcoRII	CCWGG	2 cut(s)	1186, 1378
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	7 cut(s)	229, 294, 419, 807, 817, 1087, 1280
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	7 cut(s)	225, 290, 415, 803, 813, 1083, 1276
FblI	GTMKAC	1 cut(s)	869
Fnu4HI	GCNGC	4 cut(s)	248, 425, 540, 1274
FokI	GGATG	6 cut(s)	130, 245, 830, 972, 1162, 1388
Fsp4HI	GCNGC	4 cut(s)	248, 425, 540, 1274
FspBI	CTAG	2 cut(s)	371, 1043
GluI	GCNGC	4 cut(s)	248, 425, 540, 1274
GsuI	CTGGAG	3 cut(s)	489, 1401, 1437
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	2 cut(s)	205, 994
HgaI	GACGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	7 cut(s)	229, 294, 419, 807, 817, 1087, 1280
HindIII	AAGCTT	2 cut(s)	835, 1175
HinfI	GANTC	3 cut(s)	594, 875, 1012
HpaII	CCGG	2 cut(s)	205, 994
HphI	GGTGA	3 cut(s)	313, 481, 702
Hpy166II	GTNNAC	2 cut(s)	771, 870
Hpy188I	TCNGA	2 cut(s)	741, 1329
Hpy188III	TCNNGA	7 cut(s)	115, 666, 902, 1009, 1035, 1420, 1454
Hpy8I	GTNNAC	2 cut(s)	771, 870
HpyAV	CCTTC	7 cut(s)	69, 223, 261, 1131, 1190, 1279, 1415
HpyCH4III	ACNGT	2 cut(s)	457, 518
HpyCH4IV	ACGT	2 cut(s)	792, 909
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 446, 473, 506, 1060
HpyF3I	CTNAG	5 cut(s)	900, 934, 1014, 1166, 1461
HpySE526I	ACGT	2 cut(s)	792, 909
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	7 cut(s)	229, 294, 419, 807, 817, 1087, 1280
KpnI	GGTACC	1 cut(s)	1379
Kzo9I	GATC	3 cut(s)	390, 982, 1387
LguI	GCTCTTC	1 cut(s)	1010
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	259, 411, 551, 1260
LweI	GCATC	5 cut(s)	108, 487, 742, 1041, 1140
MaeI	CTAG	2 cut(s)	371, 1043
MaeII	ACGT	2 cut(s)	792, 909
MaeIII	GTNAC	2 cut(s)	487, 1288
MalI	GATC	3 cut(s)	392, 984, 1389
MboI	GATC	3 cut(s)	390, 982, 1387
MboII	GAAGA	8 cut(s)	29, 32, 68, 323, 363, 997, 1148, 1389
MfeI	CAATTG	1 cut(s)	1224
MhlI	GDGCHC	2 cut(s)	215, 586
MlyI	GAGTC	2 cut(s)	869, 1006
MmeI	TCCRAC	3 cut(s)	439, 1216, 1433
MroXI	GAANNNNTTC	1 cut(s)	280
MseI	TTAA	6 cut(s)	452, 522, 696, 833, 1067, 1349
MslI	CAYNNNNRTG	2 cut(s)	386, 781
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	205, 994
MspR9I	CCNGG	4 cut(s)	206, 995, 1188, 1380
MunI	CAATTG	1 cut(s)	1224
Mva1269I	GAATGC	1 cut(s)	1044
MvaI	CCWGG	2 cut(s)	1188, 1380
MwoI	GCNNNNNNNGC	5 cut(s)	301, 446, 473, 506, 1060
NciI	CCSGG	2 cut(s)	206, 995
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	390, 982, 1387
NlaIII	CATG	7 cut(s)	229, 294, 419, 807, 817, 1087, 1280
NlaIV	GGNNCC	5 cut(s)	379, 702, 888, 943, 1377
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	3 cut(s)	817, 1087, 1280
PaeI	GCATGC	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	1010
PctI	GAATGC	1 cut(s)	1044
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	594
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	993
PkrI	GCNGC	4 cut(s)	249, 426, 541, 1275
PleI	GAGTC	2 cut(s)	869, 1006
PpsI	GAGTC	2 cut(s)	869, 1006
PscI	ACATGT	1 cut(s)	813
Psp6I	CCWGG	2 cut(s)	1186, 1378
PspGI	CCWGG	2 cut(s)	1186, 1378
PspN4I	GGNNCC	5 cut(s)	379, 702, 888, 943, 1377
PspPI	GGNCC	4 cut(s)	92, 629, 771, 887
PstNI	CAGNNNCTG	1 cut(s)	1460
RsaI	GTAC	5 cut(s)	203, 818, 960, 1377, 1426
RsaNI	GTAC	5 cut(s)	202, 817, 959, 1376, 1425
RseI	CAYNNNNRTG	2 cut(s)	386, 781
SapI	GCTCTTC	1 cut(s)	1010
SaqAI	TTAA	6 cut(s)	452, 522, 696, 833, 1067, 1349
SatI	GCNGC	4 cut(s)	248, 425, 540, 1274
Sau3AI	GATC	3 cut(s)	390, 982, 1387
Sau96I	GGNCC	4 cut(s)	92, 629, 771, 887
ScaI	AGTACT	1 cut(s)	960
SchI	GAGTC	2 cut(s)	869, 1006
ScrFI	CCNGG	4 cut(s)	206, 995, 1188, 1380
SduI	GDGCHC	2 cut(s)	215, 586
SfaNI	GCATC	5 cut(s)	108, 487, 742, 1041, 1140
SfcI	CTRYAG	2 cut(s)	477, 927
SinI	GGWCC	3 cut(s)	92, 771, 887
SmiMI	CAYNNNNRTG	2 cut(s)	386, 781
SmlI	CTYRAG	4 cut(s)	255, 565, 695, 1420
SmoI	CTYRAG	4 cut(s)	255, 565, 695, 1420
SphI	GCATGC	1 cut(s)	1087
SsiI	CCGC	2 cut(s)	36, 1063
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	371, 1043
StyD4I	CCNGG	4 cut(s)	204, 993, 1186, 1378
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	457, 518
TaiI	ACGT	2 cut(s)	795, 912
TaqI	TCGA	2 cut(s)	349, 1305
TatI	WGTACW	2 cut(s)	816, 958
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	6 cut(s)	452, 522, 696, 833, 1067, 1349
Tru9I	TTAA	6 cut(s)	452, 522, 696, 833, 1067, 1349
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	4 cut(s)	247, 424, 539, 1273
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	6 cut(s)	78, 242, 355, 432, 608, 1128
TspGWI	ACGGA	2 cut(s)	867, 1309
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	3 cut(s)	92, 771, 887
XapI	RAATTY	2 cut(s)	1069, 1442
XceI	RCATGY	3 cut(s)	817, 1087, 1280
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	371, 1043
ZrmI	AGTACT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.