pycom08g06370

xyloglucan glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014524
Physical Location & Seq
Forward (+)
4948994 .. 4949987
994 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06370.1

Sequence Viewer

Length: 891 bp
ATGGCGCCCTCTTTCAGCTGGTGGAATAATACTAAAGACACCCACCGCGGCACACCCGTCGTCATCAAGATGGAGAACCCCAACTGGTCCATGGTCGAGCTCGAAGGCCCCTCCGACGAGGACTTCCTCATCTCCGAGTCGCCGGGGCGTGTCCGTGGCAAAAACGCCAAGCAGTTCACTTGGGTCCTCCTCCTCAAAGCCCACAGAGCCGCGGGCTGCCTCACCTCCATCGGCTCCGCAATGCTGGGCCTCGCATCGGCAATCCGCCGTCGCGTCGCCTCCGGCCGGATGGACACCGACGCCGACGTCGAGCCCCACGGCGTCAGGGAAGTCGAGAACCCGGCCGTCCGCAGCCGGTTCTATTTCTGTATCAAGATGTTCCTGTGTCTGTCGGTTCTTCTTCTGGGTTTTGAGGTGGCGGCGTATTTCAAAGGCTGGCACTTTGGGCCGGCGCATCTGCAGCTGGAGTACTTGTGGGCGTCGCCATTTGGGGTTAAGGGCGCGTTTGATTGGGTTTATTCGAAATGGGTTTTGTTCCGGGTGGAGTATTTAGCTCCGCCGCTACAGTTCCTGGCCAGTTCCTGCATTGTTCTTTTCATGATTCAGAGCTTGGATAGGCTAATCCTCTGCCTGGGTTGCTTCTGGATCCGGTTCAAGAAGATCAAACCGGTCCCGAAGGAAGGCTCTTTCGACCCCGAAACAGGGGAAACCGGTTACTTCCCCATGGTTCTTGTTCAGATTCCCATGTGCAATGAAAAGGAGGTTTATCAGACGTCAATTGCTGCAGTGTGCAATCTGGACTGGCCGAAATCGAAGATGTTGATTCAAATTCTCGACGATTCGGATGATCCAACGACGCAGTTTCCGATCGATCAAGGAGGAAGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

297

Amino Acids

33.43

Weight (kDa)

6.53

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G07960 AT4G07960
fragaria_vesca FvH4_2g32570
malus_domestica MD08G1076900.v1.1 MD15G1064400.v1.1
prunus_persica Prupe.1G418400_v2.0.a1
pyrus_communis pycom08g06370 pycom15g06110
rosa_chinensis RchiOBHm_Chr6g0310111
rosa_laevigata RLG00000010510
rosa_multiflora Rmu_sc0000294.1_g000027
rosa_roxburghii Rroxscaffold_7G00158860
rosa_rugosa Rorug06G0377600
rosa_samantha Rh6BG500800 Rh6CG505900 Rh6DG491800
rosa_wichuraiana Rw6G042760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AatII GACGTC 2 cut(s) 309, 776
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 4 cut(s) 48, 212, 273, 503
AclWI GGATC 3 cut(s) 640, 653, 842
AcoI YGGCCR 4 cut(s) 283, 342, 573, 803
AcsI RAATTY 1 cut(s) 828
AcyI GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 6 cut(s) 256, 285, 631, 680, 701, 702
AgeI ACCGGT 2 cut(s) 667, 710
AgsI TTSAA 3 cut(s) 430, 655, 827
AjnI CCWGG 2 cut(s) 570, 630
AluBI AGCT 5 cut(s) 18, 100, 463, 554, 609
AluI AGCT 5 cut(s) 18, 100, 463, 554, 609
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 3 cut(s) 640, 653, 842
AlwNI CAGNNNCTG 2 cut(s) 571, 582
AoxI GGCC 7 cut(s) 106, 247, 283, 342, 446, 573, 803
ApeKI GCWGC 4 cut(s) 216, 351, 460, 782
ApoI RAATTY 1 cut(s) 828
AsiGI ACCGGT 2 cut(s) 667, 710
AspLEI GCGC 3 cut(s) 7, 454, 503
AspS9I GGNCC 6 cut(s) 87, 107, 184, 247, 446, 670
AsuC2I CCSGG 3 cut(s) 144, 341, 539
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 521
AvaII GGWCC 3 cut(s) 87, 184, 670
BalI TGGCCA 1 cut(s) 575
BamHI GGATCC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 102, 315
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 203, 363, 472, 769
BccI CCATC 3 cut(s) 64, 236, 283
BceAI ACGGC 3 cut(s) 252, 329, 334
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 2 cut(s) 572, 632
BcnI CCSGG 3 cut(s) 144, 341, 539
BfmI CTRYAG 3 cut(s) 458, 563, 783
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 8 cut(s) 49, 210, 217, 352, 420, 461, 560, 783
BlsI GCNGC 8 cut(s) 50, 211, 218, 353, 421, 462, 561, 784
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 5 cut(s) 144, 341, 539, 572, 632
Bme18I GGWCC 3 cut(s) 87, 184, 670
BmgT120I GGNCC 6 cut(s) 87, 107, 184, 247, 446, 670
BmiI GGNNCC 6 cut(s) 6, 109, 185, 235, 647, 672
BmrFI CCNGG 5 cut(s) 144, 341, 539, 572, 632
BmsI GCATC 2 cut(s) 263, 463
BpmI CTGGAG 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 521
BpuMI CCSGG 3 cut(s) 144, 341, 539
Bsa29I ATCGAT 1 cut(s) 870
BsaHI GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
BsaJI CCNNGG 8 cut(s) 46, 90, 143, 154, 210, 316, 631, 723
BsaWI WCCGGW 3 cut(s) 648, 667, 710
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 6 cut(s) 256, 285, 631, 680, 701, 702
Bse118I RCCGGY 4 cut(s) 354, 448, 667, 710
Bse1I ACTGG 3 cut(s) 89, 576, 806
Bse3DI GCAATG 2 cut(s) 246, 757
BseBI CCWGG 2 cut(s) 572, 632
BseCI ATCGAT 1 cut(s) 870
BseDI CCNNGG 8 cut(s) 46, 90, 143, 154, 210, 316, 631, 723
BseGI GGATG 2 cut(s) 294, 850
BseLI CCNNNNNNNGG 6 cut(s) 256, 285, 631, 680, 701, 702
BseMI GCAATG 2 cut(s) 246, 757
BseNI ACTGG 3 cut(s) 89, 576, 806
BseRI GAGGAG 2 cut(s) 179, 182
BseX3I CGGCCG 2 cut(s) 283, 342
BseXI GCAGC 4 cut(s) 203, 363, 472, 769
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 4 cut(s) 48, 212, 273, 503
Bsh1285I CGRYCG 3 cut(s) 286, 345, 870
BshFI GGCC 7 cut(s) 108, 249, 285, 344, 448, 575, 805
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 2 cut(s) 667, 710
BshVI ATCGAT 1 cut(s) 870
BsiEI CGRYCG 3 cut(s) 286, 345, 870
BsiHKAI GWGCWC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 6 cut(s) 256, 285, 631, 680, 701, 702
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 7 cut(s) 108, 249, 285, 344, 448, 575, 805
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 102, 315
Bsp143I GATC 5 cut(s) 645, 660, 847, 867, 871
Bsp19I CCATGG 2 cut(s) 90, 723
BspANI GGCC 7 cut(s) 108, 249, 285, 344, 448, 575, 805
BspDI ATCGAT 1 cut(s) 870
BspFNI CGCG 4 cut(s) 48, 212, 273, 503
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 6 cut(s) 6, 109, 185, 235, 647, 672
BspMAI CTGCAG 2 cut(s) 462, 787
BspPI GGATC 3 cut(s) 640, 653, 842
BspT104I TTCGAA 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 246, 757
BsrFI RCCGGY 4 cut(s) 354, 448, 667, 710
BsrI ACTGG 3 cut(s) 89, 576, 806
BssAI RCCGGY 4 cut(s) 354, 448, 667, 710
BssECI CCNNGG 8 cut(s) 46, 90, 143, 154, 210, 316, 631, 723
BssMI GATC 5 cut(s) 645, 660, 847, 867, 871
BssNI GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
BssT1I CCWWGG 2 cut(s) 90, 723
Bst2UI CCWGG 2 cut(s) 572, 632
Bst4CI ACNGT 1 cut(s) 567
BstACI GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 214, 437, 450
BstDSI CCRYGG 6 cut(s) 46, 90, 154, 210, 316, 723
BstF5I GGATG 2 cut(s) 294, 850
BstFNI CGCG 4 cut(s) 48, 212, 273, 503
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 454, 503
BstKTI GATC 5 cut(s) 648, 663, 850, 870, 874
BstMBI GATC 5 cut(s) 645, 660, 847, 867, 871
BstMCI CGRYCG 3 cut(s) 286, 345, 870
BstMWI GCNNNNNNNGC 4 cut(s) 206, 445, 460, 636
BstNI CCWGG 2 cut(s) 572, 632
BstSCI CCNGG 5 cut(s) 142, 339, 537, 570, 630
BstSFI CTRYAG 3 cut(s) 458, 563, 783
BstUI CGCG 4 cut(s) 48, 212, 273, 503
BstV1I GCAGC 4 cut(s) 203, 363, 472, 769
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BstZI CGGCCG 2 cut(s) 283, 342
Bsu15I ATCGAT 1 cut(s) 870
BsuRI GGCC 7 cut(s) 108, 249, 285, 344, 448, 575, 805
BsuTUI ATCGAT 1 cut(s) 870
BtgI CCRYGG 6 cut(s) 46, 90, 154, 210, 316, 723
BtsCI GGATG 2 cut(s) 294, 850
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 3 cut(s) 214, 437, 450
CaiI CAGNNNCTG 2 cut(s) 571, 582
CciI TCATGA 1 cut(s) 597
CfoI GCGC 3 cut(s) 7, 454, 503
Cfr10I RCCGGY 4 cut(s) 354, 448, 667, 710
Cfr13I GGNCC 6 cut(s) 87, 107, 184, 247, 446, 670
Cfr42I CCGCGG 2 cut(s) 49, 213
ClaI ATCGAT 1 cut(s) 870
CseI GACGC 5 cut(s) 262, 308, 310, 468, 865
Csp6I GTAC 1 cut(s) 469
CspAI ACCGGT 2 cut(s) 667, 710
CviAII CATG 4 cut(s) 91, 598, 724, 745
CviQI GTAC 1 cut(s) 469
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 647, 662, 849, 869, 873
DpnII GATC 5 cut(s) 645, 660, 847, 867, 871
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 4 cut(s) 283, 342, 573, 803
EagI CGGCCG 2 cut(s) 283, 342
EciI GGCGGA 2 cut(s) 254, 546
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 2 cut(s) 283, 342
Eco130I CCWWGG 2 cut(s) 90, 723
Eco24I GRGCYC 2 cut(s) 102, 315
Eco47I GGWCC 3 cut(s) 87, 184, 670
Eco52I CGGCCG 2 cut(s) 283, 342
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 2 cut(s) 107, 184
EcoRII CCWGG 2 cut(s) 570, 630
EcoT14I CCWWGG 2 cut(s) 90, 723
EcoT38I GRGCYC 2 cut(s) 102, 315
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 90, 723
FaeI CATG 4 cut(s) 94, 601, 727, 748
FaiI YATR 5 cut(s) 92, 599, 725, 746, 889
FaqI GGGAC 1 cut(s) 656
FatI CATG 4 cut(s) 90, 597, 723, 744
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 8 cut(s) 49, 210, 217, 352, 420, 461, 560, 783
FokI GGATG 2 cut(s) 301, 857
FriOI GRGCYC 2 cut(s) 102, 315
Fsp4HI GCNGC 8 cut(s) 49, 210, 217, 352, 420, 461, 560, 783
GlaI GCGC 3 cut(s) 6, 453, 502
GluI GCNGC 8 cut(s) 49, 210, 217, 352, 420, 461, 560, 783
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 485
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 7 cut(s) 108, 249, 285, 344, 448, 575, 805
HgaI GACGC 5 cut(s) 262, 308, 310, 468, 865
HhaI GCGC 3 cut(s) 7, 454, 503
Hin1I GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
Hin1II CATG 4 cut(s) 94, 601, 727, 748
Hin6I GCGC 3 cut(s) 5, 452, 501
HinP1I GCGC 3 cut(s) 5, 452, 501
HinfI GANTC 5 cut(s) 137, 601, 739, 823, 839
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 7 cut(s) 115, 136, 606, 738, 771, 844, 867
Hpy188III TCNNGA 9 cut(s) 67, 334, 373, 598, 643, 655, 673, 797, 833
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 98, 670, 674
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4IV ACGT 2 cut(s) 306, 773
HpyCH4V TGCA 5 cut(s) 460, 585, 750, 785, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 445, 460, 636
HpySE526I ACGT 2 cut(s) 306, 773
Hsp92I GRCGYC 6 cut(s) 5, 300, 306, 321, 479, 773
Hsp92II CATG 4 cut(s) 94, 601, 727, 748
HspAI GCGC 3 cut(s) 5, 452, 501
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
KspI CCGCGG 2 cut(s) 49, 213
Kzo9I GATC 5 cut(s) 645, 660, 847, 867, 871
LmnI GCTCC 2 cut(s) 239, 559
Lsp1109I GCAGC 4 cut(s) 203, 363, 472, 769
LweI GCATC 2 cut(s) 263, 463
MaeII ACGT 2 cut(s) 306, 773
MaeIII GTNAC 1 cut(s) 713
MalI GATC 5 cut(s) 647, 662, 849, 869, 873
MboI GATC 5 cut(s) 645, 660, 847, 867, 871
MboII GAAGA 4 cut(s) 389, 392, 670, 826
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 102, 315
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 2 cut(s) 777, 828
MluNI TGGCCA 1 cut(s) 575
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 138, 875
Mox20I TGGCCA 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 448
MscI TGGCCA 1 cut(s) 575
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 575
MspA1I CMGCKG 4 cut(s) 18, 48, 212, 463
MspR9I CCNGG 5 cut(s) 144, 341, 539, 572, 632
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 2 cut(s) 572, 632
MvnI CGCG 4 cut(s) 48, 212, 273, 503
MwoI GCNNNNNNNGC 4 cut(s) 206, 445, 460, 636
NaeI GCCGGC 1 cut(s) 450
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 3 cut(s) 144, 341, 539
NcoI CCATGG 2 cut(s) 90, 723
NdeII GATC 5 cut(s) 645, 660, 847, 867, 871
NgoMIV GCCGGC 1 cut(s) 448
NlaIII CATG 4 cut(s) 94, 601, 727, 748
NlaIV GGNNCC 6 cut(s) 6, 109, 185, 235, 647, 672
NspV TTCGAA 1 cut(s) 521
PagI TCATGA 1 cut(s) 597
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 863
PdiI GCCGGC 1 cut(s) 450
PfeI GAWTC 4 cut(s) 601, 739, 823, 839
PinAI ACCGGT 2 cut(s) 667, 710
PkrI GCNGC 8 cut(s) 50, 211, 218, 353, 421, 462, 561, 784
Ple19I CGATCG 1 cut(s) 870
PleI GAGTC 1 cut(s) 145
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 570, 630
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 2 cut(s) 570, 630
PspN4I GGNNCC 6 cut(s) 6, 109, 185, 235, 647, 672
PspPI GGNCC 6 cut(s) 87, 107, 184, 247, 446, 670
PspPPI RGGWCCY 1 cut(s) 184
PstI CTGCAG 2 cut(s) 462, 787
PstNI CAGNNNCTG 2 cut(s) 571, 582
PsuI RGATCY 1 cut(s) 645
PvuI CGATCG 1 cut(s) 870
PvuII CAGCTG 2 cut(s) 18, 463
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 2 cut(s) 49, 213
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 8 cut(s) 49, 210, 217, 352, 420, 461, 560, 783
Sau3AI GATC 5 cut(s) 645, 660, 847, 867, 871
Sau96I GGNCC 6 cut(s) 87, 107, 184, 247, 446, 670
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 5 cut(s) 144, 341, 539, 572, 632
SduI GDGCHC 2 cut(s) 102, 315
SfaNI GCATC 2 cut(s) 263, 463
SfcI CTRYAG 3 cut(s) 458, 563, 783
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 2 cut(s) 49, 213
SfuI TTCGAA 1 cut(s) 521
SgrBI CCGCGG 2 cut(s) 49, 213
SinI GGWCC 3 cut(s) 87, 184, 670
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 777, 828
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 5 cut(s) 142, 339, 537, 570, 630
StyI CCWWGG 2 cut(s) 90, 723
TaaI ACNGT 1 cut(s) 567
TaiI ACGT 2 cut(s) 309, 776
TaqI TCGA 9 cut(s) 96, 102, 309, 333, 521, 690, 812, 834, 870
TasI AATT 2 cut(s) 777, 828
TatI WGTACW 1 cut(s) 468
TauI GCSGC 4 cut(s) 51, 212, 422, 562
TfiI GAWTC 4 cut(s) 601, 739, 823, 839
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 792
TseI GCWGC 4 cut(s) 216, 351, 460, 782
TspDTI ATGAA 2 cut(s) 586, 768
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 792
VpaK11BI GGWCC 3 cut(s) 87, 184, 670
XapI RAATTY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
ZraI GACGTC 2 cut(s) 307, 774
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.