Rroxscaffold_7G00158860

xyloglucan glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014524
Physical Location & Seq
Forward (+)
2185304 .. 2188669
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158860.1

Sequence Viewer

Length: 1881 bp
ATGGCGCCGTCTTGGTGGTCGAAAGAGGACAGCCACCGAGGGACGCCGGTGGTGGTGAAGATGGAGAACCCGAACTGGTCCATGGTGGAGCTGGAGGGTCCGACCGACGAGGACTTCCTAATGGCGGATTCCCCGAGCCGAGCCCGAGACAAAGGCCGAGGCAAAAACGCCAAGCAGTTCACTTGGGTCCTCCTCCTCAAGGCCCACCGCGCCGCCGGCTGCCTCACCTCCCTGGGCTCGGCAATGTTGGGCCTGGCCTCCGCCATACGACGCCGCGTCGCATCCGGAAGGACAGACACCGACGCCGACAGCGAGCCACGCGGCGGCGGCGGCAGAGGGTCAAGATTCTATTTCTGCATCAAGCTGTTTCTGTTGCTCTCTCTGGTTCTGCTGGGGTTTGAGGTCGCCGCGTATTTTAAAGGGTGGCACTTTGGAGCTCCACACCTGCAGCTTCACTACTTGTGGGAGATGGAGTTTGATGGGGTTAAGGGGGCTTTCGATTGGGTCTATTCCAAATGGGTTTTGATTCGGGTCGAGTATCTCGCTCCGCCGCTTCAGTTTTTGGCCAATGCCTGTATTGTGCTCTTCATGGTTCAGAGCTTGGATAGGTTGATTCTGTGCCTGGGGTGTTTCTGGATCCGGTTCAAGAAGATTAAGCCGGTTCCGAAAGGCGGTCCTTTGGATCTTGAATCCTCTGAGAATGGCTACTTCCCTATGGTTCTAGTTCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAGTCCATTGGTGCTGTGTGCAATTTAGACTGGCCCAAGTCGAGGTTGTTGGTTCAAGTTCTTGACGATTCGGATGACCCGACTACGCAGTTTATGATCAAAGAGGAGGTCCAGAAATGGCAGAAGGAAGGGGCCAACATTTTGTATCGGCACAGAGTGATTAGAGATGGATACAAGGCTGGCAATCTCAAGTCTGCAATGAATTGTAGCTATGTCAAAGACTACGAGTTTGTTGCCATTTTCGACGCTGATTTTCAGCCCGCTCCCGATTTCCTCAAGAGAACAGTCCCACACTTCCAGGACAATGAAGAACTGGCGCTGGTGCAAGCTAGGTGGTCCTTTGTGAACAGGGATGAGAACCTACTCACAAGGTTGCAGAACATTAATTTGACATTCCACTTTGAAGTCGAACAACAAGTAAATAGTGTGTTCATTAATTTCTTTGGGTTCAACGGGACAGCTGGTGTGTGGAGGATAAAGGCTCTCGAGGACTCTGGTGGGTGGTTGGAGAGGACCACTGTCGAGGACATGGATATTGCTGTCCGTGCTCATCTTCATGGCTGGAAATTCATCTTCCTCAATGATGTTGAGTGCCAGTGCGAAGTACCTGAATCTTACGAAGCTTACCGGAAACAACAACACAGATGGCACTCGGGACCCATGCAGTTGTTTCGCCTATGTTTACCCGATATCATCAAATCCAAGATCAGCATTTGGAAGAAATTCAATTTGATTTTCCTCTTCTTTCTGCTCAGAAAGTTGATATTGCCCTTCTATTCTTTCACCCTATTTTGCATAATTCTTCCCATGACAATGTTCATCCCCGAAGCTGAGCTCCCAGCATGGGTTGTGTGCTACATCCCTGCAACAATGTCATTCCTCAATATCCTCCCGGCCCCAAAAGCCTTCCCTTTCATTGTTCCTTACCTTCTCTTTGAAAACACCATGTCAGTGACCAAGTTCAATGCTATGATATCCGGCCTATTCCAGCTCGGGAGTGCATACGAGTGGGTGGTTACCAAGAAGTCTGGGCGTTCCTCAGAGGGTGATCTTGTCTCCTTAGTCGAGAAAGAGCCAAAGCATCAGAGGGGGTCTCAGTTCCAGACCTTGCCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

626

Amino Acids

71.92

Weight (kDa)

8.11

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 238 - 471 1.6e-15 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 243 - 380 5e-12 Glycosyl transferase family 2
Glyco_transf_21 PF13506 327 - 471 1.4e-07 Glycosyl transferase family 21
Glyco_trans_2_3 PF13632 332 - 538 4.2e-22 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G07960 AT4G07960
fragaria_vesca FvH4_2g32570
malus_domestica MD08G1076900.v1.1 MD15G1064400.v1.1
prunus_persica Prupe.1G418400_v2.0.a1
pyrus_communis pycom08g06370 pycom15g06110
rosa_chinensis RchiOBHm_Chr6g0310111
rosa_laevigata RLG00000010510
rosa_multiflora Rmu_sc0000294.1_g000027
rosa_roxburghii Rroxscaffold_7G00158860
rosa_rugosa Rorug06G0377600
rosa_samantha Rh6BG500800 Rh6CG505900 Rh6DG491800
rosa_wichuraiana Rw6G042760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 453
Acc36I ACCTGC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 1025
AccII CGCG 4 cut(s) 210, 276, 321, 410
AccIII TCCGGA 1 cut(s) 284
AclWI GGATC 4 cut(s) 631, 644, 690, 724
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 2 cut(s) 1328, 1484
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 4 cut(s) 5, 44, 271, 303
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 1 cut(s) 1368
AfiI CCNNNNNNNGG 7 cut(s) 124, 199, 238, 323, 671, 804, 1606
AgsI TTSAA 8 cut(s) 646, 689, 818, 1166, 1213, 1489, 1700, 1726
AhdI GACNNNNNGTC 1 cut(s) 275
AjnI CCWGG 4 cut(s) 231, 252, 621, 1059
Alw21I GWGCWC 4 cut(s) 439, 585, 1312, 1599
Alw26I GTCTC 3 cut(s) 141, 1822, 1860
AlwI GGATC 4 cut(s) 631, 644, 690, 724
Ama87I CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
Aor13HI TCCGGA 1 cut(s) 284
AoxI GGCC 9 cut(s) 154, 201, 250, 255, 564, 794, 894, 1656, 1741
ApeKI GCWGC 2 cut(s) 219, 448
ApoI RAATTY 2 cut(s) 1328, 1484
ArsI GACNNNNNNTTYG 4 cut(s) 855, 887, 974, 1006
AseI ATTAAT 2 cut(s) 1146, 1197
Asp700I GAANNNNTTC 1 cut(s) 1484
AspLEI GCGC 3 cut(s) 7, 212, 1081
AsuC2I CCSGG 1 cut(s) 1655
AsuHPI GGTGA 4 cut(s) 67, 217, 1537, 1820
AvaI CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
AvaII GGWCC 8 cut(s) 78, 98, 187, 674, 871, 1098, 1275, 1418
BalI TGGCCA 1 cut(s) 566
BamHI GGATCC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 4 cut(s) 145, 239, 439, 1599
Bbv12I GWGCWC 4 cut(s) 439, 585, 1312, 1599
BbvI GCAGC 2 cut(s) 206, 460
BccI CCATC 5 cut(s) 55, 463, 473, 923, 1401
BcgI CGANNNNNNTGC 4 cut(s) 977, 1011, 1415, 1449
BciT130I CCWGG 4 cut(s) 233, 254, 623, 1061
BciVI GTATCC 1 cut(s) 926
BclI TGATCA 1 cut(s) 858
BcnI CCSGG 1 cut(s) 1655
BcoDI GTCTC 3 cut(s) 141, 1822, 1860
BfaI CTAG 2 cut(s) 722, 1092
BfmI CTRYAG 1 cut(s) 446
BfoI RGCGCY 2 cut(s) 8, 1082
BfuAI ACCTGC 1 cut(s) 453
BfuI GTATCC 1 cut(s) 926
BlpI GCTNAGC 1 cut(s) 1593
Bme1390I CCNGG 5 cut(s) 233, 254, 623, 1061, 1655
Bme18I GGWCC 8 cut(s) 78, 98, 187, 674, 871, 1098, 1275, 1418
BmeRI GACNNNNNGTC 1 cut(s) 275
BmeT110I CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
BmiI GGNNCC 9 cut(s) 6, 99, 188, 638, 663, 895, 1419, 1420, 1659
BmrFI CCNGG 5 cut(s) 233, 254, 623, 1061, 1655
BmsI GCATC 3 cut(s) 290, 366, 1852
BoxI GACNNNNGTC 1 cut(s) 1280
BplI GAGNNNNNCTC 2 cut(s) 1840, 1872
BpmI CTGGAG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 1593
BpuEI CTTGAG 3 cut(s) 182, 935, 1022
BpuMI CCSGG 1 cut(s) 1655
BsaHI GRCGYC 4 cut(s) 5, 44, 271, 303
BsaI GGTCTC 1 cut(s) 1860
BsaJI CCNNGG 6 cut(s) 37, 81, 157, 231, 232, 622
BsaWI WCCGGW 3 cut(s) 284, 639, 1389
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 7 cut(s) 124, 199, 238, 323, 671, 804, 1606
Bse118I RCCGGY 3 cut(s) 46, 215, 658
Bse1I ACTGG 4 cut(s) 80, 797, 1080, 1357
Bse3DI GCAATG 3 cut(s) 249, 748, 966
BseAI TCCGGA 1 cut(s) 284
BseBI CCWGG 4 cut(s) 233, 254, 623, 1061
BseDI CCNNGG 6 cut(s) 37, 81, 157, 231, 232, 622
BseGI GGATG 5 cut(s) 281, 841, 1120, 1581, 1620
BseLI CCNNNNNNNGG 7 cut(s) 124, 199, 238, 323, 671, 804, 1606
BseMI GCAATG 3 cut(s) 249, 748, 966
BseMII CTCAG 5 cut(s) 687, 1528, 1584, 1815, 1871
BseNI ACTGG 4 cut(s) 80, 797, 1080, 1357
BseRI GAGGAG 3 cut(s) 182, 185, 881
BseXI GCAGC 2 cut(s) 206, 460
BseYI CCCAGC 2 cut(s) 391, 1600
Bsh1236I CGCG 4 cut(s) 210, 276, 321, 410
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 9 cut(s) 156, 203, 252, 257, 566, 796, 896, 1658, 1743
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 4 cut(s) 439, 585, 1312, 1599
BsiHKCI CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
BsiSI CCGG 8 cut(s) 47, 216, 285, 640, 659, 1390, 1655, 1740
BslFI GGGAC 4 cut(s) 55, 1034, 1231, 1431
BslI CCNNNNNNNGG 7 cut(s) 124, 199, 238, 323, 671, 804, 1606
BsmAI GTCTC 3 cut(s) 141, 1822, 1860
BsmFI GGGAC 4 cut(s) 55, 1034, 1231, 1431
BsnI GGCC 9 cut(s) 156, 203, 252, 257, 566, 796, 896, 1658, 1743
Bso31I GGTCTC 1 cut(s) 1860
BsoBI CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
Bsp1286I GDGCHC 6 cut(s) 145, 239, 439, 585, 1312, 1599
Bsp13I TCCGGA 1 cut(s) 284
Bsp143I GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
Bsp1720I GCTNAGC 1 cut(s) 1593
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 9 cut(s) 156, 203, 252, 257, 566, 796, 896, 1658, 1743
BspCNI CTCAG 5 cut(s) 688, 1527, 1585, 1814, 1870
BspEI TCCGGA 1 cut(s) 284
BspFNI CGCG 4 cut(s) 210, 276, 321, 410
BspLI GGNNCC 9 cut(s) 6, 99, 188, 638, 663, 895, 1419, 1420, 1659
BspMAI CTGCAG 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 631, 644, 690, 724
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 1860
BsrBI CCGCTC 1 cut(s) 1025
BsrDI GCAATG 3 cut(s) 249, 748, 966
BsrFI RCCGGY 3 cut(s) 46, 215, 658
BsrI ACTGG 4 cut(s) 80, 797, 1080, 1357
BssAI RCCGGY 3 cut(s) 46, 215, 658
BssECI CCNNGG 6 cut(s) 37, 81, 157, 231, 232, 622
BssMI GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
BssNI GRCGYC 4 cut(s) 5, 44, 271, 303
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 4 cut(s) 233, 254, 623, 1061
Bst4CI ACNGT 2 cut(s) 1048, 1282
Bst6I CTCTTC 2 cut(s) 590, 1508
BstACI GRCGYC 4 cut(s) 5, 44, 271, 303
BstC8I GCNNGC 5 cut(s) 217, 314, 943, 1023, 1089
BstDEI CTNAG 6 cut(s) 696, 1514, 1593, 1801, 1822, 1857
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 1777
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 5 cut(s) 281, 841, 1120, 1581, 1620
BstFNI CGCG 4 cut(s) 210, 276, 321, 410
BstH2I RGCGCY 2 cut(s) 8, 1082
BstHHI GCGC 3 cut(s) 7, 212, 1081
BstKTI GATC 6 cut(s) 639, 685, 732, 861, 1470, 1813
BstMAI GTCTC 3 cut(s) 141, 1822, 1860
BstMBI GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 7 cut(s) 209, 216, 318, 327, 330, 1307, 1664
BstNI CCWGG 4 cut(s) 233, 254, 623, 1061
BstPAI GACNNNNGTC 1 cut(s) 1280
BstPI GGTNACC 1 cut(s) 1777
BstSCI CCNGG 5 cut(s) 231, 252, 621, 1059, 1653
BstSFI CTRYAG 1 cut(s) 446
BstUI CGCG 4 cut(s) 210, 276, 321, 410
BstV1I GCAGC 2 cut(s) 206, 460
BstX2I RGATCY 3 cut(s) 636, 682, 729
BstYI RGATCY 3 cut(s) 636, 682, 729
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 9 cut(s) 156, 203, 252, 257, 566, 796, 896, 1658, 1743
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 5 cut(s) 281, 841, 1120, 1581, 1620
BtsIMutI CAGTG 3 cut(s) 1278, 1364, 1719
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 5 cut(s) 217, 314, 943, 1023, 1089
CfoI GCGC 3 cut(s) 7, 212, 1081
Cfr10I RCCGGY 3 cut(s) 46, 215, 658
CseI GACGC 5 cut(s) 52, 265, 279, 311, 1016
Csp6I GTAC 1 cut(s) 1367
CspCI CAANNNNNGTGG 2 cut(s) 1076, 1111
CviAII CATG 9 cut(s) 82, 589, 736, 1291, 1319, 1423, 1570, 1605, 1708
CviQI GTAC 1 cut(s) 1367
DdeI CTNAG 6 cut(s) 696, 1514, 1593, 1801, 1822, 1857
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 638, 684, 731, 860, 1469, 1812
DpnII GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
DraI TTTAAA 1 cut(s) 418
DraIII CACNNNGTG 1 cut(s) 919
DriI GACNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 590, 1508
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 2 cut(s) 590, 1508
EciI GGCGGA 3 cut(s) 140, 250, 537
Ecl136II GAGCTC 2 cut(s) 437, 1597
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 4 cut(s) 145, 239, 439, 1599
Eco31I GGTCTC 1 cut(s) 1860
Eco32I GATATC 2 cut(s) 1453, 1737
Eco47I GGWCC 8 cut(s) 78, 98, 187, 674, 871, 1098, 1275, 1418
Eco53kI GAGCTC 2 cut(s) 437, 1597
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 5 cut(s) 133, 144, 1247, 1414, 1754
Eco91I GGTNACC 1 cut(s) 1777
EcoICRI GAGCTC 2 cut(s) 437, 1597
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 2 cut(s) 187, 1418
EcoO65I GGTNACC 1 cut(s) 1777
EcoRII CCWGG 4 cut(s) 231, 252, 621, 1059
EcoRV GATATC 2 cut(s) 1453, 1737
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 4 cut(s) 145, 239, 439, 1599
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 9 cut(s) 85, 592, 739, 1294, 1322, 1426, 1573, 1608, 1711
FaqI GGGAC 4 cut(s) 55, 1034, 1231, 1431
FatI CATG 9 cut(s) 81, 588, 735, 1290, 1318, 1422, 1569, 1604, 1707
FauI CCCGC 1 cut(s) 1030
FbaI TGATCA 1 cut(s) 858
FokI GGATG 5 cut(s) 268, 848, 1127, 1568, 1607
FriOI GRGCYC 4 cut(s) 145, 239, 439, 1599
FspBI CTAG 2 cut(s) 722, 1092
GlaI GCGC 3 cut(s) 6, 211, 1080
GsaI CCCAGC 2 cut(s) 395, 1604
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 2 cut(s) 8, 1082
HaeIII GGCC 9 cut(s) 156, 203, 252, 257, 566, 796, 896, 1658, 1743
HapII CCGG 8 cut(s) 47, 216, 285, 640, 659, 1390, 1655, 1740
HgaI GACGC 5 cut(s) 52, 265, 279, 311, 1016
HhaI GCGC 3 cut(s) 7, 212, 1081
Hin1I GRCGYC 4 cut(s) 5, 44, 271, 303
Hin1II CATG 9 cut(s) 85, 592, 739, 1294, 1322, 1426, 1573, 1608, 1711
Hin6I GCGC 3 cut(s) 5, 210, 1079
HinP1I GCGC 3 cut(s) 5, 210, 1079
HindIII AAGCTT 1 cut(s) 1383
HinfI GANTC 8 cut(s) 128, 345, 526, 613, 689, 830, 1253, 1373
HpaII CCGG 8 cut(s) 47, 216, 285, 640, 659, 1390, 1655, 1740
HphI GGTGA 4 cut(s) 67, 217, 1537, 1820
Hpy166II GTNNAC 3 cut(s) 180, 1108, 1445
Hpy188I TCNGA 9 cut(s) 102, 597, 666, 697, 729, 835, 1517, 1804, 1848
Hpy8I GTNNAC 3 cut(s) 180, 1108, 1445
Hpy99I CGWCG 5 cut(s) 110, 273, 281, 305, 1010
HpyAV CCTTC 6 cut(s) 282, 880, 884, 1543, 1678, 1700
HpyCH4III ACNGT 2 cut(s) 1048, 1282
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 216, 318, 327, 330, 1307, 1664
HpyF3I CTNAG 6 cut(s) 696, 1514, 1593, 1801, 1822, 1857
Hsp92I GRCGYC 4 cut(s) 5, 44, 271, 303
Hsp92II CATG 9 cut(s) 85, 592, 739, 1294, 1322, 1426, 1573, 1608, 1711
HspAI GCGC 3 cut(s) 5, 210, 1079
KasI GGCGCC 1 cut(s) 4
KflI GGGWCCC 1 cut(s) 1418
Kpn2I TCCGGA 1 cut(s) 284
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 6 cut(s) 88, 434, 442, 550, 1030, 1602
Lsp1109I GCAGC 2 cut(s) 206, 460
LweI GCATC 3 cut(s) 290, 366, 1852
MaeI CTAG 2 cut(s) 722, 1092
MaeIII GTNAC 2 cut(s) 1714, 1777
MalI GATC 6 cut(s) 638, 684, 731, 860, 1469, 1812
MbiI CCGCTC 1 cut(s) 1025
MboI GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
MboII GAAGA 9 cut(s) 70, 577, 661, 1082, 1307, 1327, 1492, 1495, 1556
MflI RGATCY 3 cut(s) 636, 682, 729
MhlI GDGCHC 6 cut(s) 145, 239, 439, 585, 1312, 1599
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 8 cut(s) 784, 964, 1147, 1198, 1328, 1484, 1489, 1560
MluNI TGGCCA 1 cut(s) 566
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1247
MmeI TCCRAC 2 cut(s) 125, 1248
Mox20I TGGCCA 1 cut(s) 566
MroI TCCGGA 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 1484
MscI TGGCCA 1 cut(s) 566
MseI TTAA 5 cut(s) 417, 486, 654, 1146, 1197
MslI CAYNNNNRTG 4 cut(s) 1317, 1574, 1712, 1768
Msp20I TGGCCA 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 1223
MspI CCGG 8 cut(s) 47, 216, 285, 640, 659, 1390, 1655, 1740
MspR9I CCNGG 5 cut(s) 233, 254, 623, 1061, 1655
MvaI CCWGG 4 cut(s) 233, 254, 623, 1061
MvnI CGCG 4 cut(s) 210, 276, 321, 410
MwoI GCNNNNNNNGC 7 cut(s) 209, 216, 318, 327, 330, 1307, 1664
NaeI GCCGGC 1 cut(s) 217
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 1655
NcoI CCATGG 1 cut(s) 81
NdeII GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 9 cut(s) 85, 592, 739, 1294, 1322, 1426, 1573, 1608, 1711
NlaIV GGNNCC 9 cut(s) 6, 99, 188, 638, 663, 895, 1419, 1420, 1659
NmeAIII GCCGAG 3 cut(s) 164, 182, 218
NmuCI GTSAC 1 cut(s) 1714
PaeR7I CTCGAG 1 cut(s) 1247
PaqCI CACCTGC 1 cut(s) 453
PasI CCCWGGG 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 839
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 1484
PfeI GAWTC 7 cut(s) 128, 345, 526, 613, 689, 830, 1373
PfoI TCCNGGA 1 cut(s) 1059
PleI GAGTC 1 cut(s) 1247
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 1247
PpuMI RGGWCCY 2 cut(s) 187, 1418
PshAI GACNNNNGTC 1 cut(s) 1280
PshBI ATTAAT 2 cut(s) 1146, 1197
Psp124BI GAGCTC 2 cut(s) 439, 1599
Psp5II RGGWCCY 2 cut(s) 187, 1418
Psp6I CCWGG 4 cut(s) 231, 252, 621, 1059
PspEI GGTNACC 1 cut(s) 1777
PspFI CCCAGC 2 cut(s) 391, 1600
PspGI CCWGG 4 cut(s) 231, 252, 621, 1059
PspN4I GGNNCC 9 cut(s) 6, 99, 188, 638, 663, 895, 1419, 1420, 1659
PspPPI RGGWCCY 2 cut(s) 187, 1418
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 3 cut(s) 636, 682, 729
PvuII CAGCTG 1 cut(s) 1223
RsaI GTAC 1 cut(s) 1368
RsaNI GTAC 1 cut(s) 1367
RseI CAYNNNNRTG 4 cut(s) 1317, 1574, 1712, 1768
SacI GAGCTC 2 cut(s) 439, 1599
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 5 cut(s) 417, 486, 654, 1146, 1197
Sau3AI GATC 6 cut(s) 636, 682, 729, 858, 1467, 1810
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 5 cut(s) 233, 254, 623, 1061, 1655
SduI GDGCHC 6 cut(s) 145, 239, 439, 585, 1312, 1599
SfaNI GCATC 3 cut(s) 290, 366, 1852
SfcI CTRYAG 1 cut(s) 446
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 1247
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 8 cut(s) 78, 98, 187, 674, 871, 1098, 1275, 1418
SlaI CTCGAG 1 cut(s) 1247
SmiMI CAYNNNNRTG 4 cut(s) 1317, 1574, 1712, 1768
SmlI CTYRAG 4 cut(s) 197, 950, 1037, 1247
SmoI CTYRAG 4 cut(s) 197, 950, 1037, 1247
Sse9I AATT 8 cut(s) 784, 964, 1147, 1198, 1328, 1484, 1489, 1560
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 722, 1092
SstI GAGCTC 2 cut(s) 439, 1599
StyD4I CCNGG 5 cut(s) 231, 252, 621, 1059, 1653
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 1048, 1282
TaqI TCGA 9 cut(s) 20, 498, 534, 803, 1005, 1170, 1248, 1284, 1827
TaqII GACCGA 1 cut(s) 119
TasI AATT 8 cut(s) 784, 964, 1147, 1198, 1328, 1484, 1489, 1560
TauI GCSGC 8 cut(s) 215, 276, 324, 327, 330, 333, 410, 553
TfiI GAWTC 7 cut(s) 128, 345, 526, 613, 689, 830, 1373
Tru1I TTAA 5 cut(s) 417, 486, 654, 1146, 1197
Tru9I TTAA 5 cut(s) 417, 486, 654, 1146, 1197
TscAI CASTG 3 cut(s) 1285, 1364, 1719
TseFI GTSAC 1 cut(s) 1714
TseI GCWGC 2 cut(s) 219, 448
Tsp45I GTSAC 1 cut(s) 1714
TspDTI ATGAA 8 cut(s) 577, 977, 1083, 1183, 1307, 1321, 1570, 1666
TspGWI ACGGA 1 cut(s) 1295
TspRI CASTG 3 cut(s) 1285, 1364, 1719
VpaK11BI GGWCC 8 cut(s) 78, 98, 187, 674, 871, 1098, 1275, 1418
VspI ATTAAT 2 cut(s) 1146, 1197
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 2 cut(s) 1328, 1484
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 1247
XmnI GAANNNNTTC 1 cut(s) 1484
XspI CTAG 2 cut(s) 722, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.